FFCP PHASE1:Mm9::chr2:116946787..116946885,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=114715|HGNC=|MCL_coexpression_id=361|UniProt=Q924S8|association_with_transcript=-224bp_to_ENSMUST00000028829_5end|description=CAGE_peak_1_at_Spred1_5end|id=chr2:116946787..116946885,+|ontology_enrichment_celltype=CL:0000393!4.18e-07!39;CL:0000211!4.18e-07!39|ontology_enrichment_celltype_v019_2=CL:0000393,4.18e-07,39;CL:0000211,4.18e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!3.16e-17!102;UBERON:0000924!3.16e-17!102;UBERON:0006601!3.16e-17!102;UBERON:0000073!1.26e-14!75;UBERON:0001016!1.26e-14!75;UBERON:0001017!5.24e-14!73;UBERON:0005743!5.24e-14!73;UBERON:0002346!6.70e-13!71;UBERON:0003075!6.70e-13!71;UBERON:0007284!6.70e-13!71;UBERON:0000033!1.33e-09!63;UBERON:0000955!5.81e-09!50;UBERON:0006238!5.81e-09!50;UBERON:0001049!1.01e-08!52;UBERON:0005068!1.01e-08!52;UBERON:0006241!1.01e-08!52;UBERON:0007135!1.01e-08!52;UBERON:0002616!1.74e-08!49;UBERON:0002020!1.18e-07!34;UBERON:0002021!1.36e-07!10;UBERON:0000411!1.36e-07!10;UBERON:0001950!1.36e-07!10;UBERON:0003056!3.27e-07!49;UBERON:0005157!4.42e-07!27|ontology_enrichment_uberon_v019_2=UBERON:0004121,6.90e-15,95;UBERON:0000924,6.90e-15,95;UBERON:0006601,6.90e-15,95;UBERON:0001016,1.26e-14,75;UBERON:0001017,5.24e-14,73;UBERON:0010371,6.99e-12,73;UBERON:0002346,8.25e-11,64;UBERON:0003075,8.25e-11,64;UBERON:0007284,8.25e-11,64;UBERON:0010314,1.00e-10,92;UBERON:0000073,1.51e-09,54;UBERON:0001049,1.01e-08,52;UBERON:0005068,1.01e-08,52;UBERON:0006241,1.01e-08,52;UBERON:0007135,1.01e-08,52;UBERON:0000955,1.06e-07,47;UBERON:0006238,1.06e-07,47;UBERON:0002020,1.18e-07,34;UBERON:0002021,1.36e-07,10;UBERON:0000411,1.36e-07,10;UBERON:0001950,1.36e-07,10;UBERON:0002616,2.99e-07,46;UBERON:0003056,3.27e-07,49|phase1_expression=49.3258449082765,3.83872948403297,2.72999543633722,4.23449895829562,9.01612313903425,11.9194283057442,10.5125688267987,7.74739940649458,31.677462484125,38.3865823168069,27.2236569478553,28.0797999663584,6.16322627752341,4.54586092578786,11.9919514253639,7.49158489342356,9.79386629379405,4.41647031501533,6.7186072466812,9.76096199135469,32.1463636771044,12.6099508025124,12.7987896678078,5.43974237497583,6.42345986988076,3.44539178469012,6.03066794622705,3.66301095566011,10.8313349090133,7.05684363327806,6.65191531965914,23.4961349180064,16.6067492647834,15.8481681015439,8.95440021228951,12.1351291111699,11.0251452381679,4.18531630736908,1.5626706890476,4.18818995179039,1.17646297606203,3.41522742479223,1.45653105909346,29.9634426781874,33.9612719585374,27.7155595764139,9.38869613217647,19.6222640742402,24.1654801007919,21.1928589990969,19.1781397626747,8.62515386189829,3.18786951509699,7.97898356212479,7.39406358113421,35.7590616089966,33.2378790328958,42.8007836590277,35.20306418957,30.1524858185059,25.3532561402472,19.6529828600097,15.1180115338894,28.7967909530048,30.6548572395762,22.0248835633291,30.2596111623589,31.1216827310459,32.558538264862,27.1361936046698,30.7074443573018,31.992910253226,27.8294361599033,24.9881230398506,18.2106394934649,18.3843757322004,48.450987639731,55.6716794051418,54.5303193059664,24.1351906546255,23.4208367622169,18.7528813400434,42.9941818462127,49.5231096827878,47.6730533063648,56.2740598254705,54.8130971076546,36.9070902734095,38.0902752465916,42.7735030204406,38.5519769973231,27.5335640634044,16.319312008986,6.47643829965381,8.4470934268197,12.0967259516281,16.0106638950197,31.1887490317846,29.8753905293299,30.0338638333789,42.6755561923342,35.931413676009,61.153257529595,42.6640021891999,21.4326130601102,25.589346412985,24.7706978057244,17.127581957859,12.1700805314171,64.7207726322636,31.7478147982029,31.0554787878384,40.3577120198102,37.9821054192609,49.7400231184031,61.0739633862223,12.1125534189843,17.4965221873093,16.8076004870476,37.2063754879041,22.3049933644997,22.3042616442202,18.6391761218122,48.6016123039168,72.8874539710824,13.2837668708468,38.5804700909063,16.7972764678154,23.2538515543708,64.4099749440738,74.5725982594361,41.5915905493581,79.2638900076781,76.2032062844385,48.6224024269371,55.1620294430376,47.1516254626964,29.1112311227618,24.0086620511991,17.4666740385773,29.5373405525337,33.1059030384201,30.430499937104,34.8128129200502,54.361162821911,39.9714807288731,46.1012484833866,28.9747775227698,39.4489427067101,40.0904889955777,40.2928074335443,36.605687315405,41.4290401346141,38.6559904839605,37.6581309626537,42.394298832339,5.61770549850588,8.4924809347856,17.0498099637356,24.4408411591892,22.045449638223,20.3470129450947,20.8335367314985,16.3314312350345,18.9748548851475,17.4400458562806,24.681152928765,22.5357110768637,23.8611782374547,23.1476124351524,25.1313309592153,23.6843979629038,29.2001653337097,22.1440590954613,44.1608891984667,41.7792726259895,2.97376904685418,8.46241813323342,29.4337785738623,26.7072172639504,30.9281907173024,26.4205417256579,19.1245117706588,22.8270751335071,15.6594590309689,15.646400698781,18.5988054512199,20.4925166202385,16.9618755793635,16.178749355776,11.4553166433588,11.7493351220077,30.7261999543992,29.5903647659198,30.4310886317317,34.0097717501675,27.1533482034676,42.923121772875,32.693289693241,19.4845395333075,22.4508180813166,17.0288086212085,14.5261787272703,15.5165948315967,15.9212786041694,11.4679677316275,14.4030686185837,14.2294524253926,12.2220408855082,18.1248566594011,18.159145398804,11.5315793538994,63.258010872036,18.9791883310937,18.7222603868736,20.9640468696103,14.7105879087968,9.16642690590398,35.6573657021547,33.5399798833758,35.0374699350356,35.6464680127895,33.3260152569673,47.4042708560339,48.0848154589748,53.0763522173213,47.2905432318573,48.2793023434329,54.5335308808606,41.4574186230817,45.2434652488646,42.5268232229644,18.0949540727127,30.4587182938477,17.2117495556663,21.2471294654644,53.3027958759469,52.3936239067148,22.7869574073579,14.3908428506493,52.0588562036824,51.9283529914529,54.2866962286653,52.812104347514,53.2488831056922,81.2429643363949,51.8157698143865,49.3912399870117,47.0392455756363,61.0510501201433,36.3366618133168,35.7911863371183,62.7114793511268,29.0347416431662,19.9117707509944,23.0641604347232,16.0231485191318,16.0314317792513,12.993283286754,17.2163682848599,28.6855405416725,35.6263054887955,32.7977588113944,18.0140952023415,6.32511651449993,16.5016869197099,8.85142974959849,27.7294084808218,21.2148241403717,25.9347812388227,26.2463545790565,32.9982312563831,36.8589806148751,18.267896946876,9.1521966144847,8.04961869282517,19.4064990288366,27.8657767471101,51.8300809693857,39.2034012033013,38.6766394570162,33.3206026482474,16.0314460146418,55.6275906031529,14.8657666294132,37.1496362333801,25.5568447770202,9.79515976424393,11.072232445403,15.5569157780435,49.4637231282119,50.2425713841932,49.0609907005704,6.68269432610579,37.0113112489928,33.3443926088032,28.6214153177773,20.9088296014469,19.652630737156,17.9369580691812,28.6807491366916,14.3965768091216,17.3684064211002,14.9121435140862,2.81846469342095,46.6491623657214,33.2571565818766,46.8627363909155,33.4523942807324,37.1703476079712,35.3245288323719,32.0302786716117,18.2455259300737,7.73069186643219,10.657110231541,17.3806116345498,22.2997736819181,16.4337531463724,14.8109738194686,19.8719632190904,17.4839592207513,16.1061902356758,14.1781946087594,14.9430345923258,12.95515713135,17.9470609543576,15.7881766798399,14.3355644044091,13.7914744574251,18.1384306892169,7.76950836809226,10.4965212233087,6.2117308054709,19.8985281853156,24.774086759556,32.6009891195732,19.507522496195,20.0628841614145,51.3924176781531,58.0009797999043,62.4456109648942,73.5531620430983,70.5634995363762,67.2300568676833,66.152205022717,69.7997864997542,60.7210828038834,75.0752452040139,32.900589184184,35.5132137326918,28.000311343678,35.9797941261075,33.3284928578492,41.3647894012532,30.2255549810197,26.1664522693396,32.4128401687733,31.3344542587109,27.6292436880361,30.1802146217722,31.6508295248203,34.7016326034392,38.1945868554828,40.4849637590613,35.4606037391258,38.1960256518136,25.1372399490017,30.764574308089,28.1152786956041,29.1060322101313,30.0429599333624,29.0692833264657,32.3736268628737,35.4535207066125,31.0977553883713,27.0961802780978,30.2843173876272,30.8628249411756,38.0818408178599,37.3331988203386,24.9630936333511,31.916989284309,37.0380693083791,39.2202607362575,34.6218780499204,43.189081863708,38.6402430779064,32.4269386105688,25.2735940826259|short_description=p1@Spred1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:114715 | |||
|HGNC= | |||
|MCL_coexpression_id=361 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q924S8 | |||
|association_with_transcript=-224bp_to_ENSMUST00000028829_5end | |||
|cluster_id=chr2:116946787..116946885,+ | |||
|description=CAGE_peak_1_at_Spred1_5end | |||
|id=chr2:116946787..116946885,+ | |||
|ontology_enrichment_celltype=CL:0000393!4.18e-07!39;CL:0000211!4.18e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,4.18e-07,39;CL:0000211,4.18e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!3.16e-17!102;UBERON:0000924!3.16e-17!102;UBERON:0006601!3.16e-17!102;UBERON:0000073!1.26e-14!75;UBERON:0001016!1.26e-14!75;UBERON:0001017!5.24e-14!73;UBERON:0005743!5.24e-14!73;UBERON:0002346!6.70e-13!71;UBERON:0003075!6.70e-13!71;UBERON:0007284!6.70e-13!71;UBERON:0000033!1.33e-09!63;UBERON:0000955!5.81e-09!50;UBERON:0006238!5.81e-09!50;UBERON:0001049!1.01e-08!52;UBERON:0005068!1.01e-08!52;UBERON:0006241!1.01e-08!52;UBERON:0007135!1.01e-08!52;UBERON:0002616!1.74e-08!49;UBERON:0002020!1.18e-07!34;UBERON:0002021!1.36e-07!10;UBERON:0000411!1.36e-07!10;UBERON:0001950!1.36e-07!10;UBERON:0003056!3.27e-07!49;UBERON:0005157!4.42e-07!27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,6.90e-15,95;UBERON:0000924,6.90e-15,95;UBERON:0006601,6.90e-15,95;UBERON:0001016,1.26e-14,75;UBERON:0001017,5.24e-14,73;UBERON:0010371,6.99e-12,73;UBERON:0002346,8.25e-11,64;UBERON:0003075,8.25e-11,64;UBERON:0007284,8.25e-11,64;UBERON:0010314,1.00e-10,92;UBERON:0000073,1.51e-09,54;UBERON:0001049,1.01e-08,52;UBERON:0005068,1.01e-08,52;UBERON:0006241,1.01e-08,52;UBERON:0007135,1.01e-08,52;UBERON:0000955,1.06e-07,47;UBERON:0006238,1.06e-07,47;UBERON:0002020,1.18e-07,34;UBERON:0002021,1.36e-07,10;UBERON:0000411,1.36e-07,10;UBERON:0001950,1.36e-07,10;UBERON:0002616,2.99e-07,46;UBERON:0003056,3.27e-07,49 | |||
|phase1_expression=49.3258449082765,3.83872948403297,2.72999543633722,4.23449895829562,9.01612313903425,11.9194283057442,10.5125688267987,7.74739940649458,31.677462484125,38.3865823168069,27.2236569478553,28.0797999663584,6.16322627752341,4.54586092578786,11.9919514253639,7.49158489342356,9.79386629379405,4.41647031501533,6.7186072466812,9.76096199135469,32.1463636771044,12.6099508025124,12.7987896678078,5.43974237497583,6.42345986988076,3.44539178469012,6.03066794622705,3.66301095566011,10.8313349090133,7.05684363327806,6.65191531965914,23.4961349180064,16.6067492647834,15.8481681015439,8.95440021228951,12.1351291111699,11.0251452381679,4.18531630736908,1.5626706890476,4.18818995179039,1.17646297606203,3.41522742479223,1.45653105909346,29.9634426781874,33.9612719585374,27.7155595764139,9.38869613217647,19.6222640742402,24.1654801007919,21.1928589990969,19.1781397626747,8.62515386189829,3.18786951509699,7.97898356212479,7.39406358113421,35.7590616089966,33.2378790328958,42.8007836590277,35.20306418957,30.1524858185059,25.3532561402472,19.6529828600097,15.1180115338894,28.7967909530048,30.6548572395762,22.0248835633291,30.2596111623589,31.1216827310459,32.558538264862,27.1361936046698,30.7074443573018,31.992910253226,27.8294361599033,24.9881230398506,18.2106394934649,18.3843757322004,48.450987639731,55.6716794051418,54.5303193059664,24.1351906546255,23.4208367622169,18.7528813400434,42.9941818462127,49.5231096827878,47.6730533063648,56.2740598254705,54.8130971076546,36.9070902734095,38.0902752465916,42.7735030204406,38.5519769973231,27.5335640634044,16.319312008986,6.47643829965381,8.4470934268197,12.0967259516281,16.0106638950197,31.1887490317846,29.8753905293299,30.0338638333789,42.6755561923342,35.931413676009,61.153257529595,42.6640021891999,21.4326130601102,25.589346412985,24.7706978057244,17.127581957859,12.1700805314171,64.7207726322636,31.7478147982029,31.0554787878384,40.3577120198102,37.9821054192609,49.7400231184031,61.0739633862223,12.1125534189843,17.4965221873093,16.8076004870476,37.2063754879041,22.3049933644997,22.3042616442202,18.6391761218122,48.6016123039168,72.8874539710824,13.2837668708468,38.5804700909063,16.7972764678154,23.2538515543708,64.4099749440738,74.5725982594361,41.5915905493581,79.2638900076781,76.2032062844385,48.6224024269371,55.1620294430376,47.1516254626964,29.1112311227618,24.0086620511991,17.4666740385773,29.5373405525337,33.1059030384201,30.430499937104,34.8128129200502,54.361162821911,39.9714807288731,46.1012484833866,28.9747775227698,39.4489427067101,40.0904889955777,40.2928074335443,36.605687315405,41.4290401346141,38.6559904839605,37.6581309626537,42.394298832339,5.61770549850588,8.4924809347856,17.0498099637356,24.4408411591892,22.045449638223,20.3470129450947,20.8335367314985,16.3314312350345,18.9748548851475,17.4400458562806,24.681152928765,22.5357110768637,23.8611782374547,23.1476124351524,25.1313309592153,23.6843979629038,29.2001653337097,22.1440590954613,44.1608891984667,41.7792726259895,2.97376904685418,8.46241813323342,29.4337785738623,26.7072172639504,30.9281907173024,26.4205417256579,19.1245117706588,22.8270751335071,15.6594590309689,15.646400698781,18.5988054512199,20.4925166202385,16.9618755793635,16.178749355776,11.4553166433588,11.7493351220077,30.7261999543992,29.5903647659198,30.4310886317317,34.0097717501675,27.1533482034676,42.923121772875,32.693289693241,19.4845395333075,22.4508180813166,17.0288086212085,14.5261787272703,15.5165948315967,15.9212786041694,11.4679677316275,14.4030686185837,14.2294524253926,12.2220408855082,18.1248566594011,18.159145398804,11.5315793538994,63.258010872036,18.9791883310937,18.7222603868736,20.9640468696103,14.7105879087968,9.16642690590398,35.6573657021547,33.5399798833758,35.0374699350356,35.6464680127895,33.3260152569673,47.4042708560339,48.0848154589748,53.0763522173213,47.2905432318573,48.2793023434329,54.5335308808606,41.4574186230817,45.2434652488646,42.5268232229644,18.0949540727127,30.4587182938477,17.2117495556663,21.2471294654644,53.3027958759469,52.3936239067148,22.7869574073579,14.3908428506493,52.0588562036824,51.9283529914529,54.2866962286653,52.812104347514,53.2488831056922,81.2429643363949,51.8157698143865,49.3912399870117,47.0392455756363,61.0510501201433,36.3366618133168,35.7911863371183,62.7114793511268,29.0347416431662,19.9117707509944,23.0641604347232,16.0231485191318,16.0314317792513,12.993283286754,17.2163682848599,28.6855405416725,35.6263054887955,32.7977588113944,18.0140952023415,6.32511651449993,16.5016869197099,8.85142974959849,27.7294084808218,21.2148241403717,25.9347812388227,26.2463545790565,32.9982312563831,36.8589806148751,18.267896946876,9.1521966144847,8.04961869282517,19.4064990288366,27.8657767471101,51.8300809693857,39.2034012033013,38.6766394570162,33.3206026482474,16.0314460146418,55.6275906031529,14.8657666294132,37.1496362333801,25.5568447770202,9.79515976424393,11.072232445403,15.5569157780435,49.4637231282119,50.2425713841932,49.0609907005704,6.68269432610579,37.0113112489928,33.3443926088032,28.6214153177773,20.9088296014469,19.652630737156,17.9369580691812,28.6807491366916,14.3965768091216,17.3684064211002,14.9121435140862,2.81846469342095,46.6491623657214,33.2571565818766,46.8627363909155,33.4523942807324,37.1703476079712,35.3245288323719,32.0302786716117,18.2455259300737,7.73069186643219,10.657110231541,17.3806116345498,22.2997736819181,16.4337531463724,14.8109738194686,19.8719632190904,17.4839592207513,16.1061902356758,14.1781946087594,14.9430345923258,12.95515713135,17.9470609543576,15.7881766798399,14.3355644044091,13.7914744574251,18.1384306892169,7.76950836809226,10.4965212233087,6.2117308054709,19.8985281853156,24.774086759556,32.6009891195732,19.507522496195,20.0628841614145,51.3924176781531,58.0009797999043,62.4456109648942,73.5531620430983,70.5634995363762,67.2300568676833,66.152205022717,69.7997864997542,60.7210828038834,75.0752452040139,32.900589184184,35.5132137326918,28.000311343678,35.9797941261075,33.3284928578492,41.3647894012532,30.2255549810197,26.1664522693396,32.4128401687733,31.3344542587109,27.6292436880361,30.1802146217722,31.6508295248203,34.7016326034392,38.1945868554828,40.4849637590613,35.4606037391258,38.1960256518136,25.1372399490017,30.764574308089,28.1152786956041,29.1060322101313,30.0429599333624,29.0692833264657,32.3736268628737,35.4535207066125,31.0977553883713,27.0961802780978,30.2843173876272,30.8628249411756,38.0818408178599,37.3331988203386,24.9630936333511,31.916989284309,37.0380693083791,39.2202607362575,34.6218780499204,43.189081863708,38.6402430779064,32.4269386105688,25.2735940826259 | |||
|short_description=p1@Spred1 | |||
}} |
Revision as of 10:23, 6 August 2015
Short description: | p1@Spred1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Spred1_5end |
Coexpression cluster: | MCL_coexpression_mm9:361 |
Association with transcript: | -224bp_to_ENSMUST00000028829_5end |
EntrezGene: | 114715 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 4.18e-07 | 39 |
electrically active cell | 4.18e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 6.90e-15 | 95 |
ectoderm | 6.90e-15 | 95 |
presumptive ectoderm | 6.90e-15 | 95 |
nervous system | 1.26e-14 | 75 |
central nervous system | 5.24e-14 | 73 |
ecto-epithelium | 6.99e-12 | 73 |
neurectoderm | 8.25e-11 | 64 |
neural plate | 8.25e-11 | 64 |
presumptive neural plate | 8.25e-11 | 64 |
structure with developmental contribution from neural crest | 1.00e-10 | 92 |
regional part of nervous system | 1.51e-09 | 54 |
neural tube | 1.01e-08 | 52 |
neural rod | 1.01e-08 | 52 |
future spinal cord | 1.01e-08 | 52 |
neural keel | 1.01e-08 | 52 |
brain | 1.06e-07 | 47 |
future brain | 1.06e-07 | 47 |
gray matter | 1.18e-07 | 34 |
occipital lobe | 1.36e-07 | 10 |
visual cortex | 1.36e-07 | 10 |
neocortex | 1.36e-07 | 10 |
regional part of brain | 2.99e-07 | 46 |
pre-chordal neural plate | 3.27e-07 | 49 |