FFCP PHASE1:Mm9::chr3:34548946..34548972,+: Difference between revisions
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{{FFCP|EntrezGene=20674|HGNC=|MCL_coexpression_id=3407|UniProt=Q60I23|association_with_transcript=-4bp_to_ENSMUST00000169607_5end|description=CAGE_peak_2_at_Sox2_5end|id=chr3:34548946..34548972,+|ontology_enrichment_celltype=CL:0000221!1.74e-27!44;CL:0000133!1.74e-27!44;CL:0002319!1.33e-26!43;CL:0000055!1.59e-22!50;CL:0000540!8.86e-20!33;CL:0000047!8.86e-20!33;CL:0000031!8.86e-20!33;CL:0000404!8.86e-20!33;CL:0000393!7.46e-17!39;CL:0000211!7.46e-17!39;CL:0000117!1.33e-13!23;CL:0000337!1.33e-13!23;CL:0002321!5.12e-13!70;CL:0000220!5.12e-13!70;CL:0000333!1.45e-07!10;CL:0000095!1.45e-07!10;CL:0000243!1.45e-07!10;CL:0000123!1.45e-07!10;CL:0000125!1.45e-07!10;CL:0000030!1.45e-07!10;CL:0000339!1.45e-07!10;CL:0000107!8.66e-07!9|ontology_enrichment_celltype_v019_2=CL:0000221,4.50e-30,44;CL:0000133,4.50e-30,44;CL:0002319,4.46e-29,43;CL:0000540,3.15e-22,33;CL:0000047,3.15e-22,33;CL:0000031,3.15e-22,33;CL:0000404,3.15e-22,33;CL:0000393,3.31e-17,39;CL:0000211,3.31e-17,39;CL:0000117,3.23e-15,23;CL:0000337,3.23e-15,23;CL:0002321,1.39e-14,70;CL:0000333,1.64e-07,10;CL:0000095,1.64e-07,10;CL:0000243,1.64e-07,10;CL:0000123,1.64e-07,10;CL:0000125,1.64e-07,10;CL:0000030,1.64e-07,10;CL:0000339,1.64e-07,10;CL:0000107,1.71e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!7.39e-43!75;UBERON:0001016!7.39e-43!75;UBERON:0001017!6.49e-41!73;UBERON:0005743!6.49e-41!73;UBERON:0004121!3.09e-40!102;UBERON:0000924!3.09e-40!102;UBERON:0006601!3.09e-40!102;UBERON:0002346!1.50e-28!71;UBERON:0003075!1.50e-28!71;UBERON:0007284!1.50e-28!71;UBERON:0000033!1.58e-28!63;UBERON:0001049!1.20e-26!52;UBERON:0005068!1.20e-26!52;UBERON:0006241!1.20e-26!52;UBERON:0007135!1.20e-26!52;UBERON:0000955!7.52e-24!50;UBERON:0006238!7.52e-24!50;UBERON:0002616!2.25e-23!49;UBERON:0003056!1.53e-22!49;UBERON:0003080!7.16e-20!40;UBERON:0002780!2.62e-19!39;UBERON:0001890!2.62e-19!39;UBERON:0006240!2.62e-19!39;UBERON:0002020!2.00e-18!34;UBERON:0002791!5.85e-15!29;UBERON:0003528!5.85e-15!29;UBERON:0001893!5.85e-15!29;UBERON:0007811!2.95e-14!86;UBERON:0000153!6.76e-12!94;UBERON:0000956!1.19e-10!21;UBERON:0001869!1.19e-10!21;UBERON:0000203!1.19e-10!21;UBERON:0002619!4.56e-09!17;UBERON:0000010!2.55e-08!11;UBERON:0004111!8.49e-08!122;UBERON:0003076!2.82e-07!12;UBERON:0003057!2.82e-07!12;UBERON:0002410!8.66e-07!9|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.61e-47,75;UBERON:0001017,2.52e-45,73;UBERON:0004121,7.56e-45,95;UBERON:0000924,7.56e-45,95;UBERON:0006601,7.56e-45,95;UBERON:0002346,3.53e-34,64;UBERON:0003075,3.53e-34,64;UBERON:0007284,3.53e-34,64;UBERON:0010371,8.92e-30,73;UBERON:0000073,1.01e-29,54;UBERON:0001049,3.39e-29,52;UBERON:0005068,3.39e-29,52;UBERON:0006241,3.39e-29,52;UBERON:0007135,3.39e-29,52;UBERON:0000955,9.42e-25,47;UBERON:0006238,9.42e-25,47;UBERON:0003056,1.06e-24,49;UBERON:0002616,3.19e-24,46;UBERON:0003080,2.48e-22,40;UBERON:0002780,1.08e-21,39;UBERON:0001890,1.08e-21,39;UBERON:0006240,1.08e-21,39;UBERON:0002020,1.08e-20,34;UBERON:0010314,4.82e-19,92;UBERON:0003528,9.31e-17,29;UBERON:0002791,9.31e-17,29;UBERON:0001893,9.31e-17,29;UBERON:0011216,4.81e-12,194;UBERON:0000956,7.20e-12,21;UBERON:0001869,7.20e-12,21;UBERON:0000203,7.20e-12,21;UBERON:0002619,4.48e-10,17;UBERON:0000010,3.14e-09,11;UBERON:0002410,1.71e-07,9;UBERON:0004111,2.33e-07,122;UBERON:0003076,2.83e-07,12;UBERON:0003057,2.83e-07,12;UBERON:0000025,4.51e-07,114|phase1_expression=9.44878197918284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21112554392781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.881277725829041,1.01376931219515,0.550640256485045,0.782391344348039,27.4711697039363,25.2639110144643,18.2764105129826,10.7789544651529,25.8754615856949,0,0,0,0.257259436035947,0,0,13.9598357993122,8.46385566835253,8.87363964908651,3.72728985276045,0.889294796111139,0,0,0,26.0652096151012,54.1747810503392,9.12468588314603,7.02030879324791,9.46462326081219,23.7090317055157,20.7616428494517,26.4580126304301,28.370259421398,11.0306254393203,1.10115880999389,11.2364857514965,10.2916377281683,26.2453712583086,23.1463738314096,26.5665818983948,7.53794097303729,6.75315132038016,6.41752640662602,15.6153150301044,18.9354335462807,11.3703661953433,29.8361201732745,37.9369231736063,0,0,0,0,0,0,0.561777680527007,0,0,0,58.3091757875457,0,0,0,6.71122227134764,5.57391704045217,5.05524445014783,0.22836775943812,0,0.148442139064825,0.867426633830679,0.304465478312141,0.230615497256059,0,0.117588707135705,0,0,0,0,0,0,0,0,5.85561594023094,6.49284791121711,0,0,0,0,10.1857634795279,8.23501085073528,18.4711897605911,6.08385120672968,6.90431734791892,12.0517065844545,7.30085683804909,0,0,0,0.420883711772948,8.97831056442656,5.51765050640335,8.46292010085141,5.27466862425003,8.98081788797528,5.89323113310309,7.30873451565885,2.06962696591213,0,0,0,0.219195732427575,0.278047249225598,0,0.205782136407943,0.59710280045548,0,0,0,0.207125772535502,0.234526059981096,0,0,0,0,0,0,0,0,0,0.0810688095458557,0,0,0,7.78072809687271,12.0398396483763,0,0,0,1.16118335930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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:20674 | |||
|HGNC= | |||
|MCL_coexpression_id=3407 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q60I23 | |||
|association_with_transcript=-4bp_to_ENSMUST00000169607_5end | |||
|cluster_id=chr3:34548946..34548972,+ | |||
|description=CAGE_peak_2_at_Sox2_5end | |||
|id=chr3:34548946..34548972,+ | |||
|ontology_enrichment_celltype=CL:0000221!1.74e-27!44;CL:0000133!1.74e-27!44;CL:0002319!1.33e-26!43;CL:0000055!1.59e-22!50;CL:0000540!8.86e-20!33;CL:0000047!8.86e-20!33;CL:0000031!8.86e-20!33;CL:0000404!8.86e-20!33;CL:0000393!7.46e-17!39;CL:0000211!7.46e-17!39;CL:0000117!1.33e-13!23;CL:0000337!1.33e-13!23;CL:0002321!5.12e-13!70;CL:0000220!5.12e-13!70;CL:0000333!1.45e-07!10;CL:0000095!1.45e-07!10;CL:0000243!1.45e-07!10;CL:0000123!1.45e-07!10;CL:0000125!1.45e-07!10;CL:0000030!1.45e-07!10;CL:0000339!1.45e-07!10;CL:0000107!8.66e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,4.50e-30,44;CL:0000133,4.50e-30,44;CL:0002319,4.46e-29,43;CL:0000540,3.15e-22,33;CL:0000047,3.15e-22,33;CL:0000031,3.15e-22,33;CL:0000404,3.15e-22,33;CL:0000393,3.31e-17,39;CL:0000211,3.31e-17,39;CL:0000117,3.23e-15,23;CL:0000337,3.23e-15,23;CL:0002321,1.39e-14,70;CL:0000333,1.64e-07,10;CL:0000095,1.64e-07,10;CL:0000243,1.64e-07,10;CL:0000123,1.64e-07,10;CL:0000125,1.64e-07,10;CL:0000030,1.64e-07,10;CL:0000339,1.64e-07,10;CL:0000107,1.71e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!7.39e-43!75;UBERON:0001016!7.39e-43!75;UBERON:0001017!6.49e-41!73;UBERON:0005743!6.49e-41!73;UBERON:0004121!3.09e-40!102;UBERON:0000924!3.09e-40!102;UBERON:0006601!3.09e-40!102;UBERON:0002346!1.50e-28!71;UBERON:0003075!1.50e-28!71;UBERON:0007284!1.50e-28!71;UBERON:0000033!1.58e-28!63;UBERON:0001049!1.20e-26!52;UBERON:0005068!1.20e-26!52;UBERON:0006241!1.20e-26!52;UBERON:0007135!1.20e-26!52;UBERON:0000955!7.52e-24!50;UBERON:0006238!7.52e-24!50;UBERON:0002616!2.25e-23!49;UBERON:0003056!1.53e-22!49;UBERON:0003080!7.16e-20!40;UBERON:0002780!2.62e-19!39;UBERON:0001890!2.62e-19!39;UBERON:0006240!2.62e-19!39;UBERON:0002020!2.00e-18!34;UBERON:0002791!5.85e-15!29;UBERON:0003528!5.85e-15!29;UBERON:0001893!5.85e-15!29;UBERON:0007811!2.95e-14!86;UBERON:0000153!6.76e-12!94;UBERON:0000956!1.19e-10!21;UBERON:0001869!1.19e-10!21;UBERON:0000203!1.19e-10!21;UBERON:0002619!4.56e-09!17;UBERON:0000010!2.55e-08!11;UBERON:0004111!8.49e-08!122;UBERON:0003076!2.82e-07!12;UBERON:0003057!2.82e-07!12;UBERON:0002410!8.66e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.61e-47,75;UBERON:0001017,2.52e-45,73;UBERON:0004121,7.56e-45,95;UBERON:0000924,7.56e-45,95;UBERON:0006601,7.56e-45,95;UBERON:0002346,3.53e-34,64;UBERON:0003075,3.53e-34,64;UBERON:0007284,3.53e-34,64;UBERON:0010371,8.92e-30,73;UBERON:0000073,1.01e-29,54;UBERON:0001049,3.39e-29,52;UBERON:0005068,3.39e-29,52;UBERON:0006241,3.39e-29,52;UBERON:0007135,3.39e-29,52;UBERON:0000955,9.42e-25,47;UBERON:0006238,9.42e-25,47;UBERON:0003056,1.06e-24,49;UBERON:0002616,3.19e-24,46;UBERON:0003080,2.48e-22,40;UBERON:0002780,1.08e-21,39;UBERON:0001890,1.08e-21,39;UBERON:0006240,1.08e-21,39;UBERON:0002020,1.08e-20,34;UBERON:0010314,4.82e-19,92;UBERON:0003528,9.31e-17,29;UBERON:0002791,9.31e-17,29;UBERON:0001893,9.31e-17,29;UBERON:0011216,4.81e-12,194;UBERON:0000956,7.20e-12,21;UBERON:0001869,7.20e-12,21;UBERON:0000203,7.20e-12,21;UBERON:0002619,4.48e-10,17;UBERON:0000010,3.14e-09,11;UBERON:0002410,1.71e-07,9;UBERON:0004111,2.33e-07,122;UBERON:0003076,2.83e-07,12;UBERON:0003057,2.83e-07,12;UBERON:0000025,4.51e-07,114 | |||
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|short_description=p2@Sox2 | |||
}} |
Revision as of 09:52, 6 August 2015
Short description: | p2@Sox2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Sox2_5end |
Coexpression cluster: | MCL_coexpression_mm9:3407 |
Association with transcript: | -4bp_to_ENSMUST00000169607_5end |
EntrezGene: | 20674 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 4.50e-30 | 44 |
neurectodermal cell | 4.50e-30 | 44 |
neural cell | 4.46e-29 | 43 |
neuron | 3.15e-22 | 33 |
neuronal stem cell | 3.15e-22 | 33 |
neuroblast | 3.15e-22 | 33 |
electrically signaling cell | 3.15e-22 | 33 |
electrically responsive cell | 3.31e-17 | 39 |
electrically active cell | 3.31e-17 | 39 |
CNS neuron (sensu Vertebrata) | 3.23e-15 | 23 |
neuroblast (sensu Vertebrata) | 3.23e-15 | 23 |
embryonic cell | 1.39e-14 | 70 |
migratory neural crest cell | 1.64e-07 | 10 |
neuron associated cell | 1.64e-07 | 10 |
glial cell (sensu Vertebrata) | 1.64e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 1.64e-07 | 10 |
glial cell | 1.64e-07 | 10 |
glioblast | 1.64e-07 | 10 |
glioblast (sensu Vertebrata) | 1.64e-07 | 10 |
autonomic neuron | 1.71e-07 | 9 |