FFCP PHASE1:Mm9::chr2:73613116..73613197,-: Difference between revisions
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{{FFCP|EntrezGene=108699|HGNC=|MCL_coexpression_id=22|UniProt=D6RCX8|association_with_transcript=185bp_to_ENSMUST00000139252_5end|description=CAGE_peak_4_at_Chn1_5end|id=chr2:73613116..73613197,-|ontology_enrichment_celltype=CL:0000540!7.49e-15!33;CL:0000047!7.49e-15!33;CL:0000031!7.49e-15!33;CL:0000404!7.49e-15!33;CL:0000117!2.73e-12!23;CL:0000337!2.73e-12!23;CL:0002319!5.40e-11!43;CL:0000221!5.98e-11!44;CL:0000133!5.98e-11!44;CL:0000393!7.75e-11!39;CL:0000211!7.75e-11!39;CL:0000055!9.73e-08!50|ontology_enrichment_celltype_v019_2=CL:0000540,4.19e-16,33;CL:0000047,4.19e-16,33;CL:0000031,4.19e-16,33;CL:0000404,4.19e-16,33;CL:0000117,1.10e-13,23;CL:0000337,1.10e-13,23;CL:0000393,7.29e-12,39;CL:0000211,7.29e-12,39;CL:0002319,1.33e-11,43;CL:0000221,1.47e-11,44;CL:0000133,1.47e-11,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!1.07e-18!71;UBERON:0003075!1.07e-18!71;UBERON:0007284!1.07e-18!71;UBERON:0001017!2.20e-18!73;UBERON:0005743!2.20e-18!73;UBERON:0000073!2.27e-18!75;UBERON:0001016!2.27e-18!75;UBERON:0004121!5.98e-18!102;UBERON:0000924!5.98e-18!102;UBERON:0006601!5.98e-18!102;UBERON:0003056!5.61e-17!49;UBERON:0000033!7.69e-15!63;UBERON:0001049!1.26e-13!52;UBERON:0005068!1.26e-13!52;UBERON:0006241!1.26e-13!52;UBERON:0007135!1.26e-13!52;UBERON:0003080!5.28e-13!40;UBERON:0002780!9.67e-13!39;UBERON:0001890!9.67e-13!39;UBERON:0006240!9.67e-13!39;UBERON:0002020!1.07e-12!34;UBERON:0002616!1.27e-12!49;UBERON:0000955!1.82e-12!50;UBERON:0006238!1.82e-12!50;UBERON:0002791!7.68e-11!29;UBERON:0003528!7.68e-11!29;UBERON:0001893!7.68e-11!29;UBERON:0000468!4.25e-09!333;UBERON:0000956!1.78e-07!21;UBERON:0001869!1.78e-07!21;UBERON:0000203!1.78e-07!21;UBERON:0000922!3.26e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.14e-19,64;UBERON:0003075,1.14e-19,64;UBERON:0007284,1.14e-19,64;UBERON:0010314,1.57e-17,92;UBERON:0001016,1.74e-17,75;UBERON:0001017,1.81e-17,73;UBERON:0003056,1.87e-17,49;UBERON:0004121,4.27e-17,95;UBERON:0000924,4.27e-17,95;UBERON:0006601,4.27e-17,95;UBERON:0010371,2.67e-15,73;UBERON:0000073,2.22e-14,54;UBERON:0001049,2.16e-13,52;UBERON:0005068,2.16e-13,52;UBERON:0006241,2.16e-13,52;UBERON:0007135,2.16e-13,52;UBERON:0002020,4.64e-13,34;UBERON:0003080,4.66e-13,40;UBERON:0002780,9.21e-13,39;UBERON:0001890,9.21e-13,39;UBERON:0006240,9.21e-13,39;UBERON:0002616,2.11e-11,46;UBERON:0003528,5.50e-11,29;UBERON:0002791,5.50e-11,29;UBERON:0001893,5.50e-11,29;UBERON:0000955,7.98e-11,47;UBERON:0006238,7.98e-11,47;UBERON:0000956,2.87e-07,21;UBERON:0001869,2.87e-07,21;UBERON:0000203,2.87e-07,21|phase1_expression=0.640595388419176,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19060606211498,0,0,0,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0,0.183546752161682,0,1.30815093828268,0.439372365468944,0,0.279972843250725,1.43752564364972,0,0,0,1.28629718017973,0.573066879877513,0,16.589949790487,10.0508286061686,11.4089652631112,0.338844532069132,0.889294796111139,0,0,0,0.299600110518405,1.15265491596466,20.1157847878447,12.5555522648472,12.8298226424343,4.28476476605705,1.98781686856452,19.1085646775328,16.0061936600455,13.7882817991503,3.30347642998166,3.06449611404451,5.06901559745603,14.9031505135119,15.186948838,14.5855743755893,2.79182999001381,3.93933827022176,6.26472815884921,5.30331453852602,4.6982654663704,19.199142920006,1.4387976733305,1.51143120213571,0.289864488701678,0,0.679971333707751,0,0,0,0.280888840263504,0,0,0,1.40843419776681,0,0,0,0,0.506719730950197,0,0.68510327831436,0.258937883647172,0.593768556259299,3.29622120855658,0.913396434936424,1.38369298353635,1.20578112442098,2.11659672844269,0.502666365318702,0.247194967734374,0,0.884610551949874,1.29413479957927,0.220841518460394,0.484875253135222,0,0.878342391034642,0.41889341362691,0.510914110417183,0,0,0,3.74476598512057,2.28750301409313,17.0889918873496,3.99795936442236,4.85859368927628,4.1557608911912,2.43361894601636,1.2220723662038,0.248813941220186,0.252722758433675,1.26265113531884,4.94457683258274,6.89706313300419,8.82304436046211,8.13806016312861,6.46346741937615,6.79002717509704,10.1197862524507,3.62184719034622,6.25147179505242,7.37513712654495,5.63043597324636,3.94552318369635,1.94633074457919,1.39300866608867,2.05782136407943,1.39323986772945,0,0,0,2.69263504296152,2.81431271977315,3.06105504483725,4.49814997611899,4.32881309844288,3.85667782218446,2.09280550275367,3.75582761959467,4.08678698285093,3.94943639792353,1.80584210487005,1.05389452409612,0.730999937126662,1.09775057645525,0.671032093801859,6.30869845692382,16.4647379806855,0,0,4.69234151177515,3.25131340604614,2.19074684247559,3.22693639397348,2.2237804384487,1.71203063501303,0,1.97638745668813,1.00534083520108,1.79060824837036,0.779856348476481,0.898819408654221,0.216138049874694,0.398282546508734,2.27601481143698,1.5994791765362,1.1270773567308,1.01825663922657,1.16371492300575,1.05203729835478,0.822074982615345,0.590440591918409,0.470996183524124,0,0,0.83422552858047,0.78623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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:108699 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:D6RCX8 | |||
|association_with_transcript=185bp_to_ENSMUST00000139252_5end | |||
|cluster_id=chr2:73613116..73613197,- | |||
|description=CAGE_peak_4_at_Chn1_5end | |||
|id=chr2:73613116..73613197,- | |||
|ontology_enrichment_celltype=CL:0000540!7.49e-15!33;CL:0000047!7.49e-15!33;CL:0000031!7.49e-15!33;CL:0000404!7.49e-15!33;CL:0000117!2.73e-12!23;CL:0000337!2.73e-12!23;CL:0002319!5.40e-11!43;CL:0000221!5.98e-11!44;CL:0000133!5.98e-11!44;CL:0000393!7.75e-11!39;CL:0000211!7.75e-11!39;CL:0000055!9.73e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,4.19e-16,33;CL:0000047,4.19e-16,33;CL:0000031,4.19e-16,33;CL:0000404,4.19e-16,33;CL:0000117,1.10e-13,23;CL:0000337,1.10e-13,23;CL:0000393,7.29e-12,39;CL:0000211,7.29e-12,39;CL:0002319,1.33e-11,43;CL:0000221,1.47e-11,44;CL:0000133,1.47e-11,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!1.07e-18!71;UBERON:0003075!1.07e-18!71;UBERON:0007284!1.07e-18!71;UBERON:0001017!2.20e-18!73;UBERON:0005743!2.20e-18!73;UBERON:0000073!2.27e-18!75;UBERON:0001016!2.27e-18!75;UBERON:0004121!5.98e-18!102;UBERON:0000924!5.98e-18!102;UBERON:0006601!5.98e-18!102;UBERON:0003056!5.61e-17!49;UBERON:0000033!7.69e-15!63;UBERON:0001049!1.26e-13!52;UBERON:0005068!1.26e-13!52;UBERON:0006241!1.26e-13!52;UBERON:0007135!1.26e-13!52;UBERON:0003080!5.28e-13!40;UBERON:0002780!9.67e-13!39;UBERON:0001890!9.67e-13!39;UBERON:0006240!9.67e-13!39;UBERON:0002020!1.07e-12!34;UBERON:0002616!1.27e-12!49;UBERON:0000955!1.82e-12!50;UBERON:0006238!1.82e-12!50;UBERON:0002791!7.68e-11!29;UBERON:0003528!7.68e-11!29;UBERON:0001893!7.68e-11!29;UBERON:0000468!4.25e-09!333;UBERON:0000956!1.78e-07!21;UBERON:0001869!1.78e-07!21;UBERON:0000203!1.78e-07!21;UBERON:0000922!3.26e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.14e-19,64;UBERON:0003075,1.14e-19,64;UBERON:0007284,1.14e-19,64;UBERON:0010314,1.57e-17,92;UBERON:0001016,1.74e-17,75;UBERON:0001017,1.81e-17,73;UBERON:0003056,1.87e-17,49;UBERON:0004121,4.27e-17,95;UBERON:0000924,4.27e-17,95;UBERON:0006601,4.27e-17,95;UBERON:0010371,2.67e-15,73;UBERON:0000073,2.22e-14,54;UBERON:0001049,2.16e-13,52;UBERON:0005068,2.16e-13,52;UBERON:0006241,2.16e-13,52;UBERON:0007135,2.16e-13,52;UBERON:0002020,4.64e-13,34;UBERON:0003080,4.66e-13,40;UBERON:0002780,9.21e-13,39;UBERON:0001890,9.21e-13,39;UBERON:0006240,9.21e-13,39;UBERON:0002616,2.11e-11,46;UBERON:0003528,5.50e-11,29;UBERON:0002791,5.50e-11,29;UBERON:0001893,5.50e-11,29;UBERON:0000955,7.98e-11,47;UBERON:0006238,7.98e-11,47;UBERON:0000956,2.87e-07,21;UBERON:0001869,2.87e-07,21;UBERON:0000203,2.87e-07,21 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19060606211498,0,0,0,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0,0.183546752161682,0,1.30815093828268,0.439372365468944,0,0.279972843250725,1.43752564364972,0,0,0,1.28629718017973,0.573066879877513,0,16.589949790487,10.0508286061686,11.4089652631112,0.338844532069132,0.889294796111139,0,0,0,0.299600110518405,1.15265491596466,20.1157847878447,12.5555522648472,12.8298226424343,4.28476476605705,1.98781686856452,19.1085646775328,16.0061936600455,13.7882817991503,3.30347642998166,3.06449611404451,5.06901559745603,14.9031505135119,15.186948838,14.5855743755893,2.79182999001381,3.93933827022176,6.26472815884921,5.30331453852602,4.6982654663704,19.199142920006,1.4387976733305,1.51143120213571,0.289864488701678,0,0.679971333707751,0,0,0,0.280888840263504,0,0,0,1.40843419776681,0,0,0,0,0.506719730950197,0,0.68510327831436,0.258937883647172,0.593768556259299,3.29622120855658,0.913396434936424,1.38369298353635,1.20578112442098,2.11659672844269,0.502666365318702,0.247194967734374,0,0.884610551949874,1.29413479957927,0.220841518460394,0.484875253135222,0,0.878342391034642,0.41889341362691,0.510914110417183,0,0,0,3.74476598512057,2.28750301409313,17.0889918873496,3.99795936442236,4.85859368927628,4.1557608911912,2.43361894601636,1.2220723662038,0.248813941220186,0.252722758433675,1.26265113531884,4.94457683258274,6.89706313300419,8.82304436046211,8.13806016312861,6.46346741937615,6.79002717509704,10.1197862524507,3.62184719034622,6.25147179505242,7.37513712654495,5.63043597324636,3.94552318369635,1.94633074457919,1.39300866608867,2.05782136407943,1.39323986772945,0,0,0,2.69263504296152,2.81431271977315,3.06105504483725,4.49814997611899,4.32881309844288,3.85667782218446,2.09280550275367,3.75582761959467,4.08678698285093,3.94943639792353,1.80584210487005,1.05389452409612,0.730999937126662,1.09775057645525,0.671032093801859,6.30869845692382,16.4647379806855,0,0,4.69234151177515,3.25131340604614,2.19074684247559,3.22693639397348,2.2237804384487,1.71203063501303,0,1.97638745668813,1.00534083520108,1.79060824837036,0.779856348476481,0.898819408654221,0.216138049874694,0.398282546508734,2.27601481143698,1.5994791765362,1.1270773567308,1.01825663922657,1.16371492300575,1.05203729835478,0.822074982615345,0.590440591918409,0.470996183524124,0,0,0.83422552858047,0.786235980452812,0,0,0,0,0,0,0,0,0,0,0,0,0,0.554259570499814,3.41084541186873,4.07412441105065,2.37643120085263,1.17345124144251,1.17254380209271,1.19021820443007,1.17080188714679,4.25614889086716,3.32197034473162,3.02964060449226,0.491589944147214,0.863424909329478,0,0,0,0,0.275936746304732,2.24770825982909,3.7507739709505,0,0,6.31016438832513,8.98009111882268,7.97066571611356,1.91175038362042,3.56477878531831,3.11384183867716,3.23848561339915,6.13737301613755,5.92931666919785,0.963963949265421,0.141940085208269,0.35613120733451,1.62886959353576,0.164970122972535,0,1.21390318077491,1.51161778482376,0.377210159511796,0.590603785761546,0.614870295887855,1.55056975900933,0.727067458955011,1.06949213515416,0.316036757935816,0,0,0.680879211507576,8.10274923140896,3.36332577835162,4.28674070063185,2.48276327099183,3.56737635204141,4.27827453565514,2.43571959291679,0.23467170806371,0.42366414172764,0.220528398054962,0,1.45317984026315,0.904693873922338,0.358117032009409,0,0,1.29797711407357,0,0.206386867963223,0.925972636848558,0.376736914009382,0,0,0.169978429993855,0,0,0,3.79603192297362,2.64315307264903,1.51207477150522,0.627264888043406,0.655087691238533,0.809186078308924,0.826534557253359,0.26175594198403,0.259229946583586,0,0.56369293868419,3.43888055901151,3.47462829959905,2.52786544847262,3.09983576346555,2.19642963138012,1.64300134104056,5.9894017028217,8.91304427618542,3.8653459332161,4.89651010638371,0,0.608175645870493,0.205421914329655,0.129920822977795,0.358053391334963,0.198681354781265,0.120195449519969,0,0,0,0,0,0,0,0.226730383615211,0.221985953374065,0.538283139656854,0.335769232728157,0.386379188064381,0.187682475451182,0.549454872801795,0.214368379079066,0,7.90652579663893,6.90487854760765,10.3121192419091,5.84300819968538,2.74033007908257,0.755393897389701,4.05013500139084,0.900642406448441,6.79713613476307,3.10656187051092,9.02949923982337,15.1629451892392,7.0000778359195,4.37592090722929,4.19226325255965,3.30918315210025,3.33370091702423,3.29656091582231,4.81378814387723,6.57012750585873,2.5347929989024,3.2066478035633,3.37109426891577,4.22566005872137,4.65227298540468,5.23923060411381,5.56244764535306,5.98018583437486,3.70877310722976,2.50238164228475,1.71434626192708,3.01708870470874,4.29185141905178,5.23247099876383,2.1645157495526,4.23073039458383,4.20734337607377,2.89376682581627,3.80251518768413,2.80571135828869,4.50813068871862,5.1222330835293,2.45538625901814,4.33823155320705,2.89359916471712,5.74564329257276,2.10538447600868,2.14871054048298,1.53030665655075,1.32354851471709,0.463735671240843 | |||
|short_description=p4@Chn1 | |||
}} |
Revision as of 11:04, 5 August 2015
Short description: | p4@Chn1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Chn1_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 185bp_to_ENSMUST00000139252_5end |
EntrezGene: | 108699 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 4.19e-16 | 33 |
neuronal stem cell | 4.19e-16 | 33 |
neuroblast | 4.19e-16 | 33 |
electrically signaling cell | 4.19e-16 | 33 |
CNS neuron (sensu Vertebrata) | 1.10e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.10e-13 | 23 |
electrically responsive cell | 7.29e-12 | 39 |
electrically active cell | 7.29e-12 | 39 |
neural cell | 1.33e-11 | 43 |
ectodermal cell | 1.47e-11 | 44 |
neurectodermal cell | 1.47e-11 | 44 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.14e-19 | 64 |
neural plate | 1.14e-19 | 64 |
presumptive neural plate | 1.14e-19 | 64 |
structure with developmental contribution from neural crest | 1.57e-17 | 92 |
nervous system | 1.74e-17 | 75 |
central nervous system | 1.81e-17 | 73 |
pre-chordal neural plate | 1.87e-17 | 49 |
ectoderm-derived structure | 4.27e-17 | 95 |
ectoderm | 4.27e-17 | 95 |
presumptive ectoderm | 4.27e-17 | 95 |
ecto-epithelium | 2.67e-15 | 73 |
regional part of nervous system | 2.22e-14 | 54 |
neural tube | 2.16e-13 | 52 |
neural rod | 2.16e-13 | 52 |
future spinal cord | 2.16e-13 | 52 |
neural keel | 2.16e-13 | 52 |
gray matter | 4.64e-13 | 34 |
anterior neural tube | 4.66e-13 | 40 |
regional part of forebrain | 9.21e-13 | 39 |
forebrain | 9.21e-13 | 39 |
future forebrain | 9.21e-13 | 39 |
regional part of brain | 2.11e-11 | 46 |
brain grey matter | 5.50e-11 | 29 |
regional part of telencephalon | 5.50e-11 | 29 |
telencephalon | 5.50e-11 | 29 |
brain | 7.98e-11 | 47 |
future brain | 7.98e-11 | 47 |
cerebral cortex | 2.87e-07 | 21 |
cerebral hemisphere | 2.87e-07 | 21 |
pallium | 2.87e-07 | 21 |