FFCP PHASE1:Mm9::chr15:27955589..27955634,-: Difference between revisions
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{{FFCP|EntrezGene=223435|HGNC=|MCL_coexpression_id=959|UniProt=Q0KL02|association_with_transcript=0bp_to_ENSMUST00000090247,NM_001081302,uc007vjw.1_5end|description=CAGE_peak_1_at_Trio_5end|id=chr15:27955589..27955634,-|ontology_enrichment_celltype=CL:0000540!7.13e-14!33;CL:0000047!7.13e-14!33;CL:0000031!7.13e-14!33;CL:0000404!7.13e-14!33;CL:0000393!2.00e-13!39;CL:0000211!2.00e-13!39;CL:0000117!6.81e-10!23;CL:0000337!6.81e-10!23;CL:0000221!9.83e-10!44;CL:0000133!9.83e-10!44;CL:0002319!2.42e-09!43;CL:0000055!4.99e-09!50|ontology_enrichment_celltype_v019_2=CL:0000540,6.98e-14,33;CL:0000047,6.98e-14,33;CL:0000031,6.98e-14,33;CL:0000404,6.98e-14,33;CL:0000393,1.96e-13,39;CL:0000211,1.96e-13,39;CL:0000117,6.71e-10,23;CL:0000337,6.71e-10,23;CL:0000221,8.96e-10,44;CL:0000133,8.96e-10,44;CL:0002319,2.21e-09,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!1.05e-18!102;UBERON:0000924!1.05e-18!102;UBERON:0006601!1.05e-18!102;UBERON:0000073!2.95e-18!75;UBERON:0001016!2.95e-18!75;UBERON:0001017!2.78e-17!73;UBERON:0005743!2.78e-17!73;UBERON:0002020!9.51e-15!34;UBERON:0002346!2.66e-14!71;UBERON:0003075!2.66e-14!71;UBERON:0007284!2.66e-14!71;UBERON:0001049!2.29e-13!52;UBERON:0005068!2.29e-13!52;UBERON:0006241!2.29e-13!52;UBERON:0007135!2.29e-13!52;UBERON:0002780!1.43e-12!39;UBERON:0001890!1.43e-12!39;UBERON:0006240!1.43e-12!39;UBERON:0003080!1.92e-12!40;UBERON:0000468!3.37e-12!333;UBERON:0002791!3.49e-12!29;UBERON:0003528!3.49e-12!29;UBERON:0001893!3.49e-12!29;UBERON:0003056!3.82e-12!49;UBERON:0000033!4.37e-12!63;UBERON:0000955!1.09e-11!50;UBERON:0006238!1.09e-11!50;UBERON:0002616!2.35e-11!49;UBERON:0000956!2.88e-10!21;UBERON:0001869!2.88e-10!21;UBERON:0000203!2.88e-10!21;UBERON:0000922!8.33e-09!328;UBERON:0002619!7.03e-08!17;UBERON:0004111!2.04e-07!122;UBERON:0000025!3.26e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.21e-18,95;UBERON:0000924,2.21e-18,95;UBERON:0006601,2.21e-18,95;UBERON:0001016,2.62e-18,75;UBERON:0001017,2.48e-17,73;UBERON:0010371,4.05e-15,73;UBERON:0010314,6.50e-15,92;UBERON:0002020,9.30e-15,34;UBERON:0002346,3.51e-14,64;UBERON:0003075,3.51e-14,64;UBERON:0007284,3.51e-14,64;UBERON:0000073,9.06e-14,54;UBERON:0001049,2.24e-13,52;UBERON:0005068,2.24e-13,52;UBERON:0006241,2.24e-13,52;UBERON:0007135,2.24e-13,52;UBERON:0002780,1.41e-12,39;UBERON:0001890,1.41e-12,39;UBERON:0006240,1.41e-12,39;UBERON:0003080,1.88e-12,40;UBERON:0003528,3.43e-12,29;UBERON:0002791,3.43e-12,29;UBERON:0001893,3.43e-12,29;UBERON:0003056,3.76e-12,49;UBERON:0000955,1.03e-11,47;UBERON:0006238,1.03e-11,47;UBERON:0002616,2.23e-11,46;UBERON:0000956,2.84e-10,21;UBERON:0001869,2.84e-10,21;UBERON:0000203,2.84e-10,21;UBERON:0000922,5.70e-10,320;UBERON:0002619,6.96e-08,17;UBERON:0004111,2.02e-07,122;UBERON:0000025,3.23e-07,114|phase1_expression=18.7374151112609,4.53668029931169,3.63999391511629,2.72217790176147,4.00716583957078,4.53274034162102,4.20502753071946,0.129123323441576,2.53419699873,2.34064526321993,0.171217968225505,0.239316476986009,0,0.0874204024189974,0.999329285446988,0.202475267389826,0,0,0,0,8.33424243480484,0.198581902401771,0.261199789138935,1.91990907352088,1.60586496747019,5.7423196411502,2.58457197695445,1.29282739611533,3.42042155021473,3.02436155711917,3.32595765982957,0,0,0,5.77703239502549,3.32469290716985,5.51257261908397,0,0,0,0,0,0,12.8414754335089,14.192770370732,11.3798986340243,4.69434806608824,1.74420125104357,3.73466510648602,7.38833616482277,3.77963338388479,0,0.503347818173209,0,0.336093799142464,9.00408026125814,11.4613375975503,14.4388185837684,42.8910897022347,46.5512061759389,32.3254015788151,7.79342423759004,5.33576877666684,8.09909745553259,1.97773272513395,3.5524005747305,7.19040265244171,4.99483796918021,38.8836046156791,41.3118171294973,38.9101178500057,18.5673139862472,17.8903518170807,42.626798126804,42.5553891320969,36.7687514644008,9.91042928994498,14.5563565417114,11.8277030607307,50.380561912934,47.6650623168554,33.3384557156326,6.42120897703176,8.4414391504752,14.8214300343506,32.4091444021034,28.7590795214188,40.4486797440902,19.8402626532942,20.9333221495796,20.5803786978191,5.16254326188832,3.39985666853875,2.69851595818909,1.94932925234301,1.34408066129201,2.94933282276679,4.77204903218562,4.67614808285164,1.7666978725517,19.2955485094052,3.84979432242953,7.64415719119937,0,10.3915699685383,11.6545538118545,8.08839112023653,2.96878087269556,1.29468941823586,12.1722554033156,12.6644288539279,12.1786191324856,11.0695438682908,9.79697163592047,17.9910721917628,9.80199412371469,6.17987419335935,5.78397427679647,1.76922110389975,13.426648545635,4.41683036920787,8.727754556434,14.9113408974498,39.8181883935704,44.8215952580794,3.57639877292028,1.91704199209472,1.19980546198682,1.65191295194984,11.3840885947665,16.9275223042892,46.2408015775341,25.5521750682646,24.0372529890511,12.259494629014,17.0353326221146,17.3126918545538,8.21086006026614,11.3725241295154,5.6819301089348,11.7108398666433,11.0353010128067,10.08347926909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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:223435 | |||
|HGNC= | |||
|MCL_coexpression_id=959 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q0KL02 | |||
|association_with_transcript=0bp_to_ENSMUST00000090247,NM_001081302,uc007vjw.1_5end | |||
|cluster_id=chr15:27955589..27955634,- | |||
|description=CAGE_peak_1_at_Trio_5end | |||
|id=chr15:27955589..27955634,- | |||
|ontology_enrichment_celltype=CL:0000540!7.13e-14!33;CL:0000047!7.13e-14!33;CL:0000031!7.13e-14!33;CL:0000404!7.13e-14!33;CL:0000393!2.00e-13!39;CL:0000211!2.00e-13!39;CL:0000117!6.81e-10!23;CL:0000337!6.81e-10!23;CL:0000221!9.83e-10!44;CL:0000133!9.83e-10!44;CL:0002319!2.42e-09!43;CL:0000055!4.99e-09!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,6.98e-14,33;CL:0000047,6.98e-14,33;CL:0000031,6.98e-14,33;CL:0000404,6.98e-14,33;CL:0000393,1.96e-13,39;CL:0000211,1.96e-13,39;CL:0000117,6.71e-10,23;CL:0000337,6.71e-10,23;CL:0000221,8.96e-10,44;CL:0000133,8.96e-10,44;CL:0002319,2.21e-09,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.05e-18!102;UBERON:0000924!1.05e-18!102;UBERON:0006601!1.05e-18!102;UBERON:0000073!2.95e-18!75;UBERON:0001016!2.95e-18!75;UBERON:0001017!2.78e-17!73;UBERON:0005743!2.78e-17!73;UBERON:0002020!9.51e-15!34;UBERON:0002346!2.66e-14!71;UBERON:0003075!2.66e-14!71;UBERON:0007284!2.66e-14!71;UBERON:0001049!2.29e-13!52;UBERON:0005068!2.29e-13!52;UBERON:0006241!2.29e-13!52;UBERON:0007135!2.29e-13!52;UBERON:0002780!1.43e-12!39;UBERON:0001890!1.43e-12!39;UBERON:0006240!1.43e-12!39;UBERON:0003080!1.92e-12!40;UBERON:0000468!3.37e-12!333;UBERON:0002791!3.49e-12!29;UBERON:0003528!3.49e-12!29;UBERON:0001893!3.49e-12!29;UBERON:0003056!3.82e-12!49;UBERON:0000033!4.37e-12!63;UBERON:0000955!1.09e-11!50;UBERON:0006238!1.09e-11!50;UBERON:0002616!2.35e-11!49;UBERON:0000956!2.88e-10!21;UBERON:0001869!2.88e-10!21;UBERON:0000203!2.88e-10!21;UBERON:0000922!8.33e-09!328;UBERON:0002619!7.03e-08!17;UBERON:0004111!2.04e-07!122;UBERON:0000025!3.26e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.21e-18,95;UBERON:0000924,2.21e-18,95;UBERON:0006601,2.21e-18,95;UBERON:0001016,2.62e-18,75;UBERON:0001017,2.48e-17,73;UBERON:0010371,4.05e-15,73;UBERON:0010314,6.50e-15,92;UBERON:0002020,9.30e-15,34;UBERON:0002346,3.51e-14,64;UBERON:0003075,3.51e-14,64;UBERON:0007284,3.51e-14,64;UBERON:0000073,9.06e-14,54;UBERON:0001049,2.24e-13,52;UBERON:0005068,2.24e-13,52;UBERON:0006241,2.24e-13,52;UBERON:0007135,2.24e-13,52;UBERON:0002780,1.41e-12,39;UBERON:0001890,1.41e-12,39;UBERON:0006240,1.41e-12,39;UBERON:0003080,1.88e-12,40;UBERON:0003528,3.43e-12,29;UBERON:0002791,3.43e-12,29;UBERON:0001893,3.43e-12,29;UBERON:0003056,3.76e-12,49;UBERON:0000955,1.03e-11,47;UBERON:0006238,1.03e-11,47;UBERON:0002616,2.23e-11,46;UBERON:0000956,2.84e-10,21;UBERON:0001869,2.84e-10,21;UBERON:0000203,2.84e-10,21;UBERON:0000922,5.70e-10,320;UBERON:0002619,6.96e-08,17;UBERON:0004111,2.02e-07,122;UBERON:0000025,3.23e-07,114 | |||
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| |||
|short_description=p1@Trio | |||
}} |
Revision as of 03:46, 5 August 2015
Short description: | p1@Trio |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Trio_5end |
Coexpression cluster: | MCL_coexpression_mm9:959 |
Association with transcript: | 0bp_to_ENSMUST00000090247, NM_001081302, uc007vjw.1_5end |
EntrezGene: | 223435 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 6.98e-14 | 33 |
neuronal stem cell | 6.98e-14 | 33 |
neuroblast | 6.98e-14 | 33 |
electrically signaling cell | 6.98e-14 | 33 |
electrically responsive cell | 1.96e-13 | 39 |
electrically active cell | 1.96e-13 | 39 |
CNS neuron (sensu Vertebrata) | 6.71e-10 | 23 |
neuroblast (sensu Vertebrata) | 6.71e-10 | 23 |
ectodermal cell | 8.96e-10 | 44 |
neurectodermal cell | 8.96e-10 | 44 |
neural cell | 2.21e-09 | 43 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 2.21e-18 | 95 |
ectoderm | 2.21e-18 | 95 |
presumptive ectoderm | 2.21e-18 | 95 |
nervous system | 2.62e-18 | 75 |
central nervous system | 2.48e-17 | 73 |
ecto-epithelium | 4.05e-15 | 73 |
structure with developmental contribution from neural crest | 6.50e-15 | 92 |
gray matter | 9.30e-15 | 34 |
neurectoderm | 3.51e-14 | 64 |
neural plate | 3.51e-14 | 64 |
presumptive neural plate | 3.51e-14 | 64 |
regional part of nervous system | 9.06e-14 | 54 |
neural tube | 2.24e-13 | 52 |
neural rod | 2.24e-13 | 52 |
future spinal cord | 2.24e-13 | 52 |
neural keel | 2.24e-13 | 52 |
regional part of forebrain | 1.41e-12 | 39 |
forebrain | 1.41e-12 | 39 |
future forebrain | 1.41e-12 | 39 |
anterior neural tube | 1.88e-12 | 40 |
brain grey matter | 3.43e-12 | 29 |
regional part of telencephalon | 3.43e-12 | 29 |
telencephalon | 3.43e-12 | 29 |
pre-chordal neural plate | 3.76e-12 | 49 |
brain | 1.03e-11 | 47 |
future brain | 1.03e-11 | 47 |
regional part of brain | 2.23e-11 | 46 |
cerebral cortex | 2.84e-10 | 21 |
cerebral hemisphere | 2.84e-10 | 21 |
pallium | 2.84e-10 | 21 |
embryo | 5.70e-10 | 320 |
regional part of cerebral cortex | 6.96e-08 | 17 |
anatomical conduit | 2.02e-07 | 122 |
tube | 3.23e-07 | 114 |