FFCP PHASE1:Mm9::chr11:31900452..31900470,+: Difference between revisions
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{{FFCP|EntrezGene=18197|HGNC=|MCL_coexpression_id=22|UniProt=P47759,Q5SS04,Q5SS02,Q5SS03|association_with_transcript=0bp_to_ENSMUST00000020537,ENSMUST00000109409,NM_008741,uc007iiv.1,uc007iiw.1_5end|description=CAGE_peak_1_at_Nsg2_5end|id=chr11:31900452..31900470,+|ontology_enrichment_celltype=CL:0000540!3.13e-15!33;CL:0000047!3.13e-15!33;CL:0000031!3.13e-15!33;CL:0000404!3.13e-15!33;CL:0000117!2.41e-14!23;CL:0000337!2.41e-14!23;CL:0002319!3.33e-14!43;CL:0000221!4.58e-14!44;CL:0000133!4.58e-14!44;CL:0000393!2.73e-09!39;CL:0000211!2.73e-09!39;CL:0000055!1.40e-08!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.53e-15,33;CL:0000047,1.53e-15,33;CL:0000031,1.53e-15,33;CL:0000404,1.53e-15,33;CL:0000117,1.23e-14,23;CL:0000337,1.23e-14,23;CL:0002319,1.72e-14,43;CL:0000221,2.38e-14,44;CL:0000133,2.38e-14,44;CL:0000393,5.42e-10,39;CL:0000211,5.42e-10,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.63e-29!73;UBERON:0005743!2.63e-29!73;UBERON:0000073!2.16e-28!75;UBERON:0001016!2.16e-28!75;UBERON:0002346!2.12e-25!71;UBERON:0003075!2.12e-25!71;UBERON:0007284!2.12e-25!71;UBERON:0004121!2.33e-24!102;UBERON:0000924!2.33e-24!102;UBERON:0006601!2.33e-24!102;UBERON:0007811!7.66e-24!86;UBERON:0000153!3.58e-23!94;UBERON:0001049!1.03e-22!52;UBERON:0005068!1.03e-22!52;UBERON:0006241!1.03e-22!52;UBERON:0007135!1.03e-22!52;UBERON:0000955!1.01e-21!50;UBERON:0006238!1.01e-21!50;UBERON:0000033!3.29e-21!63;UBERON:0002616!4.59e-21!49;UBERON:0003056!6.96e-20!49;UBERON:0002020!1.19e-19!34;UBERON:0003080!4.13e-19!40;UBERON:0002780!1.51e-18!39;UBERON:0001890!1.51e-18!39;UBERON:0006240!1.51e-18!39;UBERON:0002791!3.94e-17!29;UBERON:0003528!3.94e-17!29;UBERON:0001893!3.94e-17!29;UBERON:0000956!2.91e-12!21;UBERON:0001869!2.91e-12!21;UBERON:0000203!2.91e-12!21;UBERON:0002619!1.12e-09!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.10e-30,73;UBERON:0001016,5.26e-29,75;UBERON:0002346,2.04e-25,64;UBERON:0003075,2.04e-25,64;UBERON:0007284,2.04e-25,64;UBERON:0000073,2.78e-24,54;UBERON:0001049,3.40e-23,52;UBERON:0005068,3.40e-23,52;UBERON:0006241,3.40e-23,52;UBERON:0007135,3.40e-23,52;UBERON:0004121,4.74e-23,95;UBERON:0000924,4.74e-23,95;UBERON:0006601,4.74e-23,95;UBERON:0000955,1.05e-20,47;UBERON:0006238,1.05e-20,47;UBERON:0003056,2.66e-20,49;UBERON:0002020,4.61e-20,34;UBERON:0002616,4.86e-20,46;UBERON:0003080,1.64e-19,40;UBERON:0010371,2.49e-19,73;UBERON:0002780,6.19e-19,39;UBERON:0001890,6.19e-19,39;UBERON:0006240,6.19e-19,39;UBERON:0003528,1.74e-17,29;UBERON:0002791,1.74e-17,29;UBERON:0001893,1.74e-17,29;UBERON:0010314,5.67e-15,92;UBERON:0000956,1.66e-12,21;UBERON:0001869,1.66e-12,21;UBERON:0000203,1.66e-12,21;UBERON:0002619,7.31e-10,17;UBERON:0011216,8.40e-07,194|phase1_expression=4.64431656603902,0,0,0,0,0,0,1.67860320474049,27.5945895417267,3.5109678948299,5.13653904676515,0,209.378492705865,25.7015983111852,2.99798785634096,5.06188168474565,2.09868563438444,16.2463015159492,17.2764186343231,10.6097412949508,38.5246104384346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17646297606203,0,0,0,0,0,2.34717403304412,35.3200753336323,28.7788899382158,37.3305406222624,10.6389680435276,25.8754615856949,0.335565212115473,169.009379088643,138.470645246695,0,0,0,476.252948863493,612.571553997014,517.840256664548,0.338844532069132,0.889294796111139,0.449949858640699,0,0,28.4620104992484,59.553837324841,447.005918661847,631.557779515649,514.244530504129,196.813528254221,195.468658742178,586.363455841985,541.143529368963,635.180181547525,193.803950558924,196.383125975019,206.139967629879,525.962515468013,513.062705322313,509.453276404511,182.864864345905,265.061189324921,239.587652514038,230.988811011355,223.80828221619,335.332603039716,1.96888102666279,2.49386148352392,0,0,0,1.61910957491345,0,0,10.2524426696179,0,0,0,6.90132756905734,0,0,0,0,0,0,7.30776830201984,52.823328264023,27.9071221441871,27.0637109755172,40.1894431372026,20.2941637585331,35.5705431704189,27.2805800554835,11.9383261763192,0,0.86759614151947,1.76922110389975,1.61766849947409,1.54589062922275,1.45462575940567,0,42.1604347696628,38.1193006400488,1.78819938646014,0.599075622529601,0,0.127070227073065,253.74534315177,418.155550976225,647.999493846042,341.217140537439,308.648556997709,256.410446986497,309.394088670214,1.42575109390443,0.497627882440372,0,9.89076722666428,7.54698569183682,41.3823787980251,57.6198815377118,55.1579633278717,52.7282868422791,59.5728799324552,61.2809278620627,39.3229123523304,4.31135985865684,5.8622884852024,8.79755620819744,8.98702502953057,5.83899223373756,4.87553033131033,2.26360350048738,0.796137067273973,0,0,0,0.621377317606506,0.703578179943289,1.44049649168812,0.710234206755631,0.393528463494808,1.54267112887378,0.930135779001631,1.07309360559848,2.45207218971056,1.15191894939436,1.47750717671186,1.13496333364198,3.94739966048397,2.19550115291051,1.74468344388483,360.857551736042,545.291540997828,0.660837565967596,1.05780226665418,5.11891801284562,4.64473343720877,9.665059599157,10.4875432804138,9.33987784148455,7.98947629672748,5.69434873853414,10.0466362381647,8.04272668160862,10.3457365461398,13.4525220112193,4.49409704327111,2.59365659849633,5.37681437786791,2.46568271239006,7.76889885746156,10.1436962105772,4.48032921259691,6.0125271021964,6.10181633045771,6.63983639804701,2.36176236767363,3.45397201251025,2.34454611451421,0,0,0.393117990226406,0.224862112384854,0.202860121388503,0,0.25462585178142,0.287696137450811,0.162135226775035,0.274561413188081,1.43768206527355,0.372140947668503,0.312037673114561,0.252578877947112,0.358794827043824,0,3.69506380333209,5.11626811780309,0.488894929326078,0.509235257325564,1.40814148973101,5.86271901046355,0.476087281772027,0.975668239288994,2.52216230569906,1.7717175171902,2.23236676120482,1.80249646187312,4.48980952851328,2.02508682014116,0,0,0.983528546038072,1.10374698521893,134.380843819782,122.017365742484,0,0,64.9946931997489,72.2311676948781,141.748595708182,13.6212214832955,22.9482634304866,24.6276581786284,45.3387985875882,87.0922456575709,75.1046778098395,340.921916723537,2.12910127812403,2.49291845134157,2.76907830901079,4.94910368917606,0,1.69946445308487,2.11626489875326,1.13163047853539,2.36241514304618,2.15204603560749,3.35956781118687,1.09060118843252,3.92147116223193,4.74055136903724,0,0,82.0459449866629,19.9867814374754,23.9313564998096,31.0788700795809,36.3547478966661,40.1329839604659,38.0108237590899,32.2732846061475,0,0.21183207086382,7.93902232997863,0,1.13025098687134,0.482503399425247,0.119372344003136,0.656563598980245,5.82961673259701,105.136146239959,7.17657699350981,1.857481811669,0.925972636848558,4.1441060541032,6.83471138605126,8.23601423543482,0.849892149969277,1.53946597556024,1.10559979043539,1.90934123603023,4.74503990371703,5.89626454667861,5.72428306355547,6.48173717644853,8.07941485860857,6.60835297285622,8.5133059397096,3.92633912976044,5.18459893167171,3.72803587852155,0,0,0,0.194451188344048,0.258319646955462,0.168956125490778,0.234714477291508,1.43224823328345,0.419437377702843,0,0,244.59260736621,7.50083296573608,20.6449023901303,52.2281708370736,128.541167489252,196.893222588233,181.134542426593,197.313208305235,244.338808874517,237.689029956944,263.761300317975,263.91594104325,231.774326511554,316.268897303326,0.453460767230423,0,0,0,5.40930863290133,0,3.47988086107804,2.78678892802786,1.00314420807073,322.473302134345,294.147826128086,288.166443260016,324.80251462957,231.557891682477,222.841199729962,257.183572588318,223.809638002438,211.617504995624,206.068604077224,21.3801936023404,102.150367590664,84.1716676367881,69.0423076473955,56.3859407469272,59.1976097209046,67.3407585238894,62.0165522289072,73.4904989965257,74.2929802585565,74.01595556795,58.6627921710697,60.492413825544,58.5189892980505,60.0775005275715,60.4892987929504,67.4446776999059,70.2189562487886,68.8183454341522,68.0059011020916,64.4594194484581,60.1642982880154,67.9543141349865,73.9813260658552,68.1351914206994,68.9609054317163,69.146773745908,62.8736610336444,60.7044388891002,73.5096375871637,65.0119899320474,61.9593194142294,78.98159133175,65.8481575040355,51.6989717429459,135.147522664429,55.9096544184526,47.4865029446739,17.2159498861959,6.83833399270498,9.97031693167812|short_description=p1@Nsg2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:18197 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P47759,uniprot:Q5SS04,uniprot:Q5SS02,uniprot:Q5SS03 | |||
|association_with_transcript=0bp_to_ENSMUST00000020537,ENSMUST00000109409,NM_008741,uc007iiv.1,uc007iiw.1_5end | |||
|cluster_id=chr11:31900452..31900470,+ | |||
|description=CAGE_peak_1_at_Nsg2_5end | |||
|id=chr11:31900452..31900470,+ | |||
|ontology_enrichment_celltype=CL:0000540!3.13e-15!33;CL:0000047!3.13e-15!33;CL:0000031!3.13e-15!33;CL:0000404!3.13e-15!33;CL:0000117!2.41e-14!23;CL:0000337!2.41e-14!23;CL:0002319!3.33e-14!43;CL:0000221!4.58e-14!44;CL:0000133!4.58e-14!44;CL:0000393!2.73e-09!39;CL:0000211!2.73e-09!39;CL:0000055!1.40e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.53e-15,33;CL:0000047,1.53e-15,33;CL:0000031,1.53e-15,33;CL:0000404,1.53e-15,33;CL:0000117,1.23e-14,23;CL:0000337,1.23e-14,23;CL:0002319,1.72e-14,43;CL:0000221,2.38e-14,44;CL:0000133,2.38e-14,44;CL:0000393,5.42e-10,39;CL:0000211,5.42e-10,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.63e-29!73;UBERON:0005743!2.63e-29!73;UBERON:0000073!2.16e-28!75;UBERON:0001016!2.16e-28!75;UBERON:0002346!2.12e-25!71;UBERON:0003075!2.12e-25!71;UBERON:0007284!2.12e-25!71;UBERON:0004121!2.33e-24!102;UBERON:0000924!2.33e-24!102;UBERON:0006601!2.33e-24!102;UBERON:0007811!7.66e-24!86;UBERON:0000153!3.58e-23!94;UBERON:0001049!1.03e-22!52;UBERON:0005068!1.03e-22!52;UBERON:0006241!1.03e-22!52;UBERON:0007135!1.03e-22!52;UBERON:0000955!1.01e-21!50;UBERON:0006238!1.01e-21!50;UBERON:0000033!3.29e-21!63;UBERON:0002616!4.59e-21!49;UBERON:0003056!6.96e-20!49;UBERON:0002020!1.19e-19!34;UBERON:0003080!4.13e-19!40;UBERON:0002780!1.51e-18!39;UBERON:0001890!1.51e-18!39;UBERON:0006240!1.51e-18!39;UBERON:0002791!3.94e-17!29;UBERON:0003528!3.94e-17!29;UBERON:0001893!3.94e-17!29;UBERON:0000956!2.91e-12!21;UBERON:0001869!2.91e-12!21;UBERON:0000203!2.91e-12!21;UBERON:0002619!1.12e-09!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.10e-30,73;UBERON:0001016,5.26e-29,75;UBERON:0002346,2.04e-25,64;UBERON:0003075,2.04e-25,64;UBERON:0007284,2.04e-25,64;UBERON:0000073,2.78e-24,54;UBERON:0001049,3.40e-23,52;UBERON:0005068,3.40e-23,52;UBERON:0006241,3.40e-23,52;UBERON:0007135,3.40e-23,52;UBERON:0004121,4.74e-23,95;UBERON:0000924,4.74e-23,95;UBERON:0006601,4.74e-23,95;UBERON:0000955,1.05e-20,47;UBERON:0006238,1.05e-20,47;UBERON:0003056,2.66e-20,49;UBERON:0002020,4.61e-20,34;UBERON:0002616,4.86e-20,46;UBERON:0003080,1.64e-19,40;UBERON:0010371,2.49e-19,73;UBERON:0002780,6.19e-19,39;UBERON:0001890,6.19e-19,39;UBERON:0006240,6.19e-19,39;UBERON:0003528,1.74e-17,29;UBERON:0002791,1.74e-17,29;UBERON:0001893,1.74e-17,29;UBERON:0010314,5.67e-15,92;UBERON:0000956,1.66e-12,21;UBERON:0001869,1.66e-12,21;UBERON:0000203,1.66e-12,21;UBERON:0002619,7.31e-10,17;UBERON:0011216,8.40e-07,194 | |||
|phase1_expression=4.64431656603902,0,0,0,0,0,0,1.67860320474049,27.5945895417267,3.5109678948299,5.13653904676515,0,209.378492705865,25.7015983111852,2.99798785634096,5.06188168474565,2.09868563438444,16.2463015159492,17.2764186343231,10.6097412949508,38.5246104384346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17646297606203,0,0,0,0,0,2.34717403304412,35.3200753336323,28.7788899382158,37.3305406222624,10.6389680435276,25.8754615856949,0.335565212115473,169.009379088643,138.470645246695,0,0,0,476.252948863493,612.571553997014,517.840256664548,0.338844532069132,0.889294796111139,0.449949858640699,0,0,28.4620104992484,59.553837324841,447.005918661847,631.557779515649,514.244530504129,196.813528254221,195.468658742178,586.363455841985,541.143529368963,635.180181547525,193.803950558924,196.383125975019,206.139967629879,525.962515468013,513.062705322313,509.453276404511,182.864864345905,265.061189324921,239.587652514038,230.988811011355,223.80828221619,335.332603039716,1.96888102666279,2.49386148352392,0,0,0,1.61910957491345,0,0,10.2524426696179,0,0,0,6.90132756905734,0,0,0,0,0,0,7.30776830201984,52.823328264023,27.9071221441871,27.0637109755172,40.1894431372026,20.2941637585331,35.5705431704189,27.2805800554835,11.9383261763192,0,0.86759614151947,1.76922110389975,1.61766849947409,1.54589062922275,1.45462575940567,0,42.1604347696628,38.1193006400488,1.78819938646014,0.599075622529601,0,0.127070227073065,253.74534315177,418.155550976225,647.999493846042,341.217140537439,308.648556997709,256.410446986497,309.394088670214,1.42575109390443,0.497627882440372,0,9.89076722666428,7.54698569183682,41.3823787980251,57.6198815377118,55.1579633278717,52.7282868422791,59.5728799324552,61.2809278620627,39.3229123523304,4.31135985865684,5.8622884852024,8.79755620819744,8.98702502953057,5.83899223373756,4.87553033131033,2.26360350048738,0.796137067273973,0,0,0,0.621377317606506,0.703578179943289,1.44049649168812,0.710234206755631,0.393528463494808,1.54267112887378,0.930135779001631,1.07309360559848,2.45207218971056,1.15191894939436,1.47750717671186,1.13496333364198,3.94739966048397,2.19550115291051,1.74468344388483,360.857551736042,545.291540997828,0.660837565967596,1.05780226665418,5.11891801284562,4.64473343720877,9.665059599157,10.4875432804138,9.33987784148455,7.98947629672748,5.69434873853414,10.0466362381647,8.04272668160862,10.3457365461398,13.4525220112193,4.49409704327111,2.59365659849633,5.37681437786791,2.46568271239006,7.76889885746156,10.1436962105772,4.48032921259691,6.0125271021964,6.10181633045771,6.63983639804701,2.36176236767363,3.45397201251025,2.34454611451421,0,0,0.393117990226406,0.224862112384854,0.202860121388503,0,0.25462585178142,0.287696137450811,0.162135226775035,0.274561413188081,1.43768206527355,0.372140947668503,0.312037673114561,0.252578877947112,0.358794827043824,0,3.69506380333209,5.11626811780309,0.488894929326078,0.509235257325564,1.40814148973101,5.86271901046355,0.476087281772027,0.975668239288994,2.52216230569906,1.7717175171902,2.23236676120482,1.80249646187312,4.48980952851328,2.02508682014116,0,0,0.983528546038072,1.10374698521893,134.380843819782,122.017365742484,0,0,64.9946931997489,72.2311676948781,141.748595708182,13.6212214832955,22.9482634304866,24.6276581786284,45.3387985875882,87.0922456575709,75.1046778098395,340.921916723537,2.12910127812403,2.49291845134157,2.76907830901079,4.94910368917606,0,1.69946445308487,2.11626489875326,1.13163047853539,2.36241514304618,2.15204603560749,3.35956781118687,1.09060118843252,3.92147116223193,4.74055136903724,0,0,82.0459449866629,19.9867814374754,23.9313564998096,31.0788700795809,36.3547478966661,40.1329839604659,38.0108237590899,32.2732846061475,0,0.21183207086382,7.93902232997863,0,1.13025098687134,0.482503399425247,0.119372344003136,0.656563598980245,5.82961673259701,105.136146239959,7.17657699350981,1.857481811669,0.925972636848558,4.1441060541032,6.83471138605126,8.23601423543482,0.849892149969277,1.53946597556024,1.10559979043539,1.90934123603023,4.74503990371703,5.89626454667861,5.72428306355547,6.48173717644853,8.07941485860857,6.60835297285622,8.5133059397096,3.92633912976044,5.18459893167171,3.72803587852155,0,0,0,0.194451188344048,0.258319646955462,0.168956125490778,0.234714477291508,1.43224823328345,0.419437377702843,0,0,244.59260736621,7.50083296573608,20.6449023901303,52.2281708370736,128.541167489252,196.893222588233,181.134542426593,197.313208305235,244.338808874517,237.689029956944,263.761300317975,263.91594104325,231.774326511554,316.268897303326,0.453460767230423,0,0,0,5.40930863290133,0,3.47988086107804,2.78678892802786,1.00314420807073,322.473302134345,294.147826128086,288.166443260016,324.80251462957,231.557891682477,222.841199729962,257.183572588318,223.809638002438,211.617504995624,206.068604077224,21.3801936023404,102.150367590664,84.1716676367881,69.0423076473955,56.3859407469272,59.1976097209046,67.3407585238894,62.0165522289072,73.4904989965257,74.2929802585565,74.01595556795,58.6627921710697,60.492413825544,58.518989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| |||
|short_description=p1@Nsg2 | |||
}} |
Revision as of 19:27, 5 August 2015
Short description: | p1@Nsg2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Nsg2_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000020537, ENSMUST00000109409, NM_008741, uc007iiv.1, uc007iiw.1_5end |
EntrezGene: | 18197 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.53e-15 | 33 |
neuronal stem cell | 1.53e-15 | 33 |
neuroblast | 1.53e-15 | 33 |
electrically signaling cell | 1.53e-15 | 33 |
CNS neuron (sensu Vertebrata) | 1.23e-14 | 23 |
neuroblast (sensu Vertebrata) | 1.23e-14 | 23 |
neural cell | 1.72e-14 | 43 |
ectodermal cell | 2.38e-14 | 44 |
neurectodermal cell | 2.38e-14 | 44 |
electrically responsive cell | 5.42e-10 | 39 |
electrically active cell | 5.42e-10 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 6.10e-30 | 73 |
nervous system | 5.26e-29 | 75 |
neurectoderm | 2.04e-25 | 64 |
neural plate | 2.04e-25 | 64 |
presumptive neural plate | 2.04e-25 | 64 |
regional part of nervous system | 2.78e-24 | 54 |
neural tube | 3.40e-23 | 52 |
neural rod | 3.40e-23 | 52 |
future spinal cord | 3.40e-23 | 52 |
neural keel | 3.40e-23 | 52 |
ectoderm-derived structure | 4.74e-23 | 95 |
ectoderm | 4.74e-23 | 95 |
presumptive ectoderm | 4.74e-23 | 95 |
brain | 1.05e-20 | 47 |
future brain | 1.05e-20 | 47 |
pre-chordal neural plate | 2.66e-20 | 49 |
gray matter | 4.61e-20 | 34 |
regional part of brain | 4.86e-20 | 46 |
anterior neural tube | 1.64e-19 | 40 |
ecto-epithelium | 2.49e-19 | 73 |
regional part of forebrain | 6.19e-19 | 39 |
forebrain | 6.19e-19 | 39 |
future forebrain | 6.19e-19 | 39 |
brain grey matter | 1.74e-17 | 29 |
regional part of telencephalon | 1.74e-17 | 29 |
telencephalon | 1.74e-17 | 29 |
structure with developmental contribution from neural crest | 5.67e-15 | 92 |
cerebral cortex | 1.66e-12 | 21 |
cerebral hemisphere | 1.66e-12 | 21 |
pallium | 1.66e-12 | 21 |
regional part of cerebral cortex | 7.31e-10 | 17 |
organ system subdivision | 8.40e-07 | 194 |