FFCP PHASE1:Mm9::chr16:35541361..35541425,+: Difference between revisions
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{{FFCP|EntrezGene=20357|HGNC=|MCL_coexpression_id=3042|UniProt=D3YWQ1,B1B1B0,Q60519|association_with_transcript=-22bp_to_ENSMUST00000089640,ENSMUST00000120756,NM_013661,uc007zbm.2,uc012aez.1_5end|description=CAGE_peak_1_at_Sema5b_5end|id=chr16:35541361..35541425,+|ontology_enrichment_celltype=CL:0000117!2.78e-11!23;CL:0000337!2.78e-11!23;CL:0000221!1.49e-07!44;CL:0000133!1.49e-07!44;CL:0002319!4.28e-07!43;CL:0000540!8.89e-07!33;CL:0000047!8.89e-07!33;CL:0000031!8.89e-07!33;CL:0000404!8.89e-07!33|ontology_enrichment_celltype_v019_2=CL:0000117,3.44e-12,23;CL:0000337,3.44e-12,23;CL:0000221,9.38e-07,44;CL:0000133,9.38e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!2.96e-16!71;UBERON:0003075!2.96e-16!71;UBERON:0007284!2.96e-16!71;UBERON:0004121!5.94e-16!102;UBERON:0000924!5.94e-16!102;UBERON:0006601!5.94e-16!102;UBERON:0001017!1.05e-13!73;UBERON:0005743!1.05e-13!73;UBERON:0000033!2.10e-13!63;UBERON:0000073!5.47e-13!75;UBERON:0001016!5.47e-13!75;UBERON:0001049!3.13e-12!52;UBERON:0005068!3.13e-12!52;UBERON:0006241!3.13e-12!52;UBERON:0007135!3.13e-12!52;UBERON:0003056!7.13e-12!49;UBERON:0000955!4.22e-11!50;UBERON:0006238!4.22e-11!50;UBERON:0002020!7.73e-11!34;UBERON:0002616!9.45e-11!49;UBERON:0003080!1.08e-09!40;UBERON:0000468!2.33e-09!333;UBERON:0002780!2.48e-09!39;UBERON:0001890!2.48e-09!39;UBERON:0006240!2.48e-09!39;UBERON:0000991!1.30e-08!18;UBERON:0005564!1.30e-08!18;UBERON:0002791!1.65e-08!29;UBERON:0003528!1.65e-08!29;UBERON:0001893!1.65e-08!29;UBERON:0004176!4.86e-08!17;UBERON:0009196!4.86e-08!17;UBERON:0009117!4.86e-08!17;UBERON:0000922!2.35e-07!328;UBERON:0000473!2.57e-07!14;UBERON:0003135!3.17e-07!15;UBERON:0003133!3.47e-07!24|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.30e-13,54;UBERON:0002346,2.02e-13,64;UBERON:0003075,2.02e-13,64;UBERON:0007284,2.02e-13,64;UBERON:0001017,2.44e-13,73;UBERON:0001049,1.05e-12,52;UBERON:0005068,1.05e-12,52;UBERON:0006241,1.05e-12,52;UBERON:0007135,1.05e-12,52;UBERON:0001016,2.45e-12,75;UBERON:0010371,3.13e-12,73;UBERON:0003056,3.77e-12,49;UBERON:0004121,4.76e-12,95;UBERON:0000924,4.76e-12,95;UBERON:0006601,4.76e-12,95;UBERON:0002020,3.45e-11,34;UBERON:0010314,4.00e-11,92;UBERON:0000955,1.50e-10,47;UBERON:0006238,1.50e-10,47;UBERON:0002616,3.52e-10,46;UBERON:0003080,8.71e-10,40;UBERON:0002780,2.11e-09,39;UBERON:0001890,2.11e-09,39;UBERON:0006240,2.11e-09,39;UBERON:0003528,1.12e-08,29;UBERON:0002791,1.12e-08,29;UBERON:0001893,1.12e-08,29;UBERON:0000991,1.97e-08,18;UBERON:0005564,1.97e-08,18;UBERON:0004176,8.08e-08,17;UBERON:0009196,8.08e-08,17;UBERON:0009117,8.08e-08,17;UBERON:0000473,5.30e-07,14;UBERON:0003135,6.17e-07,15|phase1_expression=35.0725975159499,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.52781385981954,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,50.3638111238831,0.219686182734472,0.58328969722285,5.5994568650145,12.9377307928474,0,0,0,0,0.286533439938757,0,18.2084814773638,16.398720357433,22.8179305262225,0.338844532069132,0,0,0,0,18.2756067416227,23.0530983192933,23.3301627694075,23.6260392080459,17.2466468308133,14.568200204594,13.0312439161452,25.6005770359254,31.8206963780545,36.7687514644008,5.50579404996943,4.97980618532232,4.45458946443106,13.8480602116704,15.0039735507952,10.4182674111352,4.18774498502071,1.68828783009504,3.51435969886663,9.1334861496837,10.1083893367363,10.2519695203915,0.227178579999552,0.226714680320357,0.869593466105033,0,0,0,0,0,1.12355536105401,0,0,0,20.8448261269487,0,0,0,0,0,0,0.34255163915718,0.258937883647172,14.1020032111584,9.54169297213747,8.8294988710521,7.61031140944993,7.83757730873637,9.05433044944927,4.90099706185734,0.741584903203122,0,0,3.07357014900077,0.883366073841574,0,0,1.46390398505774,2.93225389538837,0.510914110417183,0,0,0,6.5907881338122,2.74500361691176,12.8167439155122,4.34560800480691,5.37002460393694,4.1557608911912,6.65189178577806,6.21220119486929,0.746441823660558,3.0326731012041,1.05220927943237,2.86264974517948,3.44853156650209,4.68161537493908,4.9732589885786,17.6894897793452,21.6512187281396,22.6758173434544,3.88055056108524,3.44908788692548,4.72765200419548,1.93546236580344,3.94552318369635,2.22437799380478,2.43776516565517,3.2925141825271,20.1024609486678,0,0,0,1.44988040774851,1.64168241986767,0.540186184383045,2.13070262026689,2.36117078096885,0.771335564436891,0.697601834251224,1.60964040839772,0.934122738937356,1.31647879930784,0.32833492815819,0.405344047729279,0.730999937126662,0.219550115291051,0.268412837520744,3.78521907415429,9.8788427884113,0,0.528901133327089,4.47905326123991,4.18026009348789,4.63922860759536,4.63872106633688,2.66853652613844,3.80451252225118,0.474529061544512,1.15289268306808,1.00534083520108,1.39269530428806,1.16978452271472,0,0,0.199141273254367,2.84501851429623,4.45569199177942,3.38123207019241,2.8511185898344,3.49114476901726,2.87556861550306,1.07502113111237,0.590440591918409,0.156998727841375,0.370191491765402,0,0.667380422864376,0.589676985339609,0.224862112384854,0,0.2411771597524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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:20357 | |||
|HGNC= | |||
|MCL_coexpression_id=3042 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:D3YWQ1,uniprot:B1B1B0,uniprot:Q60519 | |||
|association_with_transcript=-22bp_to_ENSMUST00000089640,ENSMUST00000120756,NM_013661,uc007zbm.2,uc012aez.1_5end | |||
|cluster_id=chr16:35541361..35541425,+ | |||
|description=CAGE_peak_1_at_Sema5b_5end | |||
|id=chr16:35541361..35541425,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.78e-11!23;CL:0000337!2.78e-11!23;CL:0000221!1.49e-07!44;CL:0000133!1.49e-07!44;CL:0002319!4.28e-07!43;CL:0000540!8.89e-07!33;CL:0000047!8.89e-07!33;CL:0000031!8.89e-07!33;CL:0000404!8.89e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.44e-12,23;CL:0000337,3.44e-12,23;CL:0000221,9.38e-07,44;CL:0000133,9.38e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!2.96e-16!71;UBERON:0003075!2.96e-16!71;UBERON:0007284!2.96e-16!71;UBERON:0004121!5.94e-16!102;UBERON:0000924!5.94e-16!102;UBERON:0006601!5.94e-16!102;UBERON:0001017!1.05e-13!73;UBERON:0005743!1.05e-13!73;UBERON:0000033!2.10e-13!63;UBERON:0000073!5.47e-13!75;UBERON:0001016!5.47e-13!75;UBERON:0001049!3.13e-12!52;UBERON:0005068!3.13e-12!52;UBERON:0006241!3.13e-12!52;UBERON:0007135!3.13e-12!52;UBERON:0003056!7.13e-12!49;UBERON:0000955!4.22e-11!50;UBERON:0006238!4.22e-11!50;UBERON:0002020!7.73e-11!34;UBERON:0002616!9.45e-11!49;UBERON:0003080!1.08e-09!40;UBERON:0000468!2.33e-09!333;UBERON:0002780!2.48e-09!39;UBERON:0001890!2.48e-09!39;UBERON:0006240!2.48e-09!39;UBERON:0000991!1.30e-08!18;UBERON:0005564!1.30e-08!18;UBERON:0002791!1.65e-08!29;UBERON:0003528!1.65e-08!29;UBERON:0001893!1.65e-08!29;UBERON:0004176!4.86e-08!17;UBERON:0009196!4.86e-08!17;UBERON:0009117!4.86e-08!17;UBERON:0000922!2.35e-07!328;UBERON:0000473!2.57e-07!14;UBERON:0003135!3.17e-07!15;UBERON:0003133!3.47e-07!24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.30e-13,54;UBERON:0002346,2.02e-13,64;UBERON:0003075,2.02e-13,64;UBERON:0007284,2.02e-13,64;UBERON:0001017,2.44e-13,73;UBERON:0001049,1.05e-12,52;UBERON:0005068,1.05e-12,52;UBERON:0006241,1.05e-12,52;UBERON:0007135,1.05e-12,52;UBERON:0001016,2.45e-12,75;UBERON:0010371,3.13e-12,73;UBERON:0003056,3.77e-12,49;UBERON:0004121,4.76e-12,95;UBERON:0000924,4.76e-12,95;UBERON:0006601,4.76e-12,95;UBERON:0002020,3.45e-11,34;UBERON:0010314,4.00e-11,92;UBERON:0000955,1.50e-10,47;UBERON:0006238,1.50e-10,47;UBERON:0002616,3.52e-10,46;UBERON:0003080,8.71e-10,40;UBERON:0002780,2.11e-09,39;UBERON:0001890,2.11e-09,39;UBERON:0006240,2.11e-09,39;UBERON:0003528,1.12e-08,29;UBERON:0002791,1.12e-08,29;UBERON:0001893,1.12e-08,29;UBERON:0000991,1.97e-08,18;UBERON:0005564,1.97e-08,18;UBERON:0004176,8.08e-08,17;UBERON:0009196,8.08e-08,17;UBERON:0009117,8.08e-08,17;UBERON:0000473,5.30e-07,14;UBERON:0003135,6.17e-07,15 | |||
|phase1_expression=35.0725975159499,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.52781385981954,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,50.3638111238831,0.219686182734472,0.58328969722285,5.5994568650145,12.9377307928474,0,0,0,0,0.286533439938757,0,18.2084814773638,16.398720357433,22.8179305262225,0.338844532069132,0,0,0,0,18.2756067416227,23.0530983192933,23.3301627694075,23.6260392080459,17.2466468308133,14.568200204594,13.0312439161452,25.6005770359254,31.8206963780545,36.7687514644008,5.50579404996943,4.97980618532232,4.45458946443106,13.8480602116704,15.0039735507952,10.4182674111352,4.18774498502071,1.68828783009504,3.51435969886663,9.1334861496837,10.1083893367363,10.2519695203915,0.227178579999552,0.226714680320357,0.869593466105033,0,0,0,0,0,1.12355536105401,0,0,0,20.8448261269487,0,0,0,0,0,0,0.34255163915718,0.258937883647172,14.1020032111584,9.54169297213747,8.8294988710521,7.61031140944993,7.83757730873637,9.05433044944927,4.90099706185734,0.741584903203122,0,0,3.07357014900077,0.883366073841574,0,0,1.46390398505774,2.93225389538837,0.510914110417183,0,0,0,6.5907881338122,2.74500361691176,12.8167439155122,4.34560800480691,5.37002460393694,4.1557608911912,6.65189178577806,6.21220119486929,0.746441823660558,3.0326731012041,1.05220927943237,2.86264974517948,3.44853156650209,4.68161537493908,4.9732589885786,17.6894897793452,21.6512187281396,22.6758173434544,3.88055056108524,3.44908788692548,4.72765200419548,1.93546236580344,3.94552318369635,2.22437799380478,2.43776516565517,3.2925141825271,20.1024609486678,0,0,0,1.44988040774851,1.64168241986767,0.540186184383045,2.13070262026689,2.36117078096885,0.771335564436891,0.697601834251224,1.60964040839772,0.934122738937356,1.31647879930784,0.32833492815819,0.405344047729279,0.730999937126662,0.219550115291051,0.268412837520744,3.78521907415429,9.8788427884113,0,0.528901133327089,4.47905326123991,4.18026009348789,4.63922860759536,4.63872106633688,2.66853652613844,3.80451252225118,0.474529061544512,1.15289268306808,1.00534083520108,1.39269530428806,1.16978452271472,0,0,0.199141273254367,2.84501851429623,4.45569199177942,3.38123207019241,2.8511185898344,3.49114476901726,2.87556861550306,1.07502113111237,0.590440591918409,0.156998727841375,0.370191491765402,0,0.667380422864376,0.589676985339609,0.224862112384854,0,0.241177159752417,0.25462585178142,1.15078454980324,0.162135226775035,0,0,0.372140947668503,0.312037673114561,0,0.179397413521912,0,0,2.27389694124582,2.77040459951444,1.52770577197669,2.11221223459652,1.17254380209271,3.33261097240419,0.975668239288994,1.10344600874334,0.8858587585951,0.478364305972461,0.655453258862952,0.172684981865896,0.144649058581512,0,0,0,0,4.49541651965817,3.98519734413491,0,0,0.631016438832513,0.390438744296638,0,0.477937595905104,0.445597348164788,0.566153061577665,0,0.292255857911312,0,6.10510501201433,1.13552068166615,18.6968883850618,17.7546785695398,1.31976098378028,0,7.76898035695941,9.67435382287203,6.41257271170054,10.0402643579463,7.99331384654211,4.9101375701962,5.08947221268508,5.34746067577082,0.948110273807448,0,0,0.340439605753788,3.42116078659489,5.17434735131018,1.92903331528433,4.43350584105684,4.28085162244969,3.9491764944509,1.522324745573,2.81606049676452,0.42366414172764,0.220528398054962,0.49465875882444,1.29171541356724,1.86970067277283,1.19372344003136,0.492422699235184,0.874442509889552,3.15223013417866,0,3.09580301944834,1.11116716421827,0,0,0,0,0.139951452323658,0,0,2.37251995185852,4.67634774391752,2.91614420218863,2.92723614420256,0.218362563746178,1.88810084938749,1.57041565878138,0.785267825952089,0.388844919875379,0,6.76431526421028,24.0721639130806,25.1496905494788,32.2788972651119,23.7654075199025,28.21567295696,42.8353921057002,70.1801634308891,48.5498764691041,18.8435614244285,15.2655903316669,0,1.41907650703115,2.56777392912068,0.77952493786677,0.895133478337407,0.596044064343795,0.120195449519969,0,0.302899349844443,0.15241361331,0.201652370273681,0,0,0,0.226730383615211,0.665957860122194,2.69141569828427,0.335769232728157,0.19318959403219,1.68914227906064,0.549454872801795,1.71494703263253,0.501572104035363,8.471277639256,7.82552902062201,8.59343270159095,4.29632955859219,6.16574267793578,6.0431511791176,4.05013500139084,3.15224842256954,1.81256963593682,3.10656187051092,4.98179268404048,10.7736715818278,7.34154504742777,3.8897074730927,2.51535795153579,2.94149613520023,3.11145418922261,4.32673620201678,3.53011130550997,6.82282471762253,5.57654459758527,4.52703219326583,3.83930180626518,4.03358460150676,5.28406314391642,4.28664322154766,4.05595140806994,4.05109362973781,2.88460130562315,3.67997300335993,4.11443102862498,4.08194354166476,3.09967046931517,3.48831399917588,4.23492211868988,4.48457421825885,4.39027134894654,3.94604567156764,2.58027816307137,3.92799590160417,4.27086065247027,4.62971067165148,2.45538625901814,4.33823155320705,4.82266527452853,7.49431733813838,3.74290573512653,1.71896843238639,3.82576664137687,1.76473135295612,1.62307484934295 | |||
|short_description=p1@Sema5b | |||
}} |
Revision as of 09:01, 6 August 2015
Short description: | p1@Sema5b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Sema5b_5end |
Coexpression cluster: | MCL_coexpression_mm9:3042 |
Association with transcript: | -22bp_to_ENSMUST00000089640, ENSMUST00000120756, NM_013661, uc007zbm.2, uc012aez.1_5end |
EntrezGene: | 20357 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.44e-12 | 23 |
neuroblast (sensu Vertebrata) | 3.44e-12 | 23 |
ectodermal cell | 9.38e-07 | 44 |
neurectodermal cell | 9.38e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.30e-13 | 54 |
neurectoderm | 2.02e-13 | 64 |
neural plate | 2.02e-13 | 64 |
presumptive neural plate | 2.02e-13 | 64 |
central nervous system | 2.44e-13 | 73 |
neural tube | 1.05e-12 | 52 |
neural rod | 1.05e-12 | 52 |
future spinal cord | 1.05e-12 | 52 |
neural keel | 1.05e-12 | 52 |
nervous system | 2.45e-12 | 75 |
ecto-epithelium | 3.13e-12 | 73 |
pre-chordal neural plate | 3.77e-12 | 49 |
ectoderm-derived structure | 4.76e-12 | 95 |
ectoderm | 4.76e-12 | 95 |
presumptive ectoderm | 4.76e-12 | 95 |
gray matter | 3.45e-11 | 34 |
structure with developmental contribution from neural crest | 4.00e-11 | 92 |
brain | 1.50e-10 | 47 |
future brain | 1.50e-10 | 47 |
regional part of brain | 3.52e-10 | 46 |
anterior neural tube | 8.71e-10 | 40 |
regional part of forebrain | 2.11e-09 | 39 |
forebrain | 2.11e-09 | 39 |
future forebrain | 2.11e-09 | 39 |
brain grey matter | 1.12e-08 | 29 |
regional part of telencephalon | 1.12e-08 | 29 |
telencephalon | 1.12e-08 | 29 |
gonad | 1.97e-08 | 18 |
gonad primordium | 1.97e-08 | 18 |
external genitalia | 8.08e-08 | 17 |
indifferent external genitalia | 8.08e-08 | 17 |
indifferent gonad | 8.08e-08 | 17 |
testis | 5.30e-07 | 14 |
male reproductive organ | 6.17e-07 | 15 |