FFCP PHASE1:Mm9::chr3:30500978..30501018,+: Difference between revisions
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{{FFCP|EntrezGene=80732|HGNC=|UniProt=Q99MD8|association_with_transcript=0bp_to_ENSMUST00000047495,ENSMUST00000047502,NM_030557,uc008oux.1,uc008ouy.1,uc008ouz.1,uc008ova.1_5end|description=CAGE_peak_1_at_Mynn_5end|id=chr3:30500978..30501018,+|ontology_enrichment_celltype=CL:0000117!5.09e-10!23;CL:0000337!5.09e-10!23;CL:0000540!4.81e-09!33;CL:0000047!4.81e-09!33;CL:0000031!4.81e-09!33;CL:0000404!4.81e-09!33;CL:0000393!1.02e-07!39;CL:0000211!1.02e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,2.79e-10,23;CL:0000337,2.79e-10,23;CL:0000540,5.87e-09,33;CL:0000047,5.87e-09,33;CL:0000031,5.87e-09,33;CL:0000404,5.87e-09,33;CL:0000393,2.15e-07,39;CL:0000211,2.15e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!8.32e-19!71;UBERON:0003075!8.32e-19!71;UBERON:0007284!8.32e-19!71;UBERON:0001049!1.87e-16!52;UBERON:0005068!1.87e-16!52;UBERON:0006241!1.87e-16!52;UBERON:0007135!1.87e-16!52;UBERON:0000955!2.08e-16!50;UBERON:0006238!2.08e-16!50;UBERON:0001017!2.25e-16!73;UBERON:0005743!2.25e-16!73;UBERON:0003056!2.86e-16!49;UBERON:0000073!6.92e-16!75;UBERON:0001016!6.92e-16!75;UBERON:0002616!8.90e-16!49;UBERON:0003080!1.12e-15!40;UBERON:0002780!3.52e-15!39;UBERON:0001890!3.52e-15!39;UBERON:0006240!3.52e-15!39;UBERON:0000033!4.82e-15!63;UBERON:0004121!7.59e-15!102;UBERON:0000924!7.59e-15!102;UBERON:0006601!7.59e-15!102;UBERON:0002020!8.19e-14!34;UBERON:0002791!2.73e-12!29;UBERON:0003528!2.73e-12!29;UBERON:0001893!2.73e-12!29;UBERON:0000153!4.19e-11!94;UBERON:0007811!8.87e-10!86;UBERON:0000956!1.86e-09!21;UBERON:0001869!1.86e-09!21;UBERON:0000203!1.86e-09!21;UBERON:0000025!2.78e-08!114;UBERON:0002619!2.67e-07!17;UBERON:0004111!4.62e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.88e-18,64;UBERON:0003075,2.88e-18,64;UBERON:0007284,2.88e-18,64;UBERON:0000073,1.16e-17,54;UBERON:0001049,1.25e-16,52;UBERON:0005068,1.25e-16,52;UBERON:0006241,1.25e-16,52;UBERON:0007135,1.25e-16,52;UBERON:0001017,1.46e-16,73;UBERON:0003056,2.53e-16,49;UBERON:0001016,4.56e-16,75;UBERON:0000955,6.88e-16,47;UBERON:0006238,6.88e-16,47;UBERON:0003080,9.23e-16,40;UBERON:0002780,2.98e-15,39;UBERON:0001890,2.98e-15,39;UBERON:0006240,2.98e-15,39;UBERON:0002616,3.03e-15,46;UBERON:0010371,3.25e-15,73;UBERON:0004121,5.79e-14,95;UBERON:0000924,5.79e-14,95;UBERON:0006601,5.79e-14,95;UBERON:0002020,7.71e-14,34;UBERON:0010314,1.18e-13,92;UBERON:0003528,2.88e-12,29;UBERON:0002791,2.88e-12,29;UBERON:0001893,2.88e-12,29;UBERON:0000956,2.39e-09,21;UBERON:0001869,2.39e-09,21;UBERON:0000203,2.39e-09,21;UBERON:0000025,6.89e-08,114;UBERON:0002619,3.83e-07,17;UBERON:0004111,8.52e-07,122|phase1_expression=1.60148847104794,1.04692622291808,1.36499771816861,0.60492842261366,0.500895729946347,0.33575854382378,0.467225281191051,3.35720640948098,1.40788722151667,0.936258105287974,0.34243593645101,0.239316476986009,3.25281386869291,4.45844052336887,0,0.607425802169478,0.699561878128147,0.788655413395594,0.411343300817216,0.42438965179803,0.765389611359628,1.88652807281682,1.56719873483361,0.639969691173627,1.14704640533585,2.29692785646008,0.430761996159075,0.646413698057667,0,0.756090389279792,0.443461021310609,0,2.46025915033828,15.8481681015439,0.866554859253824,0.332469290716985,0.408338712524738,0.418531630736908,0,0.523523743973798,0,0,0,2.51793635951155,1.62203089951223,0.917733760808408,0,0.872100625521786,0.659058548203415,0.972149495371417,1.53985063787899,0,0.671130424230945,3.62681071005672,1.00828139742739,0.771778308107841,1.71920063963254,1.54701627683233,4.85559506063035,5.28990979272033,6.97214543856797,0.677689064138264,0,0,0,0,0,0.768436610643109,4.04389488003063,7.02030879324791,3.78584930432488,1.71390590642282,3.09215957332259,5.26710436624302,5.17565543498476,3.67687514644008,3.30347642998166,2.55374676170375,1.99688493233117,5.01167893374737,6.67859798297591,6.25096044668112,1.3959149950069,2.8138130501584,2.59757021220577,2.94628585473668,3.55929201997757,5.96478226640962,1.59025005999687,1.20914496170857,2.31891590961342,0.860423876981386,0,0,1.94932925234301,3.13618820968135,0.421333260395256,1.36344258062446,2.07828803682295,0.70667914902068,1.54927761754349,1.28326477414318,0,0,0.649473123033642,0,0,0.22836775943812,2.84831672011889,3.41416919849097,2.25530924795977,2.43572382649713,2.30615497256059,2.41156224884196,2.11659672844269,0.879666139307728,1.97755974187499,1.73519228303894,0.884610551949874,1.61766849947409,0.441683036920787,0,0,3.51336956413857,3.97948742945565,1.02182822083437,0.958520996047362,0.599902730993408,0.889491589511453,3.74476598512057,2.74500361691176,9.42407640846483,5.21472960576829,6.64860189058859,1.87009240103604,3.40706652442291,1.42575109390443,3.23458123586242,8.59257378674494,1.05220927943237,1.56144531555244,0.689706313300419,2.34080768746954,2.71268672104287,2.85753296435577,4.35586648968489,3.5606655332697,4.39795730256327,1.07783996466421,2.26927296201383,4.22282697993477,2.41115305670332,3.89266148915837,2.43776516565517,1.4404749548556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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:80732 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q99MD8 | |||
|association_with_transcript=0bp_to_ENSMUST00000047495,ENSMUST00000047502,NM_030557,uc008oux.1,uc008ouy.1,uc008ouz.1,uc008ova.1_5end | |||
|cluster_id=chr3:30500978..30501018,+ | |||
|description=CAGE_peak_1_at_Mynn_5end | |||
|id=chr3:30500978..30501018,+ | |||
|ontology_enrichment_celltype=CL:0000117!5.09e-10!23;CL:0000337!5.09e-10!23;CL:0000540!4.81e-09!33;CL:0000047!4.81e-09!33;CL:0000031!4.81e-09!33;CL:0000404!4.81e-09!33;CL:0000393!1.02e-07!39;CL:0000211!1.02e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.79e-10,23;CL:0000337,2.79e-10,23;CL:0000540,5.87e-09,33;CL:0000047,5.87e-09,33;CL:0000031,5.87e-09,33;CL:0000404,5.87e-09,33;CL:0000393,2.15e-07,39;CL:0000211,2.15e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!8.32e-19!71;UBERON:0003075!8.32e-19!71;UBERON:0007284!8.32e-19!71;UBERON:0001049!1.87e-16!52;UBERON:0005068!1.87e-16!52;UBERON:0006241!1.87e-16!52;UBERON:0007135!1.87e-16!52;UBERON:0000955!2.08e-16!50;UBERON:0006238!2.08e-16!50;UBERON:0001017!2.25e-16!73;UBERON:0005743!2.25e-16!73;UBERON:0003056!2.86e-16!49;UBERON:0000073!6.92e-16!75;UBERON:0001016!6.92e-16!75;UBERON:0002616!8.90e-16!49;UBERON:0003080!1.12e-15!40;UBERON:0002780!3.52e-15!39;UBERON:0001890!3.52e-15!39;UBERON:0006240!3.52e-15!39;UBERON:0000033!4.82e-15!63;UBERON:0004121!7.59e-15!102;UBERON:0000924!7.59e-15!102;UBERON:0006601!7.59e-15!102;UBERON:0002020!8.19e-14!34;UBERON:0002791!2.73e-12!29;UBERON:0003528!2.73e-12!29;UBERON:0001893!2.73e-12!29;UBERON:0000153!4.19e-11!94;UBERON:0007811!8.87e-10!86;UBERON:0000956!1.86e-09!21;UBERON:0001869!1.86e-09!21;UBERON:0000203!1.86e-09!21;UBERON:0000025!2.78e-08!114;UBERON:0002619!2.67e-07!17;UBERON:0004111!4.62e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.88e-18,64;UBERON:0003075,2.88e-18,64;UBERON:0007284,2.88e-18,64;UBERON:0000073,1.16e-17,54;UBERON:0001049,1.25e-16,52;UBERON:0005068,1.25e-16,52;UBERON:0006241,1.25e-16,52;UBERON:0007135,1.25e-16,52;UBERON:0001017,1.46e-16,73;UBERON:0003056,2.53e-16,49;UBERON:0001016,4.56e-16,75;UBERON:0000955,6.88e-16,47;UBERON:0006238,6.88e-16,47;UBERON:0003080,9.23e-16,40;UBERON:0002780,2.98e-15,39;UBERON:0001890,2.98e-15,39;UBERON:0006240,2.98e-15,39;UBERON:0002616,3.03e-15,46;UBERON:0010371,3.25e-15,73;UBERON:0004121,5.79e-14,95;UBERON:0000924,5.79e-14,95;UBERON:0006601,5.79e-14,95;UBERON:0002020,7.71e-14,34;UBERON:0010314,1.18e-13,92;UBERON:0003528,2.88e-12,29;UBERON:0002791,2.88e-12,29;UBERON:0001893,2.88e-12,29;UBERON:0000956,2.39e-09,21;UBERON:0001869,2.39e-09,21;UBERON:0000203,2.39e-09,21;UBERON:0000025,6.89e-08,114;UBERON:0002619,3.83e-07,17;UBERON:0004111,8.52e-07,122 | |||
|phase1_expression=1.60148847104794,1.04692622291808,1.36499771816861,0.60492842261366,0.500895729946347,0.33575854382378,0.467225281191051,3.35720640948098,1.40788722151667,0.936258105287974,0.34243593645101,0.239316476986009,3.25281386869291,4.45844052336887,0,0.607425802169478,0.699561878128147,0.788655413395594,0.411343300817216,0.42438965179803,0.765389611359628,1.88652807281682,1.56719873483361,0.639969691173627,1.14704640533585,2.29692785646008,0.430761996159075,0.646413698057667,0,0.756090389279792,0.443461021310609,0,2.46025915033828,15.8481681015439,0.866554859253824,0.332469290716985,0.408338712524738,0.418531630736908,0,0.523523743973798,0,0,0,2.51793635951155,1.62203089951223,0.917733760808408,0,0.872100625521786,0.659058548203415,0.972149495371417,1.53985063787899,0,0.671130424230945,3.62681071005672,1.00828139742739,0.771778308107841,1.71920063963254,1.54701627683233,4.85559506063035,5.28990979272033,6.97214543856797,0.677689064138264,0,0,0,0,0,0.768436610643109,4.04389488003063,7.02030879324791,3.78584930432488,1.71390590642282,3.09215957332259,5.26710436624302,5.17565543498476,3.67687514644008,3.30347642998166,2.55374676170375,1.99688493233117,5.01167893374737,6.67859798297591,6.25096044668112,1.3959149950069,2.8138130501584,2.59757021220577,2.94628585473668,3.55929201997757,5.96478226640962,1.59025005999687,1.20914496170857,2.31891590961342,0.860423876981386,0,0,1.94932925234301,3.13618820968135,0.421333260395256,1.36344258062446,2.07828803682295,0.70667914902068,1.54927761754349,1.28326477414318,0,0,0.649473123033642,0,0,0.22836775943812,2.84831672011889,3.41416919849097,2.25530924795977,2.43572382649713,2.30615497256059,2.41156224884196,2.11659672844269,0.879666139307728,1.97755974187499,1.73519228303894,0.884610551949874,1.61766849947409,0.441683036920787,0,0,3.51336956413857,3.97948742945565,1.02182822083437,0.958520996047362,0.599902730993408,0.889491589511453,3.74476598512057,2.74500361691176,9.42407640846483,5.21472960576829,6.64860189058859,1.87009240103604,3.40706652442291,1.42575109390443,3.23458123586242,8.59257378674494,1.05220927943237,1.56144531555244,0.689706313300419,2.34080768746954,2.71268672104287,2.85753296435577,4.35586648968489,3.5606655332697,4.39795730256327,1.07783996466421,2.26927296201383,4.22282697993477,2.41115305670332,3.89266148915837,2.43776516565517,1.4404749548556,2.58744546864041,0,0,0.284163499395593,1.24275463521301,1.64168241986767,1.44049649168812,2.3674473558521,1.96764231747404,1.07986979021165,1.16266972375204,1.07309360559848,0.467061369468678,2.13927804887525,2.13417703302824,1.78351381000883,0.438599962275997,1.53685080703735,0.805238512562231,5.46753866266731,6.07137213037778,0.991256348951394,2.11560453330835,1.70630600428187,1.85789337488351,1.9330119198314,1.81515172161008,1.77902435075896,0.951128130562796,1.89811624617805,0.823494773620054,1.75934646160189,2.38747766449381,3.11942539390592,0.898819408654221,0.864552199498777,1.1948476395262,1.13800740571849,1.71372768914593,2.25415471346161,0.814605311381257,1.93952487167626,1.61312385747733,3.09859031908861,4.72352473534727,5.18095801876537,3.33172342588861,1.77871576252289,1.16791574001266,0.786235980452812,1.57403478669398,0.811440485554012,0.964708639009667,1.52775511068852,0.575392274901621,0.810676133875177,2.19649130550465,0,0.372140947668503,2.18426371180192,1.76805214562978,1.07638448113147,0.964887042726734,1.47802552133284,2.84237117655727,0.814824882210129,1.52770577197669,2.34690248288502,1.84256883185997,2.61848004974615,1.36593553500459,1.7339865851681,1.7717175171902,2.23236676120482,1.47476983244164,2.24490476425664,1.73578870297814,3.01582567878545,0.54390568381871,0.983528546038072,0.275936746304732,2.56880943980467,2.34423373184406,1.63934945376675,0.757412781613119,3.47059041357882,1.95219372148319,2.58508077279359,1.67278158566786,0.891194696329576,1.41538265394416,0.809621403349789,3.21481443702443,2.76701444562566,6.10510501201433,1.56134093729095,0.890328018336276,0.977321756121456,2.63952196756057,2.65490276679926,2.6705869977048,0.604647113929502,0.754420319023592,0.295301892880773,2.15204603560749,1.80899805217755,1.09060118843252,0.356497378384721,1.8962205476149,0,1.03135543248187,7.14923172082955,2.70091641046965,2.19909762430683,3.42939256050548,4.25616560741457,2.67553226403106,3.78462747384878,1.8267896946876,0.469343416127421,2.1183207086382,0.661585194164886,1.48397627647332,0.807322133479528,1.32688434841943,2.02932984805332,1.96969079694074,2.04036585640896,1.48340241608408,1.02522528478712,1.03193433981611,0.370389054739423,2.44878994106098,0.683471138605126,1.83022538565218,0.509935289981566,1.25956307091292,1.24379976423981,0.954670618015114,1.26534397432454,1.82987520414164,1.08005340821801,1.04544148007234,0.436725127492355,0.944050424693745,1.07449492442937,1.83229159388821,0.648074866458964,0,0,2.54178128274764,2.15096037594227,3.11121901350476,1.6790777052105,2.70329800785245,1.5256441023948,3.6457227756306,3.46035836604846,1.44950472495604,1.4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| |||
|short_description=p1@Mynn | |||
}} |
Revision as of 08:51, 6 August 2015
Short description: | p1@Mynn |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Mynn_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000047495, ENSMUST00000047502, NM_030557, uc008oux.1, uc008ouy.1, uc008ouz.1, uc008ova.1_5end |
EntrezGene: | 80732 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.79e-10 | 23 |
neuroblast (sensu Vertebrata) | 2.79e-10 | 23 |
neuron | 5.87e-09 | 33 |
neuronal stem cell | 5.87e-09 | 33 |
neuroblast | 5.87e-09 | 33 |
electrically signaling cell | 5.87e-09 | 33 |
electrically responsive cell | 2.15e-07 | 39 |
electrically active cell | 2.15e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 2.88e-18 | 64 |
neural plate | 2.88e-18 | 64 |
presumptive neural plate | 2.88e-18 | 64 |
regional part of nervous system | 1.16e-17 | 54 |
neural tube | 1.25e-16 | 52 |
neural rod | 1.25e-16 | 52 |
future spinal cord | 1.25e-16 | 52 |
neural keel | 1.25e-16 | 52 |
central nervous system | 1.46e-16 | 73 |
pre-chordal neural plate | 2.53e-16 | 49 |
nervous system | 4.56e-16 | 75 |
brain | 6.88e-16 | 47 |
future brain | 6.88e-16 | 47 |
anterior neural tube | 9.23e-16 | 40 |
regional part of forebrain | 2.98e-15 | 39 |
forebrain | 2.98e-15 | 39 |
future forebrain | 2.98e-15 | 39 |
regional part of brain | 3.03e-15 | 46 |
ecto-epithelium | 3.25e-15 | 73 |
ectoderm-derived structure | 5.79e-14 | 95 |
ectoderm | 5.79e-14 | 95 |
presumptive ectoderm | 5.79e-14 | 95 |
gray matter | 7.71e-14 | 34 |
structure with developmental contribution from neural crest | 1.18e-13 | 92 |
brain grey matter | 2.88e-12 | 29 |
regional part of telencephalon | 2.88e-12 | 29 |
telencephalon | 2.88e-12 | 29 |
cerebral cortex | 2.39e-09 | 21 |
cerebral hemisphere | 2.39e-09 | 21 |
pallium | 2.39e-09 | 21 |
tube | 6.89e-08 | 114 |
regional part of cerebral cortex | 3.83e-07 | 17 |
anatomical conduit | 8.52e-07 | 122 |