FFCP PHASE1:Mm9::chr1:65003305..65003356,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=241075|HGNC=|MCL_coexpression_id=1|UniProt=D3Z0F2|association_with_transcript=0bp_to_ENSMUST00000123225_5end|description=CAGE_peak_1_at_Plekhm3_5end|id=chr1:65003305..65003356,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!3.53e-11!71;UBERON:0003075!3.53e-11!71;UBERON:0007284!3.53e-11!71;UBERON:0000033!2.18e-10!63;UBERON:0004121!2.59e-10!102;UBERON:0000924!2.59e-10!102;UBERON:0006601!2.59e-10!102;UBERON:0003056!2.46e-08!49;UBERON:0000955!3.91e-08!50;UBERON:0006238!3.91e-08!50;UBERON:0000153!8.03e-08!94;UBERON:0007811!9.12e-08!86;UBERON:0002616!1.27e-07!49;UBERON:0000475!4.22e-07!200;UBERON:0000062!6.62e-07!269;UBERON:0002021!8.90e-07!10;UBERON:0000411!8.90e-07!10;UBERON:0001950!8.90e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0010371,2.43e-10,73;UBERON:0010314,6.59e-10,92;UBERON:0002346,1.25e-09,64;UBERON:0003075,1.25e-09,64;UBERON:0007284,1.25e-09,64;UBERON:0004121,8.29e-09,95;UBERON:0000924,8.29e-09,95;UBERON:0006601,8.29e-09,95;UBERON:0003056,2.46e-08,49;UBERON:0000073,2.30e-07,54;UBERON:0000955,7.39e-07,47;UBERON:0006238,7.39e-07,47;UBERON:0002021,8.90e-07,10;UBERON:0000411,8.90e-07,10;UBERON:0001950,8.90e-07,10|phase1_expression=4.96461426024861,9.42233600626275,9.55498402718026,7.56160528267075,8.5152274090879,2.51818907867835,3.03696432774183,4.39019299701359,1.97104211012333,0.70219357896598,0.856089841127525,0.478632953972018,6.50562773738582,7.16847299835779,4.33042690360362,4.25198061518635,2.79824751251259,12.3030244489713,16.0423887318714,15.2780274647291,12.5864069423583,0.198581902401771,0,3.99981056983517,4.12936705920906,8.6134794617253,2.58457197695445,4.30942465371778,5.32065574477847,3.2763916868791,1.99557459589774,2.54012269383853,1.84519436275371,0,3.17736781726402,0.498703936075477,0.816677425049476,0.837063261473815,2.3440060335714,2.61761871986899,1.17646297606203,1.36609096991689,0.485510353031154,14.1004436132647,15.2065396829272,10.6457116253775,1.56478268869608,2.61630187656536,3.07560655828261,7.19390626574849,2.79972843250725,5.75010257459886,8.22134769682908,2.17608642603403,6.38578218370682,5.65970759279083,7.16333599846892,4.12537673821954,4.45096213891115,5.81890077199236,5.07065122804943,1.69422266034566,2.66788438833342,6.29929802096979,7.9109309005358,4.2628806896766,2.39680088414724,1.15265491596466,5.39185984004084,5.40023753326763,5.25812403378455,5.71301968807607,5.74258206474195,6.36952155917761,6.13411014516713,1.83843757322004,17.6185409599022,21.068410784056,22.733766921924,7.12185953743047,6.95306091378313,9.89735404057844,17.588528937087,19.1339287410771,20.933359945423,7.07108605136802,9.39653093274079,8.20157561631323,4.39211921332468,8.69072941228034,10.7249860819621,0.860423876981386,1.3599426674155,1.07940638327563,1.94932925234301,2.24013443548668,5.33688796500657,7.49893419343454,2.33807404142582,2.12003744706204,6.4787973097273,7.69958864485907,7.64415719119937,7.11066703153331,4.76280290224671,6.08063677140237,5.56076889516262,5.02409070763864,20.1971549244794,16.1801931580659,6.59244241711316,8.52503339273995,8.76338889573022,11.9070886036572,17.2855399489486,8.54532821041793,5.6854842578906,10.2665543413137,7.07688441559899,6.63244084784378,7.95029466457417,5.81850303762267,3.72783522436244,30.4492028892009,33.7209197969663,7.40825460104915,5.15205035375457,5.99902730993408,5.84523044536098,26.9623150928681,21.5025283324754,6.28271760564322,28.6810128317256,21.9915293304084,22.4411088124325,21.2536054618763,7.84163101647435,11.1966273549084,6.57079171927554,19.5710925974421,7.28674480591141,7.12696523743766,8.46292010085141,15.8240058727501,19.7305847538851,25.1102891758306,23.0506242416933,32.0792179716379,6.03590380211958,10.0226222488944,7.38994721488585,4.82230611340665,5.83899223373756,6.268538997399,8.43706759272568,4.57778813682534,1.40442637462647,2.05878325691772,1.70498099637356,5.59239585845855,6.0976775595085,7.56260658136262,6.15536312521547,7.47704080640135,4.78228049950873,6.97601834251224,4.82892122519315,8.52386999280337,6.91151369636618,8.86504306027114,9.97146357414026,8.04099930839328,8.34290438105992,9.12603647570528,21.449574753541,6.79170441703277,33.0418782983798,7.40461586657924,4.26576501070468,7.89604684325491,5.15469845288373,4.63872106633688,3.33567065767305,3.23383564391351,6.16887780007865,3.45867804920423,5.7807098024062,5.17286827306992,4.09424582950152,2.69645822596266,7.78096979548899,9.35963984295526,3.22435431620239,6.740662243974,6.76246414038483,8.14605311381257,7.37019451236978,7.5746685481544,10.3707920883782,6.9376769550413,8.47793130343424,8.02081565491703,2.96452627087149,4.83850806576673,4.71741588271687,4.27238013531222,2.23146133527353,5.06472035480075,3.05551022137704,2.5892652370573,5.5125977103512,2.47105271869273,4.31304619582064,4.83783231969054,2.49630138491648,5.55673531483646,3.22915344339442,3.85954817090694,16.4430339248278,5.30575952957357,6.02970412835496,8.31750920298422,9.38760993154008,10.0503754465089,9.04565835366852,10.1469496886055,12.2955412402829,15.5025282754142,11.9591076493115,17.8611013040154,14.1601685130034,19.238324791341,1.50791283939272,16.86107619838,6.88469982226651,4.96686143348518,28.0963532478636,28.3652281553132,3.44263385291018,8.83648245215305,6.31016438832513,9.37052986311932,12.0637102730367,5.73525115086125,6.90675889655422,5.94460714656548,8.50102473517278,6.72188473196017,9.88219444866309,33.0960955914461,11.071326646245,3.73937767701236,8.47012188638596,12.0428189769951,7.96470830039777,2.18502572539483,3.32555912661226,3.20628635585027,3.54362271456927,6.45613810682248,8.26970538138308,5.08947221268508,7.84294232446387,6.32073515871632,13.7044191147498,9.28219889233682,24.1712120085189,6.66226047915848,2.58717367565509,4.92975180572662,7.27094957933322,7.66985915688903,8.22745103010605,7.30715877875038,9.1521966144847,12.0744280392378,15.6575162619023,12.5313552235525,15.0161916827192,13.932285658404,11.8178620563105,13.1312719796049,6.99554007911642,22.8073121472927,5.80960994712699,5.57244543500701,6.85219751267933,6.96963290917357,6.97140561377228,6.17701067657611,6.62915876976036,7.41742697315387,7.73919853304773,2.86401185404534,4.9032079005076,4.87966721104437,4.96824567780286,6.27264888043406,7.42432716737004,7.95699643670442,9.33984049696296,7.59092231753686,7.64728342421578,5.59205381778233,4.50954350947352,8.82147621659475,6.45288112782681,8.16694991045,7.23295011475294,12.3337971608268,10.0927225235348,9.89553324814021,15.0997455973024,13.2871266454303,12.3852902690882,9.16432249821717,6.08175645870493,8.42229848751584,7.01572444080093,5.72885426135941,8.34461690081313,8.41368146639782,5.90758108698309,7.26958439626663,7.23964663222498,6.65452821903147,6.91950953252242,6.44619338990207,10.2851673919781,11.5632495643758,2.66383144048878,4.12683740403588,4.02923079273788,12.7505132061246,9.19644129710792,8.05867146775966,14.3626813982974,8.02515366456581,22.0253218620656,17.0320337507655,12.0308057822273,18.7319968754619,26.0331357512844,21.9064230243013,19.5756525067224,18.9134905354173,26.2822597210839,28.4768171463501,4.25528125095124,5.58634822761443,5.46347538413229,4.86213434136588,3.98265008993166,2.94149613520023,6.88964856185007,4.94484137373346,6.09746498224449,4.29585259998456,5.32306529769503,7.35642731405697,7.30403758265083,7.93911889820379,8.61532034334199,8.09699275181225,8.11190281613988,6.94473193669338,6.1812885120496,7.35994600671987,5.14303878578123,6.03417740941747,7.15308569841963,6.24989591519013,7.81107857447244,7.36147088657586,4.93905526756486,5.5244639401947,8.28405094459757,5.05028044491965,6.28765596058123,7.97886307242064,4.50154147486658,6.50734732981057,6.94463799532109,5.49583271463481,5.14649538579898,10.9584237564632,6.69509162240952,8.16188250742207,5.79669589051054|short_description=p1@Plekhm3}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:241075 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:D3Z0F2 | |||
|association_with_transcript=0bp_to_ENSMUST00000123225_5end | |||
|cluster_id=chr1:65003305..65003356,- | |||
|description=CAGE_peak_1_at_Plekhm3_5end | |||
|id=chr1:65003305..65003356,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!3.53e-11!71;UBERON:0003075!3.53e-11!71;UBERON:0007284!3.53e-11!71;UBERON:0000033!2.18e-10!63;UBERON:0004121!2.59e-10!102;UBERON:0000924!2.59e-10!102;UBERON:0006601!2.59e-10!102;UBERON:0003056!2.46e-08!49;UBERON:0000955!3.91e-08!50;UBERON:0006238!3.91e-08!50;UBERON:0000153!8.03e-08!94;UBERON:0007811!9.12e-08!86;UBERON:0002616!1.27e-07!49;UBERON:0000475!4.22e-07!200;UBERON:0000062!6.62e-07!269;UBERON:0002021!8.90e-07!10;UBERON:0000411!8.90e-07!10;UBERON:0001950!8.90e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010371,2.43e-10,73;UBERON:0010314,6.59e-10,92;UBERON:0002346,1.25e-09,64;UBERON:0003075,1.25e-09,64;UBERON:0007284,1.25e-09,64;UBERON:0004121,8.29e-09,95;UBERON:0000924,8.29e-09,95;UBERON:0006601,8.29e-09,95;UBERON:0003056,2.46e-08,49;UBERON:0000073,2.30e-07,54;UBERON:0000955,7.39e-07,47;UBERON:0006238,7.39e-07,47;UBERON:0002021,8.90e-07,10;UBERON:0000411,8.90e-07,10;UBERON:0001950,8.90e-07,10 | |||
|phase1_expression=4.96461426024861,9.42233600626275,9.55498402718026,7.56160528267075,8.5152274090879,2.51818907867835,3.03696432774183,4.39019299701359,1.97104211012333,0.70219357896598,0.856089841127525,0.478632953972018,6.50562773738582,7.16847299835779,4.33042690360362,4.25198061518635,2.79824751251259,12.3030244489713,16.0423887318714,15.2780274647291,12.5864069423583,0.198581902401771,0,3.99981056983517,4.12936705920906,8.6134794617253,2.58457197695445,4.30942465371778,5.32065574477847,3.2763916868791,1.99557459589774,2.54012269383853,1.84519436275371,0,3.17736781726402,0.498703936075477,0.816677425049476,0.837063261473815,2.3440060335714,2.61761871986899,1.17646297606203,1.36609096991689,0.485510353031154,14.1004436132647,15.2065396829272,10.6457116253775,1.56478268869608,2.61630187656536,3.07560655828261,7.19390626574849,2.79972843250725,5.75010257459886,8.22134769682908,2.17608642603403,6.38578218370682,5.65970759279083,7.16333599846892,4.12537673821954,4.45096213891115,5.81890077199236,5.07065122804943,1.69422266034566,2.66788438833342,6.29929802096979,7.9109309005358,4.2628806896766,2.39680088414724,1.15265491596466,5.39185984004084,5.40023753326763,5.25812403378455,5.71301968807607,5.74258206474195,6.36952155917761,6.13411014516713,1.83843757322004,17.6185409599022,21.068410784056,22.733766921924,7.12185953743047,6.95306091378313,9.89735404057844,17.588528937087,19.1339287410771,20.933359945423,7.07108605136802,9.39653093274079,8.20157561631323,4.39211921332468,8.69072941228034,10.7249860819621,0.860423876981386,1.3599426674155,1.07940638327563,1.94932925234301,2.24013443548668,5.33688796500657,7.49893419343454,2.33807404142582,2.12003744706204,6.4787973097273,7.69958864485907,7.64415719119937,7.11066703153331,4.76280290224671,6.08063677140237,5.56076889516262,5.02409070763864,20.1971549244794,16.1801931580659,6.59244241711316,8.52503339273995,8.76338889573022,11.9070886036572,17.2855399489486,8.54532821041793,5.6854842578906,10.2665543413137,7.07688441559899,6.63244084784378,7.95029466457417,5.81850303762267,3.72783522436244,30.4492028892009,33.7209197969663,7.40825460104915,5.15205035375457,5.99902730993408,5.84523044536098,26.9623150928681,21.5025283324754,6.28271760564322,28.6810128317256,21.9915293304084,22.4411088124325,21.2536054618763,7.84163101647435,11.1966273549084,6.57079171927554,19.5710925974421,7.28674480591141,7.12696523743766,8.46292010085141,15.8240058727501,19.7305847538851,25.1102891758306,23.0506242416933,32.0792179716379,6.03590380211958,10.0226222488944,7.38994721488585,4.82230611340665,5.83899223373756,6.268538997399,8.43706759272568,4.57778813682534,1.40442637462647,2.05878325691772,1.70498099637356,5.59239585845855,6.0976775595085,7.56260658136262,6.15536312521547,7.47704080640135,4.78228049950873,6.97601834251224,4.82892122519315,8.52386999280337,6.91151369636618,8.86504306027114,9.97146357414026,8.04099930839328,8.34290438105992,9.12603647570528,21.449574753541,6.79170441703277,33.0418782983798,7.40461586657924,4.26576501070468,7.89604684325491,5.15469845288373,4.63872106633688,3.33567065767305,3.23383564391351,6.16887780007865,3.45867804920423,5.7807098024062,5.17286827306992,4.09424582950152,2.69645822596266,7.78096979548899,9.35963984295526,3.22435431620239,6.740662243974,6.76246414038483,8.14605311381257,7.37019451236978,7.5746685481544,10.3707920883782,6.9376769550413,8.47793130343424,8.02081565491703,2.96452627087149,4.83850806576673,4.71741588271687,4.27238013531222,2.23146133527353,5.06472035480075,3.05551022137704,2.5892652370573,5.5125977103512,2.47105271869273,4.31304619582064,4.83783231969054,2.49630138491648,5.55673531483646,3.22915344339442,3.85954817090694,16.4430339248278,5.30575952957357,6.02970412835496,8.31750920298422,9.38760993154008,10.0503754465089,9.04565835366852,10.1469496886055,12.2955412402829,15.5025282754142,11.9591076493115,17.8611013040154,14.1601685130034,19.238324791341,1.50791283939272,16.86107619838,6.88469982226651,4.96686143348518,28.0963532478636,28.3652281553132,3.44263385291018,8.83648245215305,6.31016438832513,9.37052986311932,12.0637102730367,5.73525115086125,6.90675889655422,5.94460714656548,8.50102473517278,6.72188473196017,9.88219444866309,33.0960955914461,11.071326646245,3.73937767701236,8.47012188638596,12.0428189769951,7.96470830039777,2.18502572539483,3.32555912661226,3.20628635585027,3.54362271456927,6.45613810682248,8.26970538138308,5.08947221268508,7.84294232446387,6.32073515871632,13.7044191147498,9.28219889233682,24.1712120085189,6.66226047915848,2.58717367565509,4.92975180572662,7.27094957933322,7.66985915688903,8.22745103010605,7.30715877875038,9.1521966144847,12.0744280392378,15.6575162619023,12.5313552235525,15.0161916827192,13.932285658404,11.8178620563105,13.1312719796049,6.99554007911642,22.8073121472927,5.80960994712699,5.57244543500701,6.85219751267933,6.96963290917357,6.97140561377228,6.17701067657611,6.62915876976036,7.41742697315387,7.73919853304773,2.86401185404534,4.9032079005076,4.87966721104437,4.96824567780286,6.27264888043406,7.42432716737004,7.95699643670442,9.33984049696296,7.59092231753686,7.64728342421578,5.59205381778233,4.50954350947352,8.82147621659475,6.45288112782681,8.16694991045,7.23295011475294,12.3337971608268,10.0927225235348,9.89553324814021,15.0997455973024,13.2871266454303,12.3852902690882,9.16432249821717,6.08175645870493,8.42229848751584,7.01572444080093,5.72885426135941,8.34461690081313,8.41368146639782,5.90758108698309,7.26958439626663,7.23964663222498,6.65452821903147,6.91950953252242,6.44619338990207,10.2851673919781,11.5632495643758,2.66383144048878,4.12683740403588,4.02923079273788,12.7505132061246,9.19644129710792,8.05867146775966,14.3626813982974,8.02515366456581,22.0253218620656,17.0320337507655,12.0308057822273,18.7319968754619,26.0331357512844,21.9064230243013,19.5756525067224,18.9134905354173,26.2822597210839,28.4768171463501,4.25528125095124,5.58634822761443,5.46347538413229,4.86213434136588,3.98265008993166,2.94149613520023,6.88964856185007,4.94484137373346,6.09746498224449,4.29585259998456,5.32306529769503,7.35642731405697,7.30403758265083,7.93911889820379,8.61532034334199,8.09699275181225,8.11190281613988,6.94473193669338,6.1812885120496,7.35994600671987,5.14303878578123,6.03417740941747,7.15308569841963,6.24989591519013,7.81107857447244,7.36147088657586,4.93905526756486,5.5244639401947,8.28405094459757,5.05028044491965,6.28765596058123,7.97886307242064,4.50154147486658,6.50734732981057,6.94463799532109,5.49583271463481,5.14649538579898,10.9584237564632,6.69509162240952,8.16188250742207,5.79669589051054 | |||
|short_description=p1@Plekhm3 | |||
}} |
Revision as of 21:10, 5 August 2015
Short description: | p1@Plekhm3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Plekhm3_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000123225_5end |
EntrezGene: | 241075 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ecto-epithelium | 2.43e-10 | 73 |
structure with developmental contribution from neural crest | 6.59e-10 | 92 |
neurectoderm | 1.25e-09 | 64 |
neural plate | 1.25e-09 | 64 |
presumptive neural plate | 1.25e-09 | 64 |
ectoderm-derived structure | 8.29e-09 | 95 |
ectoderm | 8.29e-09 | 95 |
presumptive ectoderm | 8.29e-09 | 95 |
pre-chordal neural plate | 2.46e-08 | 49 |
regional part of nervous system | 2.30e-07 | 54 |
brain | 7.39e-07 | 47 |
future brain | 7.39e-07 | 47 |
occipital lobe | 8.90e-07 | 10 |
visual cortex | 8.90e-07 | 10 |
neocortex | 8.90e-07 | 10 |