FFCP PHASE1:Mm9::chr13:78339776..78339811,-: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=22|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr13:78339776..78339811,-|id=chr13:78339776..78339811,-|ontology_enrichment_celltype=CL:0000221!7.41e-14!44;CL:0000133!7.41e-14!44;CL:0000540!8.45e-14!33;CL:0000047!8.45e-14!33;CL:0000031!8.45e-14!33;CL:0000404!8.45e-14!33;CL:0002319!3.33e-13!43;CL:0000117!2.33e-12!23;CL:0000337!2.33e-12!23;CL:0000393!3.14e-11!39;CL:0000211!3.14e-11!39;CL:0000055!1.47e-10!50|ontology_enrichment_celltype_v019_2=CL:0000221,9.07e-17,44;CL:0000133,9.07e-17,44;CL:0000540,3.03e-16,33;CL:0000047,3.03e-16,33;CL:0000031,3.03e-16,33;CL:0000404,3.03e-16,33;CL:0002319,5.60e-16,43;CL:0000117,1.62e-14,23;CL:0000337,1.62e-14,23;CL:0000393,8.76e-12,39;CL:0000211,8.76e-12,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.05e-25!75;UBERON:0001016!1.05e-25!75;UBERON:0001017!1.73e-24!73;UBERON:0005743!1.73e-24!73;UBERON:0004121!2.25e-23!102;UBERON:0000924!2.25e-23!102;UBERON:0006601!2.25e-23!102;UBERON:0002346!1.49e-22!71;UBERON:0003075!1.49e-22!71;UBERON:0007284!1.49e-22!71;UBERON:0000033!3.37e-21!63;UBERON:0003056!5.62e-20!49;UBERON:0001049!3.07e-19!52;UBERON:0005068!3.07e-19!52;UBERON:0006241!3.07e-19!52;UBERON:0007135!3.07e-19!52;UBERON:0000955!3.97e-18!50;UBERON:0006238!3.97e-18!50;UBERON:0002616!1.44e-17!49;UBERON:0003080!1.03e-16!40;UBERON:0002020!1.58e-16!34;UBERON:0002780!1.71e-16!39;UBERON:0001890!1.71e-16!39;UBERON:0006240!1.71e-16!39;UBERON:0002791!2.73e-14!29;UBERON:0003528!2.73e-14!29;UBERON:0001893!2.73e-14!29;UBERON:0000956!2.03e-11!21;UBERON:0001869!2.03e-11!21;UBERON:0000203!2.03e-11!21;UBERON:0000153!3.18e-11!94;UBERON:0007811!3.39e-11!86;UBERON:0002619!5.82e-09!17|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.35e-30,75;UBERON:0001017,6.77e-29,73;UBERON:0004121,1.26e-27,95;UBERON:0000924,1.26e-27,95;UBERON:0006601,1.26e-27,95;UBERON:0002346,3.48e-25,64;UBERON:0003075,3.48e-25,64;UBERON:0007284,3.48e-25,64;UBERON:0000073,3.50e-23,54;UBERON:0001049,2.45e-22,52;UBERON:0005068,2.45e-22,52;UBERON:0006241,2.45e-22,52;UBERON:0007135,2.45e-22,52;UBERON:0010371,6.06e-22,73;UBERON:0003056,1.63e-21,49;UBERON:0000955,7.98e-20,47;UBERON:0006238,7.98e-20,47;UBERON:0002020,1.60e-19,34;UBERON:0002616,3.66e-19,46;UBERON:0003080,4.97e-19,40;UBERON:0002780,9.21e-19,39;UBERON:0001890,9.21e-19,39;UBERON:0006240,9.21e-19,39;UBERON:0003528,7.78e-17,29;UBERON:0002791,7.78e-17,29;UBERON:0001893,7.78e-17,29;UBERON:0010314,1.82e-15,92;UBERON:0000956,2.18e-13,21;UBERON:0001869,2.18e-13,21;UBERON:0000203,2.18e-13,21;UBERON:0002619,1.93e-10,17;UBERON:0002021,4.82e-07,10;UBERON:0000411,4.82e-07,10;UBERON:0001950,4.82e-07,10|phase1_expression=15.0539916278506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.87095238332354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251793635951155,0.608261587317087,0.550640256485045,2.34717403304412,0,1.97717564461025,1.1665793944457,1.1198913730029,0,0,0,0,0.257259436035947,0,0,36.6192794155872,41.7902873624906,33.5930643858275,1.69422266034566,0.889294796111139,0,0,0,1.19840044207362,1.15265491596466,27.2703680371296,29.7013064329719,17.4569717921647,6.85562362569129,7.28866185140325,48.016393292262,34.3126786245286,47.7993769037211,4.40463523997555,7.78892762319645,3.68655679814984,47.6109498706,48.3054758220723,45.3194632384381,1.95428099300967,1.12552522006336,1.98637722109853,3.83017161115768,11.10499110233,10.0655700745662,8.78423842664935,9.44644501334819,1.44932244350839,0,0,0,0,0,0.280888840263504,0.170430322578058,0.259786004602869,0.70667914902068,34.0841075859567,0,0,0,0,0,0,0.11418387971906,1.03575153458869,0.742210695324124,2.4287945747259,1.82679286987285,1.38369298353635,0.60289056221049,0.470354828542819,0.376999773989026,0,0,0,0,0,0,0,4.68449275218475,3.14170060220183,0,0,0,0,4.04434726393021,4.11750542536764,14.3245961408665,8.69121600961382,7.67146371990992,13.2984348518118,8.11206315338788,2.74966282395854,0.124406970610093,0.252722758433675,0.631325567659422,17.9566211288531,8.27647575960503,11.7040384373477,9.49440352365005,5.23881043465224,7.68682321709099,4.68508622798644,0.776110112217047,0.215567992932842,3.40390944302075,0.703804496655795,0.219195732427575,1.39023624612799,0.348252166522167,0.205782136407943,3.18454826909589,0,0,0,1.03562886267751,1.87620847984877,0.540186184383045,0.710234206755631,0.196764231747404,0,0.465067889500816,0.268273401399619,0,0,0.164167464079095,0.162137619091711,0.146199987425332,0.219550115291051,0,4.83666881697493,27.0639130557518,0,0,3.62590025909898,2.09013004674395,0.77320476793256,0.201683524623343,0,0,0,0.329397909448022,0,0,0,0,0,0,7.01771233526402,6.51216521875454,6.76246414038483,5.7022371796688,2.90928730751439,1.82353131714828,0.632365371242573,0.147610147979602,0.156998727841375,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.22135400009824,0.488894929326078,0.509235257325564,0,0,0.238043640886014,0.195133647857799,0.157635144106191,0.44292937929755,0,0,0.34536996373179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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr13:78339776..78339811,- | |||
|description=CAGE_peak_at_chr13:78339776..78339811,- | |||
|id=chr13:78339776..78339811,- | |||
|ontology_enrichment_celltype=CL:0000221!7.41e-14!44;CL:0000133!7.41e-14!44;CL:0000540!8.45e-14!33;CL:0000047!8.45e-14!33;CL:0000031!8.45e-14!33;CL:0000404!8.45e-14!33;CL:0002319!3.33e-13!43;CL:0000117!2.33e-12!23;CL:0000337!2.33e-12!23;CL:0000393!3.14e-11!39;CL:0000211!3.14e-11!39;CL:0000055!1.47e-10!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,9.07e-17,44;CL:0000133,9.07e-17,44;CL:0000540,3.03e-16,33;CL:0000047,3.03e-16,33;CL:0000031,3.03e-16,33;CL:0000404,3.03e-16,33;CL:0002319,5.60e-16,43;CL:0000117,1.62e-14,23;CL:0000337,1.62e-14,23;CL:0000393,8.76e-12,39;CL:0000211,8.76e-12,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.05e-25!75;UBERON:0001016!1.05e-25!75;UBERON:0001017!1.73e-24!73;UBERON:0005743!1.73e-24!73;UBERON:0004121!2.25e-23!102;UBERON:0000924!2.25e-23!102;UBERON:0006601!2.25e-23!102;UBERON:0002346!1.49e-22!71;UBERON:0003075!1.49e-22!71;UBERON:0007284!1.49e-22!71;UBERON:0000033!3.37e-21!63;UBERON:0003056!5.62e-20!49;UBERON:0001049!3.07e-19!52;UBERON:0005068!3.07e-19!52;UBERON:0006241!3.07e-19!52;UBERON:0007135!3.07e-19!52;UBERON:0000955!3.97e-18!50;UBERON:0006238!3.97e-18!50;UBERON:0002616!1.44e-17!49;UBERON:0003080!1.03e-16!40;UBERON:0002020!1.58e-16!34;UBERON:0002780!1.71e-16!39;UBERON:0001890!1.71e-16!39;UBERON:0006240!1.71e-16!39;UBERON:0002791!2.73e-14!29;UBERON:0003528!2.73e-14!29;UBERON:0001893!2.73e-14!29;UBERON:0000956!2.03e-11!21;UBERON:0001869!2.03e-11!21;UBERON:0000203!2.03e-11!21;UBERON:0000153!3.18e-11!94;UBERON:0007811!3.39e-11!86;UBERON:0002619!5.82e-09!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.35e-30,75;UBERON:0001017,6.77e-29,73;UBERON:0004121,1.26e-27,95;UBERON:0000924,1.26e-27,95;UBERON:0006601,1.26e-27,95;UBERON:0002346,3.48e-25,64;UBERON:0003075,3.48e-25,64;UBERON:0007284,3.48e-25,64;UBERON:0000073,3.50e-23,54;UBERON:0001049,2.45e-22,52;UBERON:0005068,2.45e-22,52;UBERON:0006241,2.45e-22,52;UBERON:0007135,2.45e-22,52;UBERON:0010371,6.06e-22,73;UBERON:0003056,1.63e-21,49;UBERON:0000955,7.98e-20,47;UBERON:0006238,7.98e-20,47;UBERON:0002020,1.60e-19,34;UBERON:0002616,3.66e-19,46;UBERON:0003080,4.97e-19,40;UBERON:0002780,9.21e-19,39;UBERON:0001890,9.21e-19,39;UBERON:0006240,9.21e-19,39;UBERON:0003528,7.78e-17,29;UBERON:0002791,7.78e-17,29;UBERON:0001893,7.78e-17,29;UBERON:0010314,1.82e-15,92;UBERON:0000956,2.18e-13,21;UBERON:0001869,2.18e-13,21;UBERON:0000203,2.18e-13,21;UBERON:0002619,1.93e-10,17;UBERON:0002021,4.82e-07,10;UBERON:0000411,4.82e-07,10;UBERON:0001950,4.82e-07,10 | |||
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|short_description=p@chr13:78339776..78339811,- | |||
}} |
Latest revision as of 08:36, 6 August 2015
Short description: | p@chr13:78339776..78339811, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr13:78339776..78339811, - |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 9.07e-17 | 44 |
neurectodermal cell | 9.07e-17 | 44 |
neuron | 3.03e-16 | 33 |
neuronal stem cell | 3.03e-16 | 33 |
neuroblast | 3.03e-16 | 33 |
electrically signaling cell | 3.03e-16 | 33 |
neural cell | 5.60e-16 | 43 |
CNS neuron (sensu Vertebrata) | 1.62e-14 | 23 |
neuroblast (sensu Vertebrata) | 1.62e-14 | 23 |
electrically responsive cell | 8.76e-12 | 39 |
electrically active cell | 8.76e-12 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.35e-30 | 75 |
central nervous system | 6.77e-29 | 73 |
ectoderm-derived structure | 1.26e-27 | 95 |
ectoderm | 1.26e-27 | 95 |
presumptive ectoderm | 1.26e-27 | 95 |
neurectoderm | 3.48e-25 | 64 |
neural plate | 3.48e-25 | 64 |
presumptive neural plate | 3.48e-25 | 64 |
regional part of nervous system | 3.50e-23 | 54 |
neural tube | 2.45e-22 | 52 |
neural rod | 2.45e-22 | 52 |
future spinal cord | 2.45e-22 | 52 |
neural keel | 2.45e-22 | 52 |
ecto-epithelium | 6.06e-22 | 73 |
pre-chordal neural plate | 1.63e-21 | 49 |
brain | 7.98e-20 | 47 |
future brain | 7.98e-20 | 47 |
gray matter | 1.60e-19 | 34 |
regional part of brain | 3.66e-19 | 46 |
anterior neural tube | 4.97e-19 | 40 |
regional part of forebrain | 9.21e-19 | 39 |
forebrain | 9.21e-19 | 39 |
future forebrain | 9.21e-19 | 39 |
brain grey matter | 7.78e-17 | 29 |
regional part of telencephalon | 7.78e-17 | 29 |
telencephalon | 7.78e-17 | 29 |
structure with developmental contribution from neural crest | 1.82e-15 | 92 |
cerebral cortex | 2.18e-13 | 21 |
cerebral hemisphere | 2.18e-13 | 21 |
pallium | 2.18e-13 | 21 |
regional part of cerebral cortex | 1.93e-10 | 17 |
occipital lobe | 4.82e-07 | 10 |
visual cortex | 4.82e-07 | 10 |
neocortex | 4.82e-07 | 10 |