FFCP PHASE1:Mm9::chr8:108489938..108490020,-: Difference between revisions
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{{FFCP|EntrezGene=20498|HGNC=|MCL_coexpression_id=564|UniProt=F8WIJ0,Q9JIS8,Q3TWZ6,Q3UDQ8|association_with_transcript=0bp_to_ENSMUST00000034370,ENSMUST00000116429,ENSMUST00000143381,NM_001253804,NM_009195,NR_045594,uc009ner.1,uc009nes.1,uc012gjr.1_5end|description=CAGE_peak_1_at_Slc12a4_5end|id=chr8:108489938..108490020,-|ontology_enrichment_celltype=CL:0000333!4.40e-08!10;CL:0000095!4.40e-08!10;CL:0000243!4.40e-08!10;CL:0000123!4.40e-08!10;CL:0000125!4.40e-08!10;CL:0000030!4.40e-08!10;CL:0000339!4.40e-08!10;CL:0002453!7.47e-07!8|ontology_enrichment_celltype_v019_2=CL:0000333,4.38e-08,10;CL:0000095,4.38e-08,10;CL:0000243,4.38e-08,10;CL:0000123,4.38e-08,10;CL:0000125,4.38e-08,10;CL:0000030,4.38e-08,10;CL:0000339,4.38e-08,10;CL:0002453,7.44e-07,8|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004535!2.70e-10!23;UBERON:0001009!2.70e-10!23;UBERON:0004872!1.06e-09!33;UBERON:0007100!3.63e-08!18;UBERON:0000948!3.63e-08!18;UBERON:0005498!3.63e-08!18;UBERON:0004140!3.63e-08!18;UBERON:0009881!3.63e-08!18;UBERON:0004141!3.63e-08!18;UBERON:0003084!3.63e-08!18;UBERON:0007005!3.63e-08!18;UBERON:0004139!3.63e-08!18;UBERON:0004291!3.63e-08!18|ontology_enrichment_uberon_v019_2=UBERON:0004535,2.68e-10,23;UBERON:0001009,2.68e-10,23;UBERON:0004872,1.05e-09,33;UBERON:0007100,3.61e-08,18;UBERON:0000948,3.61e-08,18;UBERON:0005498,3.61e-08,18;UBERON:0004140,3.61e-08,18;UBERON:0009881,3.61e-08,18;UBERON:0004141,3.61e-08,18;UBERON:0003084,3.61e-08,18;UBERON:0007005,3.61e-08,18;UBERON:0004139,3.61e-08,18;UBERON:0004291,3.61e-08,18;UBERON:0000926,5.04e-07,120;UBERON:0004120,5.04e-07,120;UBERON:0006603,5.04e-07,120|phase1_expression=10.890121603126,0,0.454999239389536,0,0,0.33575854382378,0.233612640595526,4.13194635013044,7.32101355188667,9.59664557920173,2.22583358693156,3.5099749957948,1.19840510951844,2.53519167015092,7.99463428357591,7.08663435864391,1.39912375625629,0.946386496074713,2.60517423850904,1.69755860719212,8.67441559540912,1.58865521921416,0.783599367416806,0.47997726838022,0,0,0.430761996159075,0,0,0.252030129759931,0.665191531965914,21.5910428976275,20.9122027778754,0,0,0.166234645358492,0,0,0,1.0470474879476,0,0,0,20.2693876940679,18.2478476195126,19.0888622248149,44.5963066278382,62.5732198811882,52.7246838562732,59.8844089148793,35.8365239360928,40.250718022192,2.01339127269284,3.62681071005672,4.7053131879945,40.9042503297156,20.3438742356517,43.3164557513052,1.21389876515759,0.528990979272033,1.26766280701236,45.7440118293328,25.789549087223,29.6966906702862,21.7550599764734,29.8401648277362,44.9400165777607,54.5589993556607,2.07379224616955,2.97013064329719,1.68259969081106,9.71213346972932,13.9147180799517,1.22490799214954,2.97120960156533,0.919218786610021,5.50579404996943,7.02280359468532,5.52983519722476,1.31886287730194,1.82975287204819,1.56274011167028,6.97957497503452,5.6276261003168,7.48711414106369,5.89257170947335,6.69146899755784,3.54158947068071,39.6047991132553,25.9966166767342,21.7398366526258,12.0459342777394,9.51959867190851,5.93673510801599,3.24888208723835,5.82434953226536,7.8648875273781,19.7699174190547,17.4056623083922,15.9002808529653,11.1266301623578,19.2489716121477,25.4805239706646,35.5533351576666,8.44315059943735,10.6411143499541,10.6160133453104,5.36664234679582,4.91981978929626,18.1099409659086,11.1030609130327,9.43842982767638,12.2226213545711,10.399862198131,11.6412820064348,12.9436589069566,10.6293836125781,11.5679485535929,10.6153266233985,16.3384518446883,12.367125033782,12.6067565815158,3.72783522436244,5.5628351432194,5.86450779077674,1.78819938646014,4.43315960671905,4.79922184794726,5.71816021828791,3.44518470631092,3.66000482254901,2.76439574648302,3.65031072403781,3.3243009452943,3.32460871295296,5.19172041816825,18.7384429484582,10.2013715900276,2.52722758433675,4.20883711772948,6.76626303406059,6.20735681970377,7.20248519221397,10.8507468841715,7.41597840749474,6.66191345481219,7.96464658757695,8.01980449290949,5.82033580918674,10.9681526497335,16.7153567955751,12.7133524807993,14.4584569597311,19.1538691587192,17.0799173218593,7.36426787228425,3.51106593656617,3.60287069960601,5.68326998791185,15.3273071676271,10.3191466391682,11.523971933505,16.0986420197943,11.8058539048442,9.10175966035532,17.672579801031,15.0233104783787,16.2303825890366,20.2408615393581,19.8642631535705,22.5371290537479,25.0001978497318,19.1008600303214,18.788898626452,4.41608891984667,3.19004298375782,0.330418782983798,1.32225283331772,6.82522401712749,8.59275685883622,8.63411990858025,6.25218926332362,5.78182913996663,5.1360919050391,5.21981967698963,4.44687177754829,5.02670417600539,3.78017296878187,7.60359939764569,6.29173586057955,2.80979464837102,2.98711909881551,6.2590407314517,8.79713547094912,7.88954149711563,7.53509913027663,6.20647958936402,8.41629838683823,11.9517055164846,8.56138858281692,9.26292494264111,8.02081565491703,5.92905254174298,5.83957870006329,6.6830058338489,7.64531182108503,5.47722327748958,6.99413763282009,4.837891183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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:20498 | |||
|HGNC= | |||
|MCL_coexpression_id=564 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:F8WIJ0,uniprot:Q9JIS8,uniprot:Q3TWZ6,uniprot:Q3UDQ8 | |||
|association_with_transcript=0bp_to_ENSMUST00000034370,ENSMUST00000116429,ENSMUST00000143381,NM_001253804,NM_009195,NR_045594,uc009ner.1,uc009nes.1,uc012gjr.1_5end | |||
|cluster_id=chr8:108489938..108490020,- | |||
|description=CAGE_peak_1_at_Slc12a4_5end | |||
|id=chr8:108489938..108490020,- | |||
|ontology_enrichment_celltype=CL:0000333!4.40e-08!10;CL:0000095!4.40e-08!10;CL:0000243!4.40e-08!10;CL:0000123!4.40e-08!10;CL:0000125!4.40e-08!10;CL:0000030!4.40e-08!10;CL:0000339!4.40e-08!10;CL:0002453!7.47e-07!8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000333,4.38e-08,10;CL:0000095,4.38e-08,10;CL:0000243,4.38e-08,10;CL:0000123,4.38e-08,10;CL:0000125,4.38e-08,10;CL:0000030,4.38e-08,10;CL:0000339,4.38e-08,10;CL:0002453,7.44e-07,8 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004535!2.70e-10!23;UBERON:0001009!2.70e-10!23;UBERON:0004872!1.06e-09!33;UBERON:0007100!3.63e-08!18;UBERON:0000948!3.63e-08!18;UBERON:0005498!3.63e-08!18;UBERON:0004140!3.63e-08!18;UBERON:0009881!3.63e-08!18;UBERON:0004141!3.63e-08!18;UBERON:0003084!3.63e-08!18;UBERON:0007005!3.63e-08!18;UBERON:0004139!3.63e-08!18;UBERON:0004291!3.63e-08!18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004535,2.68e-10,23;UBERON:0001009,2.68e-10,23;UBERON:0004872,1.05e-09,33;UBERON:0007100,3.61e-08,18;UBERON:0000948,3.61e-08,18;UBERON:0005498,3.61e-08,18;UBERON:0004140,3.61e-08,18;UBERON:0009881,3.61e-08,18;UBERON:0004141,3.61e-08,18;UBERON:0003084,3.61e-08,18;UBERON:0007005,3.61e-08,18;UBERON:0004139,3.61e-08,18;UBERON:0004291,3.61e-08,18;UBERON:0000926,5.04e-07,120;UBERON:0004120,5.04e-07,120;UBERON:0006603,5.04e-07,120 | |||
|phase1_expression=10.890121603126,0,0.454999239389536,0,0,0.33575854382378,0.233612640595526,4.13194635013044,7.32101355188667,9.59664557920173,2.22583358693156,3.5099749957948,1.19840510951844,2.53519167015092,7.99463428357591,7.08663435864391,1.39912375625629,0.946386496074713,2.60517423850904,1.69755860719212,8.67441559540912,1.58865521921416,0.783599367416806,0.47997726838022,0,0,0.430761996159075,0,0,0.252030129759931,0.665191531965914,21.5910428976275,20.9122027778754,0,0,0.166234645358492,0,0,0,1.0470474879476,0,0,0,20.2693876940679,18.2478476195126,19.0888622248149,44.5963066278382,62.5732198811882,52.7246838562732,59.8844089148793,35.8365239360928,40.250718022192,2.01339127269284,3.62681071005672,4.7053131879945,40.9042503297156,20.3438742356517,43.3164557513052,1.21389876515759,0.528990979272033,1.26766280701236,45.7440118293328,25.789549087223,29.6966906702862,21.7550599764734,29.8401648277362,44.9400165777607,54.5589993556607,2.07379224616955,2.97013064329719,1.68259969081106,9.71213346972932,13.9147180799517,1.22490799214954,2.97120960156533,0.919218786610021,5.50579404996943,7.02280359468532,5.52983519722476,1.31886287730194,1.82975287204819,1.56274011167028,6.97957497503452,5.6276261003168,7.48711414106369,5.89257170947335,6.69146899755784,3.54158947068071,39.6047991132553,25.9966166767342,21.7398366526258,12.0459342777394,9.51959867190851,5.93673510801599,3.24888208723835,5.82434953226536,7.8648875273781,19.7699174190547,17.4056623083922,15.9002808529653,11.1266301623578,19.2489716121477,25.4805239706646,35.5533351576666,8.44315059943735,10.6411143499541,10.6160133453104,5.36664234679582,4.91981978929626,18.1099409659086,11.1030609130327,9.43842982767638,12.2226213545711,10.399862198131,11.6412820064348,12.9436589069566,10.6293836125781,11.5679485535929,10.6153266233985,16.3384518446883,12.367125033782,12.6067565815158,3.72783522436244,5.5628351432194,5.86450779077674,1.78819938646014,4.43315960671905,4.79922184794726,5.71816021828791,3.44518470631092,3.66000482254901,2.76439574648302,3.65031072403781,3.3243009452943,3.32460871295296,5.19172041816825,18.7384429484582,10.2013715900276,2.52722758433675,4.20883711772948,6.76626303406059,6.20735681970377,7.20248519221397,10.8507468841715,7.41597840749474,6.66191345481219,7.96464658757695,8.01980449290949,5.82033580918674,10.9681526497335,16.7153567955751,12.7133524807993,14.4584569597311,19.1538691587192,17.0799173218593,7.36426787228425,3.51106593656617,3.60287069960601,5.68326998791185,15.3273071676271,10.3191466391682,11.523971933505,16.0986420197943,11.8058539048442,9.10175966035532,17.672579801031,15.0233104783787,16.2303825890366,20.2408615393581,19.8642631535705,22.5371290537479,25.0001978497318,19.1008600303214,18.788898626452,4.41608891984667,3.19004298375782,0.330418782983798,1.32225283331772,6.82522401712749,8.59275685883622,8.63411990858025,6.25218926332362,5.78182913996663,5.1360919050391,5.21981967698963,4.44687177754829,5.02670417600539,3.78017296878187,7.60359939764569,6.29173586057955,2.80979464837102,2.98711909881551,6.2590407314517,8.79713547094912,7.88954149711563,7.53509913027663,6.20647958936402,8.41629838683823,11.9517055164846,8.56138858281692,9.26292494264111,8.02081565491703,5.92905254174298,5.83957870006329,6.6830058338489,7.64531182108503,5.47722327748958,6.99413763282009,4.83789118384698,6.61701116136864,5.0261920300261,6.04035109013779,1.43768206527355,1.86070473834252,4.99260276983297,5.05157755894223,3.94674309748207,5.78932225636041,17.9210594461607,7.76914788258988,9.28900365719548,7.97801903143384,8.91822943496308,11.0554129911598,10.4739201989846,19.7084984336377,18.6009470045305,17.9386398615508,24.874943910568,18.5165545628784,22.9671025881641,19.0936757327595,9.04747703635634,7.07077388964322,2.45882136509518,4.41498794087572,4.97706828962155,5.50894926983355,5.24591825205361,10.0988370881749,10.4117712407365,10.5418460960092,8.40151251157916,15.0550342710108,13.3679204449436,9.34152551603147,14.5731852602962,18.1198631905013,10.6727700045561,7.71171159412337,11.4971469018698,12.8207234640424,16.4515828947112,16.8269525431986,1.32745138339963,4.37005145078967,6.65111825322452,5.65815239267694,6.20133975049623,8.9156192903739,9.56184684722418,8.72480950746013,6.41695281092498,6.32073515871632,2.10837217149998,6.18813259489121,8.5109901438447,6.30213829109586,8.66703181344455,8.3591443662321,9.75371285032505,9.45354733290974,9.05019613311665,13.0919928119278,13.6109590676952,16.0992373856503,2.64634077665954,19.7863503529776,15.8235138161987,16.3448026555302,14.8021706563889,10.5050175836839,5.82961673259701,7.6024373824309,7.34744787430767,9.08102219038179,7.03739204004904,8.2882121082064,7.79157098009843,6.40578884978263,4.24946074984638,2.79902904647316,4.14599921413271,3.81868247206045,9.01557581706236,11.9958485604841,8.3164112432787,10.245326504709,6.33251434863915,9.57536859332227,11.819444168723,8.11443420150492,3.6292192521702,3.10669656543463,0.56369293868419,8.37292657846281,7.77654905148359,13.41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| |||
|short_description=p1@Slc12a4 | |||
}} |
Revision as of 20:30, 5 August 2015
Short description: | p1@Slc12a4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Slc12a4_5end |
Coexpression cluster: | MCL_coexpression_mm9:564 |
Association with transcript: | 0bp_to_ENSMUST00000034370, ENSMUST00000116429, ENSMUST00000143381, NM_001253804, NM_009195, NR_045594, uc009ner.1, uc009nes.1, uc012gjr.1_5end |
EntrezGene: | 20498 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
migratory neural crest cell | 4.38e-08 | 10 |
neuron associated cell | 4.38e-08 | 10 |
glial cell (sensu Vertebrata) | 4.38e-08 | 10 |
neuron associated cell (sensu Vertebrata) | 4.38e-08 | 10 |
glial cell | 4.38e-08 | 10 |
glioblast | 4.38e-08 | 10 |
glioblast (sensu Vertebrata) | 4.38e-08 | 10 |
oligodendrocyte precursor cell | 7.44e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
cardiovascular system | 2.68e-10 | 23 |
circulatory system | 2.68e-10 | 23 |
splanchnic layer of lateral plate mesoderm | 1.05e-09 | 33 |
primary circulatory organ | 3.61e-08 | 18 |
heart | 3.61e-08 | 18 |
primitive heart tube | 3.61e-08 | 18 |
primary heart field | 3.61e-08 | 18 |
anterior lateral plate mesoderm | 3.61e-08 | 18 |
heart tube | 3.61e-08 | 18 |
heart primordium | 3.61e-08 | 18 |
cardiac mesoderm | 3.61e-08 | 18 |
cardiogenic plate | 3.61e-08 | 18 |
heart rudiment | 3.61e-08 | 18 |
mesoderm | 5.04e-07 | 120 |
mesoderm-derived structure | 5.04e-07 | 120 |
presumptive mesoderm | 5.04e-07 | 120 |