FFCP PHASE2:Hg19::chr2:237076971..237076978,-: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:2637 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:4186 |TSSclass...") |
No edit summary |
||
| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=2637 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=4186 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=P52951 | ||
|association_with_transcript=33bp_to_ENST00000306318_5end | |association_with_transcript=33bp_to_ENST00000306318_5end | ||
|cluster_id=chr2:237076971..237076978,- | |cluster_id=chr2:237076971..237076978,- | ||
Latest revision as of 02:16, 16 September 2015
| Short description: | p3@GBX2 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_3_at_GBX2_5end |
| Coexpression cluster: | C4202_Hepatic_Astrocyte_testicular_teratocarcinoma_synovial_basal_prostate |
| Association with transcript: | 33bp_to_ENST00000306318_5end |
| EntrezGene: | GBX2 |
| HGNC: | 4186 |
| UniProt: | P52951 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p3@GBX2 |
|---|
0.0
0.5
1.0
1.5
2.0
2.5
3.0
3.5
4.0
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| astrocyte of the cerebellum | 5.00e-45 | 3 |
| oligodendrocyte | 5.35e-20 | 7 |
| macroglial cell | 5.35e-20 | 7 |
| astrocyte | 5.35e-20 | 7 |
| oligodendrocyte precursor cell | 5.35e-20 | 7 |
| endothelial cell of sinusoid | 9.07e-18 | 2 |
| endothelial cell of hepatic sinusoid | 9.07e-18 | 2 |
| glial cell (sensu Vertebrata) | 7.61e-09 | 15 |
| glial cell | 7.61e-09 | 15 |
| glioblast | 7.61e-09 | 15 |
Showing 1 to 10 of 13 entries
| Ontology term | p-value | n |
|---|---|---|
| cerebellum | 3.88e-23 | 6 |
| rhombic lip | 3.88e-23 | 6 |
| hepatic sinusoid | 9.07e-18 | 2 |
| abdomen blood vessel | 9.07e-18 | 2 |
| sinusoid | 9.07e-18 | 2 |
| abdominal segment blood vessel | 9.07e-18 | 2 |
| regional part of metencephalon | 8.39e-16 | 9 |
| metencephalon | 8.39e-16 | 9 |
| future metencephalon | 8.39e-16 | 9 |
| liver parenchyma | 2.59e-12 | 3 |
Showing 1 to 10 of 21 entries
