FFCP PHASE1:Mm9::chr15:25294576..25294646,+: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=22|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr15:25294576..25294646,+|id=chr15:25294576..25294646,+|ontology_enrichment_celltype=CL:0000117!1.27e-15!23;CL:0000337!1.27e-15!23;CL:0002319!8.27e-13!43;CL:0000221!2.30e-12!44;CL:0000133!2.30e-12!44;CL:0000540!4.65e-12!33;CL:0000047!4.65e-12!33;CL:0000031!4.65e-12!33;CL:0000404!4.65e-12!33;CL:0000055!4.11e-11!50;CL:0000393!6.15e-11!39;CL:0000211!6.15e-11!39|ontology_enrichment_celltype_v019_2=CL:0000117,2.07e-16,23;CL:0000337,2.07e-16,23;CL:0002319,7.90e-13,43;CL:0000540,2.52e-12,33;CL:0000047,2.52e-12,33;CL:0000031,2.52e-12,33;CL:0000404,2.52e-12,33;CL:0000221,4.49e-12,44;CL:0000133,4.49e-12,44;CL:0000393,7.29e-11,39;CL:0000211,7.29e-11,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.55e-24!73;UBERON:0005743!2.55e-24!73;UBERON:0000073!1.86e-23!75;UBERON:0001016!1.86e-23!75;UBERON:0002346!2.77e-22!71;UBERON:0003075!2.77e-22!71;UBERON:0007284!2.77e-22!71;UBERON:0004121!6.41e-21!102;UBERON:0000924!6.41e-21!102;UBERON:0006601!6.41e-21!102;UBERON:0003056!1.15e-20!49;UBERON:0001049!1.69e-20!52;UBERON:0005068!1.69e-20!52;UBERON:0006241!1.69e-20!52;UBERON:0007135!1.69e-20!52;UBERON:0000033!1.16e-19!63;UBERON:0000955!1.49e-19!50;UBERON:0006238!1.49e-19!50;UBERON:0002616!3.80e-19!49;UBERON:0002020!1.25e-18!34;UBERON:0003080!1.16e-17!40;UBERON:0002780!2.68e-17!39;UBERON:0001890!2.68e-17!39;UBERON:0006240!2.68e-17!39;UBERON:0002791!3.11e-15!29;UBERON:0003528!3.11e-15!29;UBERON:0001893!3.11e-15!29;UBERON:0000956!3.09e-11!21;UBERON:0001869!3.09e-11!21;UBERON:0000203!3.09e-11!21;UBERON:0007811!3.85e-11!86;UBERON:0000153!9.23e-11!94;UBERON:0002619!7.82e-09!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.00e-25,73;UBERON:0002346,3.53e-24,64;UBERON:0003075,3.53e-24,64;UBERON:0007284,3.53e-24,64;UBERON:0001016,1.54e-23,75;UBERON:0000073,2.88e-23,54;UBERON:0003056,1.90e-21,49;UBERON:0004121,3.54e-21,95;UBERON:0000924,3.54e-21,95;UBERON:0006601,3.54e-21,95;UBERON:0001049,4.75e-21,52;UBERON:0005068,4.75e-21,52;UBERON:0006241,4.75e-21,52;UBERON:0007135,4.75e-21,52;UBERON:0002020,1.37e-19,34;UBERON:0010371,1.89e-19,73;UBERON:0003080,2.83e-18,40;UBERON:0000955,3.38e-18,47;UBERON:0006238,3.38e-18,47;UBERON:0002780,6.87e-18,39;UBERON:0001890,6.87e-18,39;UBERON:0006240,6.87e-18,39;UBERON:0002616,8.86e-18,46;UBERON:0003528,5.32e-16,29;UBERON:0002791,5.32e-16,29;UBERON:0001893,5.32e-16,29;UBERON:0010314,3.13e-13,92;UBERON:0000956,8.87e-12,21;UBERON:0001869,8.87e-12,21;UBERON:0000203,8.87e-12,21;UBERON:0002619,3.05e-09,17;UBERON:0002021,9.89e-07,10;UBERON:0000411,9.89e-07,10;UBERON:0001950,9.89e-07,10|phase1_expression=1.44133962394315,0,0,0,0,0.33575854382378,0,0.129123323441576,0.563154888606667,0.70219357896598,0.171217968225505,0.0797721589953364,0,0,0,0.202475267389826,0,0.315462165358238,0,0,3.57181818634493,0,0,0.159992422793407,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0.683045484958446,0.485510353031154,0.881277725829041,1.31790010585369,2.0190142737785,4.69434806608824,6.5407546914134,2.85592037554813,3.30530828426282,4.61955191363696,15.8127820801469,0.335565212115473,0,0.336093799142464,4.63066984864705,2.86533439938757,3.6097046459421,33.7868489635528,54.4860708650194,58.3124891225685,7.79342423759004,6.22506357277798,5.84934816232909,8.89979726310277,8.5257613793532,13.1824048628098,8.06858441175265,23.9523004432583,49.0071556144037,32.3900440481128,35.1350710816678,30.9215957332259,21.8033622602618,27.4118047112156,65.2645338493115,24.2254938198655,16.8547286272448,17.9719643909805,30.3338461779446,46.2927476628193,25.0038417867245,12.0048689570594,21.9477417912355,17.1134037510027,38.5963446970505,32.4607432221955,34.11109858603,1.36307147999731,0.831287161174641,0,0,0,0,0,0,0.983110940922263,2.89731548382698,5.45550609666024,4.24007489412408,0.845060518660083,10.2661181931454,10.1922095882658,0,6.27824018932521,6.84071636782766,13.6491600153991,1.25602267690966,0,0.29688427812965,5.72501578328248,4.26251669636998,4.61230994512117,3.01445281105245,2.3517741427141,0.753999547978053,0.741584903203122,0,0,1.29413479957927,0.662524555381181,2.42437626567611,0,0.585561594023094,1.04723353406728,1.02182822083437,0.239630249011841,0,0,7.9389038884556,3.20250421973039,38.3245773944236,16.8609590586508,28.1287003063364,9.55825004973976,14.4394724130304,6.72139801412087,2.48813941220186,5.30717792710717,2.94618598241064,10.4096354370163,5.9774547152703,9.36323074987816,10.5493372485001,8.43652589476465,9.35230158079403,14.1489604085191,5.69147415625834,3.23351989399263,3.21480336285293,3.51902248327898,4.82230611340665,5.00485048606076,0.348252166522167,3.08673204611915,5.17489093728082,0.702213187313235,0,0,0.621377317606506,1.87620847984877,1.44049649168812,1.18372367792605,0.393528463494808,0.925602677324269,0.465067889500816,1.60964040839772,0.233530684734339,0.329119699826961,0.164167464079095,0.162137619091711,0.146199987425332,0.6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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr15:25294576..25294646,+ | |||
|description=CAGE_peak_at_chr15:25294576..25294646,+ | |||
|id=chr15:25294576..25294646,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.27e-15!23;CL:0000337!1.27e-15!23;CL:0002319!8.27e-13!43;CL:0000221!2.30e-12!44;CL:0000133!2.30e-12!44;CL:0000540!4.65e-12!33;CL:0000047!4.65e-12!33;CL:0000031!4.65e-12!33;CL:0000404!4.65e-12!33;CL:0000055!4.11e-11!50;CL:0000393!6.15e-11!39;CL:0000211!6.15e-11!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.07e-16,23;CL:0000337,2.07e-16,23;CL:0002319,7.90e-13,43;CL:0000540,2.52e-12,33;CL:0000047,2.52e-12,33;CL:0000031,2.52e-12,33;CL:0000404,2.52e-12,33;CL:0000221,4.49e-12,44;CL:0000133,4.49e-12,44;CL:0000393,7.29e-11,39;CL:0000211,7.29e-11,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.55e-24!73;UBERON:0005743!2.55e-24!73;UBERON:0000073!1.86e-23!75;UBERON:0001016!1.86e-23!75;UBERON:0002346!2.77e-22!71;UBERON:0003075!2.77e-22!71;UBERON:0007284!2.77e-22!71;UBERON:0004121!6.41e-21!102;UBERON:0000924!6.41e-21!102;UBERON:0006601!6.41e-21!102;UBERON:0003056!1.15e-20!49;UBERON:0001049!1.69e-20!52;UBERON:0005068!1.69e-20!52;UBERON:0006241!1.69e-20!52;UBERON:0007135!1.69e-20!52;UBERON:0000033!1.16e-19!63;UBERON:0000955!1.49e-19!50;UBERON:0006238!1.49e-19!50;UBERON:0002616!3.80e-19!49;UBERON:0002020!1.25e-18!34;UBERON:0003080!1.16e-17!40;UBERON:0002780!2.68e-17!39;UBERON:0001890!2.68e-17!39;UBERON:0006240!2.68e-17!39;UBERON:0002791!3.11e-15!29;UBERON:0003528!3.11e-15!29;UBERON:0001893!3.11e-15!29;UBERON:0000956!3.09e-11!21;UBERON:0001869!3.09e-11!21;UBERON:0000203!3.09e-11!21;UBERON:0007811!3.85e-11!86;UBERON:0000153!9.23e-11!94;UBERON:0002619!7.82e-09!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.00e-25,73;UBERON:0002346,3.53e-24,64;UBERON:0003075,3.53e-24,64;UBERON:0007284,3.53e-24,64;UBERON:0001016,1.54e-23,75;UBERON:0000073,2.88e-23,54;UBERON:0003056,1.90e-21,49;UBERON:0004121,3.54e-21,95;UBERON:0000924,3.54e-21,95;UBERON:0006601,3.54e-21,95;UBERON:0001049,4.75e-21,52;UBERON:0005068,4.75e-21,52;UBERON:0006241,4.75e-21,52;UBERON:0007135,4.75e-21,52;UBERON:0002020,1.37e-19,34;UBERON:0010371,1.89e-19,73;UBERON:0003080,2.83e-18,40;UBERON:0000955,3.38e-18,47;UBERON:0006238,3.38e-18,47;UBERON:0002780,6.87e-18,39;UBERON:0001890,6.87e-18,39;UBERON:0006240,6.87e-18,39;UBERON:0002616,8.86e-18,46;UBERON:0003528,5.32e-16,29;UBERON:0002791,5.32e-16,29;UBERON:0001893,5.32e-16,29;UBERON:0010314,3.13e-13,92;UBERON:0000956,8.87e-12,21;UBERON:0001869,8.87e-12,21;UBERON:0000203,8.87e-12,21;UBERON:0002619,3.05e-09,17;UBERON:0002021,9.89e-07,10;UBERON:0000411,9.89e-07,10;UBERON:0001950,9.89e-07,10 | |||
|phase1_expression=1.44133962394315,0,0,0,0,0.33575854382378,0,0.129123323441576,0.563154888606667,0.70219357896598,0.171217968225505,0.0797721589953364,0,0,0,0.202475267389826,0,0.315462165358238,0,0,3.57181818634493,0,0,0.159992422793407,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0.683045484958446,0.485510353031154,0.881277725829041,1.31790010585369,2.0190142737785,4.69434806608824,6.5407546914134,2.85592037554813,3.30530828426282,4.61955191363696,15.8127820801469,0.335565212115473,0,0.336093799142464,4.63066984864705,2.86533439938757,3.6097046459421,33.7868489635528,54.4860708650194,58.3124891225685,7.79342423759004,6.22506357277798,5.84934816232909,8.89979726310277,8.5257613793532,13.1824048628098,8.06858441175265,23.9523004432583,49.0071556144037,32.3900440481128,35.1350710816678,30.9215957332259,21.8033622602618,27.4118047112156,65.2645338493115,24.2254938198655,16.8547286272448,17.9719643909805,30.3338461779446,46.2927476628193,25.0038417867245,12.0048689570594,21.9477417912355,17.1134037510027,38.5963446970505,32.4607432221955,34.11109858603,1.36307147999731,0.831287161174641,0,0,0,0,0,0,0.983110940922263,2.89731548382698,5.45550609666024,4.24007489412408,0.845060518660083,10.2661181931454,10.1922095882658,0,6.27824018932521,6.84071636782766,13.6491600153991,1.25602267690966,0,0.29688427812965,5.72501578328248,4.26251669636998,4.61230994512117,3.01445281105245,2.3517741427141,0.753999547978053,0.741584903203122,0,0,1.29413479957927,0.662524555381181,2.42437626567611,0,0.585561594023094,1.04723353406728,1.02182822083437,0.239630249011841,0,0,7.9389038884556,3.20250421973039,38.3245773944236,16.8609590586508,28.1287003063364,9.55825004973976,14.4394724130304,6.72139801412087,2.48813941220186,5.30717792710717,2.94618598241064,10.4096354370163,5.9774547152703,9.36323074987816,10.5493372485001,8.43652589476465,9.35230158079403,14.1489604085191,5.69147415625834,3.23351989399263,3.21480336285293,3.51902248327898,4.82230611340665,5.00485048606076,0.348252166522167,3.08673204611915,5.17489093728082,0.702213187313235,0,0,0.621377317606506,1.87620847984877,1.44049649168812,1.18372367792605,0.393528463494808,0.925602677324269,0.465067889500816,1.60964040839772,0.233530684734339,0.329119699826961,0.164167464079095,0.162137619091711,0.146199987425332,0.658650345873152,0.268412837520744,13.4585567081041,20.5809224758569,0,0,5.75878276445132,6.0381534683714,2.06187938115349,0.80673409849337,1.55664630691409,0.760902504450237,0.474529061544512,1.15289268306808,0.754005626400808,0.397912944082302,0.38992817423824,0,0,0.796565093017469,1.13800740571849,3.88444942873078,2.25415471346161,3.86937522906097,3.49114476901726,2.31448205638051,2.08680572510049,0.147610147979602,0.31399745568275,0.123397163921801,0,0.166845105716094,0.196558995113203,0.224862112384854,0.202860121388503,0,0.763877555344259,1.15078454980324,0,0.549122826376163,0,1.11642284300551,0.624075346229121,1.01031551178845,0.538192240565737,0.964887042726734,0.369506380333209,4.73728529426212,2.77040459951444,4.2436271443797,3.28566347603903,0.670025029767263,0,0.975668239288994,0.630540576424764,1.7717175171902,1.59454768657487,0.327726629431476,1.38147985492716,0.867894351489069,6.03165135757089,3.26343410291226,0,0.551873492609465,5.61927064957272,9.49414661396846,6.39346286969034,0,2.52406575533005,2.73307121007647,4.30846795465598,1.67278158566786,1.78238939265915,2.83076530788832,2.42886421004937,2.92255857911312,0.790575555893047,8.35435422696698,0.425820255624806,6.23229612835393,5.37526965866801,0.659880491890142,0,4.85561272309963,4.53485335447127,3.39489143560617,1.77181135728464,2.76691633149535,1.80899805217755,3.27180356529755,3.92147116223193,0.316036757935816,0,0,0.680879211507576,12.6042765821917,6.85601024048599,6.00143698088458,3.90148514013002,7.84822797449111,7.56925494769756,6.69822888052118,6.33613611772018,13.9809166770121,1.54369878638473,0.49465875882444,1.61464426695906,1.56813604813205,2.626191568069,1.80554989719567,0.291480836629851,2.22510362412612,0.512612642393558,5.15967169908056,2.77791791054568,0.565105371014073,0,1.37266903923914,0.849892149969277,0.419854356970974,0.690999869022119,0,2.21435195506795,1.62655573701479,3.24016022465404,3.76358932826044,3.71216358368502,3.37160865962052,1.65306911450672,3.92633912976044,0.518459893167171,0,1.69107881605257,1.64468200648377,3.14371131868485,1.36115831840833,3.35815541042101,1.85851738039856,1.05621514781179,4.6873578543822,11.8491059201053,6.52277126230216,2.59227005632079,0,4.25722952109345,2.67048488628551,1.81889152168913,0.716106782669926,0.198681354781265,0.480781798079875,0.295379054349154,0.605798699688886,0.762068066549998,0.705783295957884,1.16949456887703,1.44317762460494,0.818138315270983,0,3.10780334723691,5.83140067961592,4.7007692581942,1.73870634628971,2.25218970541418,0.36630324853453,1.50057865355346,0,15.2482997506608,17.0320337507655,19.4784474569395,36.6047278392055,18.4972280338073,21.9064230243013,10.8003600037089,16.6618845192962,9.0628481796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| |||
|short_description=p@chr15:25294576..25294646,+ | |||
}} |
Latest revision as of 02:57, 5 August 2015
Short description: | p@chr15:25294576..25294646, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr15:25294576..25294646, + |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.07e-16 | 23 |
neuroblast (sensu Vertebrata) | 2.07e-16 | 23 |
neural cell | 7.90e-13 | 43 |
neuron | 2.52e-12 | 33 |
neuronal stem cell | 2.52e-12 | 33 |
neuroblast | 2.52e-12 | 33 |
electrically signaling cell | 2.52e-12 | 33 |
ectodermal cell | 4.49e-12 | 44 |
neurectodermal cell | 4.49e-12 | 44 |
electrically responsive cell | 7.29e-11 | 39 |
electrically active cell | 7.29e-11 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 9.00e-25 | 73 |
neurectoderm | 3.53e-24 | 64 |
neural plate | 3.53e-24 | 64 |
presumptive neural plate | 3.53e-24 | 64 |
nervous system | 1.54e-23 | 75 |
regional part of nervous system | 2.88e-23 | 54 |
pre-chordal neural plate | 1.90e-21 | 49 |
ectoderm-derived structure | 3.54e-21 | 95 |
ectoderm | 3.54e-21 | 95 |
presumptive ectoderm | 3.54e-21 | 95 |
neural tube | 4.75e-21 | 52 |
neural rod | 4.75e-21 | 52 |
future spinal cord | 4.75e-21 | 52 |
neural keel | 4.75e-21 | 52 |
gray matter | 1.37e-19 | 34 |
ecto-epithelium | 1.89e-19 | 73 |
anterior neural tube | 2.83e-18 | 40 |
brain | 3.38e-18 | 47 |
future brain | 3.38e-18 | 47 |
regional part of forebrain | 6.87e-18 | 39 |
forebrain | 6.87e-18 | 39 |
future forebrain | 6.87e-18 | 39 |
regional part of brain | 8.86e-18 | 46 |
brain grey matter | 5.32e-16 | 29 |
regional part of telencephalon | 5.32e-16 | 29 |
telencephalon | 5.32e-16 | 29 |
structure with developmental contribution from neural crest | 3.13e-13 | 92 |
cerebral cortex | 8.87e-12 | 21 |
cerebral hemisphere | 8.87e-12 | 21 |
pallium | 8.87e-12 | 21 |
regional part of cerebral cortex | 3.05e-09 | 17 |
occipital lobe | 9.89e-07 | 10 |
visual cortex | 9.89e-07 | 10 |
neocortex | 9.89e-07 | 10 |