FFCP PHASE1:Mm9::chr18:16967086..16967117,-: Difference between revisions
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{{FFCP|EntrezGene=12558|HGNC=|MCL_coexpression_id=1713|UniProt=|association_with_transcript=-115bp_to_ENSMUST00000152779_5end|description=CAGE_peak_6_at_Cdh2_5end|id=chr18:16967086..16967117,-|ontology_enrichment_celltype=CL:0000055!3.77e-13!50;CL:0002319!6.68e-13!43;CL:0000221!6.88e-13!44;CL:0000133!6.88e-13!44;CL:0000393!1.33e-11!39;CL:0000211!1.33e-11!39;CL:0000540!1.16e-10!33;CL:0000047!1.16e-10!33;CL:0000031!1.16e-10!33;CL:0000404!1.16e-10!33;CL:0000117!2.55e-07!23;CL:0000337!2.55e-07!23|ontology_enrichment_celltype_v019_2=CL:0002319,8.19e-14,43;CL:0000221,3.46e-13,44;CL:0000133,3.46e-13,44;CL:0000393,6.85e-12,39;CL:0000211,6.85e-12,39;CL:0000540,9.28e-12,33;CL:0000047,9.28e-12,33;CL:0000031,9.28e-12,33;CL:0000404,9.28e-12,33;CL:0000117,5.50e-08,23;CL:0000337,5.50e-08,23;CL:0002321,2.41e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000025!9.40e-15!114;UBERON:0007100!3.16e-13!18;UBERON:0000948!3.16e-13!18;UBERON:0005498!3.16e-13!18;UBERON:0004140!3.16e-13!18;UBERON:0009881!3.16e-13!18;UBERON:0004141!3.16e-13!18;UBERON:0003084!3.16e-13!18;UBERON:0007005!3.16e-13!18;UBERON:0004139!3.16e-13!18;UBERON:0004291!3.16e-13!18;UBERON:0001017!3.75e-13!73;UBERON:0005743!3.75e-13!73;UBERON:0000073!4.31e-13!75;UBERON:0001016!4.31e-13!75;UBERON:0004121!4.74e-12!102;UBERON:0000924!4.74e-12!102;UBERON:0006601!4.74e-12!102;UBERON:0004111!5.85e-12!122;UBERON:0002346!3.35e-11!71;UBERON:0003075!3.35e-11!71;UBERON:0007284!3.35e-11!71;UBERON:0004535!2.75e-10!23;UBERON:0001009!2.75e-10!23;UBERON:0003914!1.34e-09!47;UBERON:0003056!9.04e-09!49;UBERON:0000033!8.77e-08!63;UBERON:0001049!2.12e-07!52;UBERON:0005068!2.12e-07!52;UBERON:0006241!2.12e-07!52;UBERON:0007135!2.12e-07!52|ontology_enrichment_uberon_v019_2=UBERON:0010314,6.99e-22,92;UBERON:0007100,3.23e-16,18;UBERON:0000948,3.23e-16,18;UBERON:0005498,3.23e-16,18;UBERON:0004140,3.23e-16,18;UBERON:0009881,3.23e-16,18;UBERON:0004141,3.23e-16,18;UBERON:0003084,3.23e-16,18;UBERON:0007005,3.23e-16,18;UBERON:0004139,3.23e-16,18;UBERON:0004291,3.23e-16,18;UBERON:0001017,2.45e-14,73;UBERON:0001016,1.89e-13,75;UBERON:0004121,6.94e-13,95;UBERON:0000924,6.94e-13,95;UBERON:0006601,6.94e-13,95;UBERON:0002346,1.22e-12,64;UBERON:0003075,1.22e-12,64;UBERON:0007284,1.22e-12,64;UBERON:0000025,3.36e-12,114;UBERON:0004535,8.47e-11,23;UBERON:0001009,8.47e-11,23;UBERON:0004111,6.22e-10,122;UBERON:0003056,1.18e-09,49;UBERON:0010371,3.91e-09,73;UBERON:0003914,2.34e-08,47;UBERON:0000073,2.64e-08,54;UBERON:0001049,1.15e-07,52;UBERON:0005068,1.15e-07,52;UBERON:0006241,1.15e-07,52;UBERON:0007135,1.15e-07,52|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503587271902309,0.405507724878058,0.550640256485045,0,14.8257106338704,14.7189742432096,15.1655321277941,4.75953833526233,8.62515386189829,0,0,0,14.663787854049,6.01720223871389,7.73508138416164,7.08107613008592,5.81890077199236,5.07065122804943,1.0165335962074,0.889294796111139,0,0,0,1.19840044207362,2.30530983192933,6.0139975138917,7.56033254657468,5.25812403378455,2.28520787523043,1.54607978666129,4.77714116938321,5.75072826109418,3.67687514644008,0,2.80912143787413,2.30409799884365,5.40733779693795,4.57438218012048,2.6045668527838,0.279182999001381,0.56276261003168,0.61119299110724,3.53554302568401,2.27794689278565,4.84638559145781,0.681535739998656,0.755715601067855,0.289864488701678,0,1.3599426674155,2.69851595818909,1.94932925234301,0,0.702222100658759,0.170430322578058,0.259786004602869,0.35333957451034,0.985903938436763,0,0,0,0,0,0,0.91347103775248,0,0.445326417194474,1.04091196059682,0.608930956624282,0.691846491768175,1.3565037649736,0.940709657085638,0,0,0.144599356919912,0,2.58826959915855,1.98757366614354,4.363877278217,0,0.878342391034642,1.04723353406728,0,0,0,0,1.64769703345305,0.457500602818626,2.89005009859588,1.91206752211504,1.27857728665165,2.70124457927428,2.27137768294861,0.203678727700633,1.99051152976149,0,0.420883711772948,4.68433594665733,3.44853156650209,5.40186389416048,5.87748789559289,4.62648194229029,7.55870949680614,4.8724896771059,3.10444044886819,1.94011193639558,2.64748512234947,1.58356011747554,1.31517439456545,0.278047249225598,0.348252166522167,1.02891068203972,0.796137067273973,0,0,0,8.28503090142008,10.0846205791871,9.90341338035582,15.6251525486239,16.3314312350345,9.71882811190483,12.7893669612724,10.4626626545851,12.6106569756543,17.114224391002,13.1333971263276,12.3224590509701,9.9415991449226,14.7098577245004,10.468100663309,2.10289948564127,3.19004298375782,0,0,2.98603550749328,1.16118335930219,1.41754207454303,0.605050573870028,0.667134131534611,0,0,0.164698954724011,0.502670417600539,0,0,0,0,0,0.569003702859245,0.571242563048644,0,0.814605311381257,0.193952487167626,0.561086559122548,0.0632365371242573,0,0.156998727841375,0.123397163921801,2.96452627087149,2.00214126859313,0.982794975566015,1.12431056192427,1.01430060694251,0.964708639009667,0.50925170356284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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:12558 | |||
|HGNC= | |||
|MCL_coexpression_id=1713 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-115bp_to_ENSMUST00000152779_5end | |||
|cluster_id=chr18:16967086..16967117,- | |||
|description=CAGE_peak_6_at_Cdh2_5end | |||
|id=chr18:16967086..16967117,- | |||
|ontology_enrichment_celltype=CL:0000055!3.77e-13!50;CL:0002319!6.68e-13!43;CL:0000221!6.88e-13!44;CL:0000133!6.88e-13!44;CL:0000393!1.33e-11!39;CL:0000211!1.33e-11!39;CL:0000540!1.16e-10!33;CL:0000047!1.16e-10!33;CL:0000031!1.16e-10!33;CL:0000404!1.16e-10!33;CL:0000117!2.55e-07!23;CL:0000337!2.55e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,8.19e-14,43;CL:0000221,3.46e-13,44;CL:0000133,3.46e-13,44;CL:0000393,6.85e-12,39;CL:0000211,6.85e-12,39;CL:0000540,9.28e-12,33;CL:0000047,9.28e-12,33;CL:0000031,9.28e-12,33;CL:0000404,9.28e-12,33;CL:0000117,5.50e-08,23;CL:0000337,5.50e-08,23;CL:0002321,2.41e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000025!9.40e-15!114;UBERON:0007100!3.16e-13!18;UBERON:0000948!3.16e-13!18;UBERON:0005498!3.16e-13!18;UBERON:0004140!3.16e-13!18;UBERON:0009881!3.16e-13!18;UBERON:0004141!3.16e-13!18;UBERON:0003084!3.16e-13!18;UBERON:0007005!3.16e-13!18;UBERON:0004139!3.16e-13!18;UBERON:0004291!3.16e-13!18;UBERON:0001017!3.75e-13!73;UBERON:0005743!3.75e-13!73;UBERON:0000073!4.31e-13!75;UBERON:0001016!4.31e-13!75;UBERON:0004121!4.74e-12!102;UBERON:0000924!4.74e-12!102;UBERON:0006601!4.74e-12!102;UBERON:0004111!5.85e-12!122;UBERON:0002346!3.35e-11!71;UBERON:0003075!3.35e-11!71;UBERON:0007284!3.35e-11!71;UBERON:0004535!2.75e-10!23;UBERON:0001009!2.75e-10!23;UBERON:0003914!1.34e-09!47;UBERON:0003056!9.04e-09!49;UBERON:0000033!8.77e-08!63;UBERON:0001049!2.12e-07!52;UBERON:0005068!2.12e-07!52;UBERON:0006241!2.12e-07!52;UBERON:0007135!2.12e-07!52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,6.99e-22,92;UBERON:0007100,3.23e-16,18;UBERON:0000948,3.23e-16,18;UBERON:0005498,3.23e-16,18;UBERON:0004140,3.23e-16,18;UBERON:0009881,3.23e-16,18;UBERON:0004141,3.23e-16,18;UBERON:0003084,3.23e-16,18;UBERON:0007005,3.23e-16,18;UBERON:0004139,3.23e-16,18;UBERON:0004291,3.23e-16,18;UBERON:0001017,2.45e-14,73;UBERON:0001016,1.89e-13,75;UBERON:0004121,6.94e-13,95;UBERON:0000924,6.94e-13,95;UBERON:0006601,6.94e-13,95;UBERON:0002346,1.22e-12,64;UBERON:0003075,1.22e-12,64;UBERON:0007284,1.22e-12,64;UBERON:0000025,3.36e-12,114;UBERON:0004535,8.47e-11,23;UBERON:0001009,8.47e-11,23;UBERON:0004111,6.22e-10,122;UBERON:0003056,1.18e-09,49;UBERON:0010371,3.91e-09,73;UBERON:0003914,2.34e-08,47;UBERON:0000073,2.64e-08,54;UBERON:0001049,1.15e-07,52;UBERON:0005068,1.15e-07,52;UBERON:0006241,1.15e-07,52;UBERON:0007135,1.15e-07,52 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503587271902309,0.405507724878058,0.550640256485045,0,14.8257106338704,14.7189742432096,15.1655321277941,4.75953833526233,8.62515386189829,0,0,0,14.663787854049,6.01720223871389,7.73508138416164,7.08107613008592,5.81890077199236,5.07065122804943,1.0165335962074,0.889294796111139,0,0,0,1.19840044207362,2.30530983192933,6.0139975138917,7.56033254657468,5.25812403378455,2.28520787523043,1.54607978666129,4.77714116938321,5.75072826109418,3.67687514644008,0,2.80912143787413,2.30409799884365,5.40733779693795,4.57438218012048,2.6045668527838,0.279182999001381,0.56276261003168,0.61119299110724,3.53554302568401,2.27794689278565,4.84638559145781,0.681535739998656,0.755715601067855,0.289864488701678,0,1.3599426674155,2.69851595818909,1.94932925234301,0,0.702222100658759,0.170430322578058,0.259786004602869,0.35333957451034,0.985903938436763,0,0,0,0,0,0,0.91347103775248,0,0.445326417194474,1.04091196059682,0.608930956624282,0.691846491768175,1.3565037649736,0.940709657085638,0,0,0.144599356919912,0,2.58826959915855,1.98757366614354,4.363877278217,0,0.878342391034642,1.04723353406728,0,0,0,0,1.64769703345305,0.457500602818626,2.89005009859588,1.91206752211504,1.27857728665165,2.70124457927428,2.27137768294861,0.203678727700633,1.99051152976149,0,0.420883711772948,4.68433594665733,3.44853156650209,5.40186389416048,5.87748789559289,4.62648194229029,7.55870949680614,4.8724896771059,3.10444044886819,1.94011193639558,2.64748512234947,1.58356011747554,1.31517439456545,0.278047249225598,0.348252166522167,1.02891068203972,0.796137067273973,0,0,0,8.28503090142008,10.0846205791871,9.90341338035582,15.6251525486239,16.3314312350345,9.71882811190483,12.7893669612724,10.4626626545851,12.6106569756543,17.114224391002,13.1333971263276,12.3224590509701,9.9415991449226,14.7098577245004,10.468100663309,2.10289948564127,3.19004298375782,0,0,2.98603550749328,1.16118335930219,1.41754207454303,0.605050573870028,0.667134131534611,0,0,0.164698954724011,0.502670417600539,0,0,0,0,0,0.569003702859245,0.571242563048644,0,0.814605311381257,0.193952487167626,0.561086559122548,0.0632365371242573,0,0.156998727841375,0.123397163921801,2.96452627087149,2.00214126859313,0.982794975566015,1.12431056192427,1.01430060694251,0.964708639009667,0.50925170356284,0.863088412352432,0.324270453550071,0.823684239564244,2.87536413054709,2.97712758134803,2.49630138491648,5.80931419278357,1.61457672169721,0.482443521363367,0,1.89491411770485,0.651859905768103,1.18821560042632,0.469380496577004,0.502518772325447,0.238043640886014,0.195133647857799,0.472905432318573,0.664394068946325,0.637819074629948,0,0.172684981865896,0,0,0,0,0,1.12385412991454,1.05490517932983,0.163934945376675,0.252470927204373,3.78609863299508,4.29482618726302,5.81643173878557,3.82350076724083,2.45078541490634,3.67999490025482,3.64329631507405,3.50707029493574,2.76701444562566,0.321321316421807,0.567760340833074,0.35613120733451,0.162886959353576,0.164970122972535,0,0.485561272309963,0,0.565815239267694,0.590603785761546,0,0.258428293168221,0.363533729477506,0,0.316036757935816,0,1.03135543248187,1.02131881726136,6.84232157318979,4.52755393239641,3.21505552547388,2.83744373827638,2.85390108163313,2.63278432963394,3.65357938937519,0,0,0,0.16488625294148,0.161464426695906,0.241251699712623,0,0.328281799490123,0,0.927126510052548,0.170870880797853,0.619160603889667,0.370389054739423,0,0,0,0,0,0,0,2.05618395827738,0.609958401380546,0.756037385752609,0.836353184057875,0.218362563746178,0.134864346384821,0.330613822901344,0.26175594198403,0.129614973291793,0,0,0.897099276263873,0.827292452285488,0.777804753376191,0.387479470433193,0.168956125490778,0.58678619322877,0.651021924219751,0.943734099831398,0.241584120826006,0,0,0.202725215290164,0.616265742988964,0,0,0,0.120195449519969,0,0,0,0,0,0,0,0,0.221985953374065,0.0897138566094757,0.335769232728157,0,0,0,0,0,0,0.920650473014354,0,0.343706364687375,1.37016503954128,0,0,0.45032120322422,0,0,1.3492355185943,3.59122386060928,2.39027048055788,2.67417388775123,1.46729213839588,1.2869045591501,0.666740183404846,1.44224540067226,1.92551525755089,1.01078884705519,3.54871019846336,1.13175804831646,1.12369808963859,1.40855335290712,1.55075766180156,0.952587382566147,3.36064545240081,1.35036454324594,0.824171801606613,2.20798380201596,1.02860775715625,1.24233064311536,1.1921809497366,2.0348498328526,2.72917203204459,1.77690676572521,1.82927972872773,0.526139422875686,1.49384525230448,3.36685362994643,1.42362021749009,1.28055827088233,1.63692417267876,1.85924209423159,1.92906610981141,3.49734809113124,2.10538447600868,2.14871054048298,0.57386499620653,1.54413993383661,1.85494268496337 | |||
|short_description=p6@Cdh2 | |||
}} |
Revision as of 13:35, 5 August 2015
Short description: | p6@Cdh2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Cdh2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1713 |
Association with transcript: | -115bp_to_ENSMUST00000152779_5end |
EntrezGene: | 12558 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 8.19e-14 | 43 |
ectodermal cell | 3.46e-13 | 44 |
neurectodermal cell | 3.46e-13 | 44 |
electrically responsive cell | 6.85e-12 | 39 |
electrically active cell | 6.85e-12 | 39 |
neuron | 9.28e-12 | 33 |
neuronal stem cell | 9.28e-12 | 33 |
neuroblast | 9.28e-12 | 33 |
electrically signaling cell | 9.28e-12 | 33 |
CNS neuron (sensu Vertebrata) | 5.50e-08 | 23 |
neuroblast (sensu Vertebrata) | 5.50e-08 | 23 |
embryonic cell | 2.41e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 6.99e-22 | 92 |
primary circulatory organ | 3.23e-16 | 18 |
heart | 3.23e-16 | 18 |
primitive heart tube | 3.23e-16 | 18 |
primary heart field | 3.23e-16 | 18 |
anterior lateral plate mesoderm | 3.23e-16 | 18 |
heart tube | 3.23e-16 | 18 |
heart primordium | 3.23e-16 | 18 |
cardiac mesoderm | 3.23e-16 | 18 |
cardiogenic plate | 3.23e-16 | 18 |
heart rudiment | 3.23e-16 | 18 |
central nervous system | 2.45e-14 | 73 |
nervous system | 1.89e-13 | 75 |
ectoderm-derived structure | 6.94e-13 | 95 |
ectoderm | 6.94e-13 | 95 |
presumptive ectoderm | 6.94e-13 | 95 |
neurectoderm | 1.22e-12 | 64 |
neural plate | 1.22e-12 | 64 |
presumptive neural plate | 1.22e-12 | 64 |
tube | 3.36e-12 | 114 |
cardiovascular system | 8.47e-11 | 23 |
circulatory system | 8.47e-11 | 23 |
anatomical conduit | 6.22e-10 | 122 |
pre-chordal neural plate | 1.18e-09 | 49 |
ecto-epithelium | 3.91e-09 | 73 |
epithelial tube | 2.34e-08 | 47 |
regional part of nervous system | 2.64e-08 | 54 |
neural tube | 1.15e-07 | 52 |
neural rod | 1.15e-07 | 52 |
future spinal cord | 1.15e-07 | 52 |
neural keel | 1.15e-07 | 52 |