FFCP PHASE1:Mm9::chr2:124436014..124436021,+: Difference between revisions
From FANTOM5_SSTAR
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|DHSsupport=NA | |DHSsupport=NA | ||
|DPIdataset=NA | |DPIdataset=NA | ||
|EntrezGene= | |EntrezGene=214968 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2283 | |MCL_coexpression_id=2283 | ||
|TSSclassifier=NA | |TSSclassifier=NA | ||
|UniProt= | |UniProt=Q76KF0,A2AW76,A2AW75,A2AW74,A2AW73 | ||
|association_with_transcript=-10bp_to_ENSMUST00000051419,ENSMUST00000076335,ENSMUST00000077847,ENSMUST00000078621,NM_172537,NM_199238,NM_199239,NM_199240,NM_199241,uc008mbn.1,uc008mbo.1,uc008mbp.1,uc008mbq.1,uc008mbr.2,uc008mbs.2,uc008mbt.2_5end | |association_with_transcript=-10bp_to_ENSMUST00000051419,ENSMUST00000076335,ENSMUST00000077847,ENSMUST00000078621,NM_172537,NM_199238,NM_199239,NM_199240,NM_199241,uc008mbn.1,uc008mbo.1,uc008mbp.1,uc008mbq.1,uc008mbr.2,uc008mbs.2,uc008mbt.2_5end | ||
|cluster_id=chr2:124436014..124436021,+ | |cluster_id=chr2:124436014..124436021,+ | ||
Latest revision as of 15:36, 25 September 2015
| Short description: | p6@Sema6d |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_6_at_Sema6d_5end |
| Coexpression cluster: | MCL_coexpression_mm9:2283 |
| Association with transcript: | -10bp_to_ENSMUST00000051419, ENSMUST00000076335, ENSMUST00000077847, ENSMUST00000078621, NM_172537, NM_199238, NM_199239, NM_199240, NM_199241, uc008mbn.1, uc008mbo.1, uc008mbp.1, uc008mbq.1, uc008mbr.2, uc008mbs.2, uc008mbt.2_5end |
| EntrezGene: | Sema6d |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| CNS neuron (sensu Vertebrata) | 1.45e-18 | 23 |
| neuroblast (sensu Vertebrata) | 1.45e-18 | 23 |
| neuron | 4.86e-13 | 33 |
| neuronal stem cell | 4.86e-13 | 33 |
| neuroblast | 4.86e-13 | 33 |
| electrically signaling cell | 4.86e-13 | 33 |
| neuron of cerebral cortex | 9.62e-12 | 6 |
| neural cell | 2.06e-11 | 43 |
| ectodermal cell | 5.00e-11 | 44 |
| neurectodermal cell | 5.00e-11 | 44 |
| electrically responsive cell | 2.88e-10 | 39 |
| electrically active cell | 2.88e-10 | 39 |
| Ontology term | p-value | n |
|---|---|---|
| central nervous system | 6.10e-15 | 73 |
| nervous system | 2.59e-14 | 75 |
| regional part of nervous system | 1.40e-12 | 54 |
| neural tube | 5.91e-12 | 52 |
| neural rod | 5.91e-12 | 52 |
| future spinal cord | 5.91e-12 | 52 |
| neural keel | 5.91e-12 | 52 |
| ectoderm-derived structure | 2.76e-11 | 95 |
| ectoderm | 2.76e-11 | 95 |
| presumptive ectoderm | 2.76e-11 | 95 |
| neurectoderm | 1.49e-08 | 64 |
| neural plate | 1.49e-08 | 64 |
| presumptive neural plate | 1.49e-08 | 64 |
| ecto-epithelium | 1.90e-08 | 73 |
| gray matter | 2.33e-08 | 34 |
| posterior neural tube | 3.07e-08 | 12 |
| chordal neural plate | 3.07e-08 | 12 |
| regional part of brain | 6.89e-08 | 46 |
| brain | 1.27e-07 | 47 |
| future brain | 1.27e-07 | 47 |
| spinal cord | 4.28e-07 | 6 |
| dorsal region element | 4.28e-07 | 6 |
| dorsum | 4.28e-07 | 6 |
