FFCP PHASE1:Mm9::chr2:4322439..4322546,+: Difference between revisions
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{{FFCP|EntrezGene=209630|HGNC=|MCL_coexpression_id=3352|UniProt=B1AXK0|association_with_transcript=0bp_to_ENSMUST00000115039_5end|description=CAGE_peak_3_at_Frmd4a_5end|id=chr2:4322439..4322546,+|ontology_enrichment_celltype=CL:0000393!2.58e-13!39;CL:0000211!2.58e-13!39;CL:0000540!6.78e-13!33;CL:0000047!6.78e-13!33;CL:0000031!6.78e-13!33;CL:0000404!6.78e-13!33;CL:0000055!2.17e-11!50;CL:0002319!8.72e-11!43;CL:0000221!1.18e-10!44;CL:0000133!1.18e-10!44;CL:0000117!7.33e-08!23;CL:0000337!7.33e-08!23;CL:0000107!3.24e-07!9|ontology_enrichment_celltype_v019_2=CL:0000393,1.25e-13,39;CL:0000211,1.25e-13,39;CL:0000540,3.38e-13,33;CL:0000047,3.38e-13,33;CL:0000031,3.38e-13,33;CL:0000404,3.38e-13,33;CL:0002319,1.70e-10,43;CL:0000221,2.27e-10,44;CL:0000133,2.27e-10,44;CL:0000117,4.97e-08,23;CL:0000337,4.97e-08,23;CL:0000107,2.29e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!6.01e-10!102;UBERON:0000924!6.01e-10!102;UBERON:0006601!6.01e-10!102;UBERON:0000073!1.42e-09!75;UBERON:0001016!1.42e-09!75;UBERON:0000468!1.46e-09!333;UBERON:0000010!1.29e-08!11;UBERON:0001017!1.39e-08!73;UBERON:0005743!1.39e-08!73;UBERON:0000922!1.10e-07!328;UBERON:0002410!3.24e-07!9|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.06e-09,95;UBERON:0000924,2.06e-09,95;UBERON:0006601,2.06e-09,95;UBERON:0001016,7.72e-09,75;UBERON:0000010,8.39e-09,11;UBERON:0001017,7.14e-08,73;UBERON:0010314,1.10e-07,92;UBERON:0002410,2.29e-07,9|phase1_expression=1.76163731815273,0,0,0,0,0.16787927191189,0.233612640595526,0,0,0,0,0.0797721589953364,0.342401459862411,0,0.333109761815663,0.404950534779652,0,0,0.137114433605739,0,0.765389611359628,0,0,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.40638862914521,4.8660926985367,4.9557623083654,1.56478268869608,0.872100625521786,0.878744730937887,1.36100929351998,1.67983705950435,4.31257693094915,0,0,0,5.91696702882678,2.29226751951005,1.54701627683233,7.68802551266472,4.7609188134483,4.43681982454325,2.03306719241479,3.55717918444456,1.3498495759221,0,0,0.599200221036809,1.92109152660777,11.716926190858,9.18040380655497,9.04397333810943,1.99955689082663,3.09215957332259,13.1065155160001,14.6643570657902,9.19218786610021,2.20231761998777,3.06449611404451,3.07213066512487,6.19865552331911,11.161492519494,10.4182674111352,3.07101298901519,3.37657566019008,3.66715794664344,7.36571463684169,6.69146899755784,7.82877672466262,32.6379893266023,29.4729084416464,8.40607017234866,2.58127163094416,0,0,0,0,0.561777680527007,3.2381761289831,1.29893002301434,4.24007489412408,2.39433813620357,1.28326477414318,2.54805239706646,7.11066703153331,1.5154372870785,0.760079596425296,1.51657333504435,0.45673551887624,9.83963957859253,1.7813056687779,3.81667718885499,2.74018930480927,3.68984795609694,1.80867168663147,1.52865319276416,1.75933227861546,0.741584903203122,1.44599356919912,0.884610551949874,3.23533699894818,1.54589062922275,1.93950101254089,0,2.92780797011547,2.30391377494801,0,0.239630249011841,0.599902730993408,0,6.29120685500255,6.40500843946077,9.1727677042391,2.08589184230732,3.06858548796397,3.53239675751252,3.73154905055843,2.85150218780886,2.11491850037158,0.252722758433675,1.26265113531884,4.81445638962004,5.28774840196988,4.86167750474443,4.37043971723574,3.87808045162569,4.48398020996974,3.5606655332697,2.32833033665114,5.6047678162539,8.32066752738405,10.5570674498369,3.94552318369635,8.61946472599353,4.87553033131033,5.96768195583036,1.79130840136644,0,0,0,2.27838349789052,3.98694301967864,4.32148947506436,4.02466050494857,2.75469924446365,4.62801338662135,4.88321283975857,5.36546802799238,3.03589890154641,3.45575684818309,5.25335885053105,3.89130285820108,3.94739966048397,4.83010253640311,5.2340503316545,2.3131894342054,10.7020796874456,0.330418782983798,0,4.26576501070468,5.57368012465052,3.8660238396628,2.42020229548011,1.77902435075896,2.47293313946327,0,1.15289268306808,2.01068167040216,1.1937388322469,3.11942539390592,0,1.08069024937347,0.398282546508734,2.0863469104839,2.85621281524322,2.25415471346161,3.66572390121566,3.10323979468201,2.52488951605147,2.84564417059158,0.442830443938806,1.255989822731,0.493588655687202,0.889357881261447,0.667380422864376,0.982794975566015,0,1.21716072833102,0.482354319504834,0.50925170356284,1.15078454980324,0.648540907100142,1.09824565275233,1.43768206527355,2.97712758134803,1.24815069245824,1.26289438973556,1.07638448113147,0,1.29327233116623,3.03186258832776,5.21487924614483,6.11082308790677,4.92849521405854,5.3602002381381,5.47500374037832,2.34160377429359,6.77831119656621,5.53661724121937,6.53764551495697,3.11340297959902,3.45369963731791,2.60368305446721,0,0,1.47529281905711,1.37968373152366,6.10092241953609,4.10240903072711,2.62295912602681,2.27223834483936,11.042787679569,13.2749173060857,10.3403230911743,10.5146271099123,15.3731085116852,18.3999745012741,9.71545684019746,14.6127928955656,11.4633455604492,7.39039027770156,1.13552068166615,2.31485284767432,2.44330439030364,0.659880491890142,1.3274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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:209630 | |||
|HGNC= | |||
|MCL_coexpression_id=3352 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:B1AXK0 | |||
|association_with_transcript=0bp_to_ENSMUST00000115039_5end | |||
|cluster_id=chr2:4322439..4322546,+ | |||
|description=CAGE_peak_3_at_Frmd4a_5end | |||
|id=chr2:4322439..4322546,+ | |||
|ontology_enrichment_celltype=CL:0000393!2.58e-13!39;CL:0000211!2.58e-13!39;CL:0000540!6.78e-13!33;CL:0000047!6.78e-13!33;CL:0000031!6.78e-13!33;CL:0000404!6.78e-13!33;CL:0000055!2.17e-11!50;CL:0002319!8.72e-11!43;CL:0000221!1.18e-10!44;CL:0000133!1.18e-10!44;CL:0000117!7.33e-08!23;CL:0000337!7.33e-08!23;CL:0000107!3.24e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,1.25e-13,39;CL:0000211,1.25e-13,39;CL:0000540,3.38e-13,33;CL:0000047,3.38e-13,33;CL:0000031,3.38e-13,33;CL:0000404,3.38e-13,33;CL:0002319,1.70e-10,43;CL:0000221,2.27e-10,44;CL:0000133,2.27e-10,44;CL:0000117,4.97e-08,23;CL:0000337,4.97e-08,23;CL:0000107,2.29e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!6.01e-10!102;UBERON:0000924!6.01e-10!102;UBERON:0006601!6.01e-10!102;UBERON:0000073!1.42e-09!75;UBERON:0001016!1.42e-09!75;UBERON:0000468!1.46e-09!333;UBERON:0000010!1.29e-08!11;UBERON:0001017!1.39e-08!73;UBERON:0005743!1.39e-08!73;UBERON:0000922!1.10e-07!328;UBERON:0002410!3.24e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.06e-09,95;UBERON:0000924,2.06e-09,95;UBERON:0006601,2.06e-09,95;UBERON:0001016,7.72e-09,75;UBERON:0000010,8.39e-09,11;UBERON:0001017,7.14e-08,73;UBERON:0010314,1.10e-07,92;UBERON:0002410,2.29e-07,9 | |||
|phase1_expression=1.76163731815273,0,0,0,0,0.16787927191189,0.233612640595526,0,0,0,0,0.0797721589953364,0.342401459862411,0,0.333109761815663,0.404950534779652,0,0,0.137114433605739,0,0.765389611359628,0,0,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.40638862914521,4.8660926985367,4.9557623083654,1.56478268869608,0.872100625521786,0.878744730937887,1.36100929351998,1.67983705950435,4.31257693094915,0,0,0,5.91696702882678,2.29226751951005,1.54701627683233,7.68802551266472,4.7609188134483,4.43681982454325,2.03306719241479,3.55717918444456,1.3498495759221,0,0,0.599200221036809,1.92109152660777,11.716926190858,9.18040380655497,9.04397333810943,1.99955689082663,3.09215957332259,13.1065155160001,14.6643570657902,9.19218786610021,2.20231761998777,3.06449611404451,3.07213066512487,6.19865552331911,11.161492519494,10.4182674111352,3.07101298901519,3.37657566019008,3.66715794664344,7.36571463684169,6.69146899755784,7.82877672466262,32.6379893266023,29.4729084416464,8.40607017234866,2.58127163094416,0,0,0,0,0.561777680527007,3.2381761289831,1.29893002301434,4.24007489412408,2.39433813620357,1.28326477414318,2.54805239706646,7.11066703153331,1.5154372870785,0.760079596425296,1.51657333504435,0.45673551887624,9.83963957859253,1.7813056687779,3.81667718885499,2.74018930480927,3.68984795609694,1.80867168663147,1.52865319276416,1.75933227861546,0.741584903203122,1.44599356919912,0.884610551949874,3.23533699894818,1.54589062922275,1.93950101254089,0,2.92780797011547,2.30391377494801,0,0.239630249011841,0.599902730993408,0,6.29120685500255,6.40500843946077,9.1727677042391,2.08589184230732,3.06858548796397,3.53239675751252,3.73154905055843,2.85150218780886,2.11491850037158,0.252722758433675,1.26265113531884,4.81445638962004,5.28774840196988,4.86167750474443,4.37043971723574,3.87808045162569,4.48398020996974,3.5606655332697,2.32833033665114,5.6047678162539,8.32066752738405,10.5570674498369,3.94552318369635,8.61946472599353,4.87553033131033,5.96768195583036,1.79130840136644,0,0,0,2.27838349789052,3.98694301967864,4.32148947506436,4.02466050494857,2.75469924446365,4.62801338662135,4.88321283975857,5.36546802799238,3.03589890154641,3.45575684818309,5.25335885053105,3.89130285820108,3.94739966048397,4.83010253640311,5.2340503316545,2.3131894342054,10.7020796874456,0.330418782983798,0,4.26576501070468,5.57368012465052,3.8660238396628,2.42020229548011,1.77902435075896,2.47293313946327,0,1.15289268306808,2.01068167040216,1.1937388322469,3.11942539390592,0,1.08069024937347,0.398282546508734,2.0863469104839,2.85621281524322,2.25415471346161,3.66572390121566,3.10323979468201,2.52488951605147,2.84564417059158,0.442830443938806,1.255989822731,0.493588655687202,0.889357881261447,0.667380422864376,0.982794975566015,0,1.21716072833102,0.482354319504834,0.50925170356284,1.15078454980324,0.648540907100142,1.09824565275233,1.43768206527355,2.97712758134803,1.24815069245824,1.26289438973556,1.07638448113147,0,1.29327233116623,3.03186258832776,5.21487924614483,6.11082308790677,4.92849521405854,5.3602002381381,5.47500374037832,2.34160377429359,6.77831119656621,5.53661724121937,6.53764551495697,3.11340297959902,3.45369963731791,2.60368305446721,0,0,1.47529281905711,1.37968373152366,6.10092241953609,4.10240903072711,2.62295912602681,2.27223834483936,11.042787679569,13.2749173060857,10.3403230911743,10.5146271099123,15.3731085116852,18.3999745012741,9.71545684019746,14.6127928955656,11.4633455604492,7.39039027770156,1.13552068166615,2.31485284767432,2.44330439030364,0.659880491890142,1.32745138339963,1.94224508923985,2.41858845571801,1.88605079755898,0.885905678642318,2.15204603560749,3.35956781118687,2.18120237686503,2.13898427030833,2.21225730555071,1.05418608574999,3.09406629744561,0.680879211507576,4.14140516272013,2.71653235943784,2.57204442037911,2.12808280370728,1.42695054081656,1.97458824722545,0.608929898229199,2.11204537257339,2.33015277950202,0.661585194164886,2.14352128823924,5.32832608096488,6.75504759195346,2.50681922406587,2.9545361954111,0.874442509889552,5.19190845629427,1.02522528478712,5.36605856704379,5.18544676635193,0.941842285023455,1.23024804948923,1.14389086603261,0.339956859987711,0.419854356970974,0.138199973804424,0.954670618015114,5.53587988766987,4.87966721104437,4.75223499615926,5.85447228840512,4.14888871117737,2.96701562046606,1.73572257023205,1.57053565190418,0.777689839750757,1.86401793926078,0,3.88743019714345,2.97825282822776,2.13896307178452,3.35815541042101,3.04121025883401,2.93393096614385,2.47388331203505,1.57289016638566,0.241584120826006,0.864090018773596,0.948033361884535,3.04087822935246,1.95150818613172,0.389762468933385,0.716106782669926,0.596044064343795,1.08175904567972,0.443068581523732,0.706765149637033,0.609654453239999,0.705783295957884,0.38983152295901,0.192423683280659,0.233753804363138,1.13365191807606,0.665957860122194,0.62799699626633,0.167884616364078,0.772758376128762,7.13193406714492,1.46521299413812,0.857473516316263,0.501572104035363,1.6942555278512,2.30162618253588,1.718686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| |||
|short_description=p3@Frmd4a | |||
}} |
Revision as of 04:25, 5 August 2015
Short description: | p3@Frmd4a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Frmd4a_5end |
Coexpression cluster: | MCL_coexpression_mm9:3352 |
Association with transcript: | 0bp_to_ENSMUST00000115039_5end |
EntrezGene: | 209630 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 1.25e-13 | 39 |
electrically active cell | 1.25e-13 | 39 |
neuron | 3.38e-13 | 33 |
neuronal stem cell | 3.38e-13 | 33 |
neuroblast | 3.38e-13 | 33 |
electrically signaling cell | 3.38e-13 | 33 |
neural cell | 1.70e-10 | 43 |
ectodermal cell | 2.27e-10 | 44 |
neurectodermal cell | 2.27e-10 | 44 |
CNS neuron (sensu Vertebrata) | 4.97e-08 | 23 |
neuroblast (sensu Vertebrata) | 4.97e-08 | 23 |
autonomic neuron | 2.29e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 2.06e-09 | 95 |
ectoderm | 2.06e-09 | 95 |
presumptive ectoderm | 2.06e-09 | 95 |
nervous system | 7.72e-09 | 75 |
peripheral nervous system | 8.39e-09 | 11 |
central nervous system | 7.14e-08 | 73 |
structure with developmental contribution from neural crest | 1.10e-07 | 92 |
autonomic nervous system | 2.29e-07 | 9 |