FFCP PHASE1:Mm9::chr12:103981909..103981921,+: Difference between revisions
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{{FFCP|EntrezGene=320351|HGNC=|UniProt=Q8BH26|association_with_transcript=-28bp_to_uc007oul.1_5end|description=CAGE_peak_3_at_D230037D09Rik_5end|id=chr12:103981909..103981921,+|ontology_enrichment_celltype=CL:0000540!2.66e-08!33;CL:0000047!2.66e-08!33;CL:0000031!2.66e-08!33;CL:0000404!2.66e-08!33;CL:0000393!3.02e-07!39;CL:0000211!3.02e-07!39|ontology_enrichment_celltype_v019_2=CL:0000540,6.44e-08,33;CL:0000047,6.44e-08,33;CL:0000031,6.44e-08,33;CL:0000404,6.44e-08,33;CL:0000117,1.28e-07,23;CL:0000337,1.28e-07,23;CL:0000393,3.30e-07,39;CL:0000211,3.30e-07,39;CL:0000034,4.58e-07,97;CL:0002319,4.75e-07,43;CL:0000221,9.90e-07,44;CL:0000133,9.90e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!1.85e-10!34;UBERON:0002791!5.82e-10!29;UBERON:0003528!5.82e-10!29;UBERON:0001893!5.82e-10!29;UBERON:0000073!7.87e-10!75;UBERON:0001016!7.87e-10!75;UBERON:0001017!6.34e-09!73;UBERON:0005743!6.34e-09!73;UBERON:0004121!9.33e-08!102;UBERON:0000924!9.33e-08!102;UBERON:0006601!9.33e-08!102;UBERON:0000956!1.94e-07!21;UBERON:0001869!1.94e-07!21;UBERON:0000203!1.94e-07!21;UBERON:0002780!3.96e-07!39;UBERON:0001890!3.96e-07!39;UBERON:0006240!3.96e-07!39;UBERON:0003056!5.73e-07!49;UBERON:0003080!6.14e-07!40;UBERON:0000033!9.01e-07!63;UBERON:0000955!9.57e-07!50;UBERON:0006238!9.57e-07!50|ontology_enrichment_uberon_v019_2=UBERON:0002020,2.51e-14,34;UBERON:0003528,7.65e-13,29;UBERON:0002791,7.65e-13,29;UBERON:0001893,7.65e-13,29;UBERON:0001016,7.99e-12,75;UBERON:0000956,1.07e-10,21;UBERON:0001869,1.07e-10,21;UBERON:0000203,1.07e-10,21;UBERON:0001017,1.58e-10,73;UBERON:0000073,2.17e-10,54;UBERON:0002780,2.47e-10,39;UBERON:0001890,2.47e-10,39;UBERON:0006240,2.47e-10,39;UBERON:0003080,7.26e-10,40;UBERON:0001049,2.06e-09,52;UBERON:0005068,2.06e-09,52;UBERON:0006241,2.06e-09,52;UBERON:0007135,2.06e-09,52;UBERON:0004121,2.23e-09,95;UBERON:0000924,2.23e-09,95;UBERON:0006601,2.23e-09,95;UBERON:0002346,5.82e-09,64;UBERON:0003075,5.82e-09,64;UBERON:0007284,5.82e-09,64;UBERON:0003056,2.38e-08,49;UBERON:0002616,2.42e-08,46;UBERON:0000955,5.43e-08,47;UBERON:0006238,5.43e-08,47;UBERON:0002619,5.46e-08,17;UBERON:0010371,8.61e-08,73;UBERON:0010314,7.17e-07,92|phase1_expression=1.12104192973356,0,0.454999239389536,2.11724947914781,0.500895729946347,0.671517087647559,0.467225281191051,1.29123323441576,1.68946466582,2.34064526321993,0.856089841127525,1.19658238493005,0.342401459862411,1.39872643870396,0,0,0.699561878128147,0.946386496074713,0.959801035240171,0.42438965179803,0.425216450755349,0.297872853602656,0.783599367416806,0.47997726838022,0.68822784320151,1.14846392823004,0.430761996159075,0.430942465371778,0.570070258369122,0.756090389279792,0,0.635030673459631,0.61506478758457,0,0,0.332469290716985,0.204169356262369,0.418531630736908,2.3440060335714,1.57057123192139,2.94115744015507,0.683045484958446,2.91306211818692,1.00717454380462,0.506884656097573,0.183546752161682,0,0,0.659058548203415,0.58328969722285,0.55994568650145,1.43752564364972,1.67782606057736,0,0.672187598284928,0.514518872071894,0.573066879877513,2.06268836910977,1.01158230429799,2.11596391708813,0.633831403506179,0.338844532069132,0,0,0,0,0.299600110518405,0,1.8664130215526,2.02508907497536,1.05162480675691,1.14260393761521,0.220868540951614,1.22490799214954,1.82106394934649,1.83843757322004,2.20231761998777,0.893811366596314,1.0752457327937,0.923204014111357,0.548925861614458,2.6045668527838,3.07101298901519,1.68828783009504,0.916789486660861,1.47314292736834,2.13557521198654,1.1183966749518,3.63485727999283,1.81371744256285,0.289864488701678,0.860423876981386,3.39985666853875,0.539703191637817,1.29955283489534,1.79210754838934,0.702222100658759,0.681721290312231,1.03914401841148,1.06001872353102,0.563373679106722,0,0,0,0.432982082022428,0.760079596425296,0.505524445014783,0.68510327831436,1.03575153458869,1.03909497345377,0.346970653532272,0.304465478312141,0.230615497256059,0.753613202763113,0.352766121407114,0.753999547978053,1.48316980640624,0.578397427679647,1.76922110389975,0,0,0.484875253135222,0,0.878342391034642,0.41889341362691,0.510914110417183,0.239630249011841,1.19980546198682,1.39777249780371,0.599162557619291,2.28750301409313,3.01570445070875,2.9550134432687,1.53429274398198,1.24672826735736,2.27137768294861,0.305518091550949,0.373220911830279,1.26361379216837,1.89397670297827,0.780722657776222,0.459804208866946,0.720248519221397,0.60281927134286,0.544291993210623,0.768682321709099,0.749613796477831,2.06962696591213,0.431135985865684,0.378212160335639,0.527853372491847,0.876782929710299,0.556094498451196,0.348252166522167,1.23469281844766,0.398068533636986,0.702213187313235,0.772043721344145,1.98914449576915,0.207125772535502,0.703578179943289,0.36012412292203,1.18372367792605,0.196764231747404,0.462801338662135,0.232533944750408,0,1.28441876603886,1.48103864922132,1.14917224855367,0.486412857275134,1.16959989940266,0.658650345873152,0.805238512562231,1.47202963994889,1.64647379806855,1.32167513193519,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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:320351 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8BH26 | |||
|association_with_transcript=-28bp_to_uc007oul.1_5end | |||
|cluster_id=chr12:103981909..103981921,+ | |||
|description=CAGE_peak_3_at_D230037D09Rik_5end | |||
|id=chr12:103981909..103981921,+ | |||
|ontology_enrichment_celltype=CL:0000540!2.66e-08!33;CL:0000047!2.66e-08!33;CL:0000031!2.66e-08!33;CL:0000404!2.66e-08!33;CL:0000393!3.02e-07!39;CL:0000211!3.02e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,6.44e-08,33;CL:0000047,6.44e-08,33;CL:0000031,6.44e-08,33;CL:0000404,6.44e-08,33;CL:0000117,1.28e-07,23;CL:0000337,1.28e-07,23;CL:0000393,3.30e-07,39;CL:0000211,3.30e-07,39;CL:0000034,4.58e-07,97;CL:0002319,4.75e-07,43;CL:0000221,9.90e-07,44;CL:0000133,9.90e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!1.85e-10!34;UBERON:0002791!5.82e-10!29;UBERON:0003528!5.82e-10!29;UBERON:0001893!5.82e-10!29;UBERON:0000073!7.87e-10!75;UBERON:0001016!7.87e-10!75;UBERON:0001017!6.34e-09!73;UBERON:0005743!6.34e-09!73;UBERON:0004121!9.33e-08!102;UBERON:0000924!9.33e-08!102;UBERON:0006601!9.33e-08!102;UBERON:0000956!1.94e-07!21;UBERON:0001869!1.94e-07!21;UBERON:0000203!1.94e-07!21;UBERON:0002780!3.96e-07!39;UBERON:0001890!3.96e-07!39;UBERON:0006240!3.96e-07!39;UBERON:0003056!5.73e-07!49;UBERON:0003080!6.14e-07!40;UBERON:0000033!9.01e-07!63;UBERON:0000955!9.57e-07!50;UBERON:0006238!9.57e-07!50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,2.51e-14,34;UBERON:0003528,7.65e-13,29;UBERON:0002791,7.65e-13,29;UBERON:0001893,7.65e-13,29;UBERON:0001016,7.99e-12,75;UBERON:0000956,1.07e-10,21;UBERON:0001869,1.07e-10,21;UBERON:0000203,1.07e-10,21;UBERON:0001017,1.58e-10,73;UBERON:0000073,2.17e-10,54;UBERON:0002780,2.47e-10,39;UBERON:0001890,2.47e-10,39;UBERON:0006240,2.47e-10,39;UBERON:0003080,7.26e-10,40;UBERON:0001049,2.06e-09,52;UBERON:0005068,2.06e-09,52;UBERON:0006241,2.06e-09,52;UBERON:0007135,2.06e-09,52;UBERON:0004121,2.23e-09,95;UBERON:0000924,2.23e-09,95;UBERON:0006601,2.23e-09,95;UBERON:0002346,5.82e-09,64;UBERON:0003075,5.82e-09,64;UBERON:0007284,5.82e-09,64;UBERON:0003056,2.38e-08,49;UBERON:0002616,2.42e-08,46;UBERON:0000955,5.43e-08,47;UBERON:0006238,5.43e-08,47;UBERON:0002619,5.46e-08,17;UBERON:0010371,8.61e-08,73;UBERON:0010314,7.17e-07,92 | |||
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| |||
|short_description=p3@D230037D09Rik | |||
}} |
Revision as of 14:42, 4 August 2015
Short description: | p3@D230037D09Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_D230037D09Rik_5end |
Coexpression cluster: | NA |
Association with transcript: | -28bp_to_uc007oul.1_5end |
EntrezGene: | 320351 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 6.44e-08 | 33 |
neuronal stem cell | 6.44e-08 | 33 |
neuroblast | 6.44e-08 | 33 |
electrically signaling cell | 6.44e-08 | 33 |
CNS neuron (sensu Vertebrata) | 1.28e-07 | 23 |
neuroblast (sensu Vertebrata) | 1.28e-07 | 23 |
electrically responsive cell | 3.30e-07 | 39 |
electrically active cell | 3.30e-07 | 39 |
stem cell | 4.58e-07 | 97 |
neural cell | 4.75e-07 | 43 |
ectodermal cell | 9.90e-07 | 44 |
neurectodermal cell | 9.90e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
gray matter | 2.51e-14 | 34 |
brain grey matter | 7.65e-13 | 29 |
regional part of telencephalon | 7.65e-13 | 29 |
telencephalon | 7.65e-13 | 29 |
nervous system | 7.99e-12 | 75 |
cerebral cortex | 1.07e-10 | 21 |
cerebral hemisphere | 1.07e-10 | 21 |
pallium | 1.07e-10 | 21 |
central nervous system | 1.58e-10 | 73 |
regional part of nervous system | 2.17e-10 | 54 |
regional part of forebrain | 2.47e-10 | 39 |
forebrain | 2.47e-10 | 39 |
future forebrain | 2.47e-10 | 39 |
anterior neural tube | 7.26e-10 | 40 |
neural tube | 2.06e-09 | 52 |
neural rod | 2.06e-09 | 52 |
future spinal cord | 2.06e-09 | 52 |
neural keel | 2.06e-09 | 52 |
ectoderm-derived structure | 2.23e-09 | 95 |
ectoderm | 2.23e-09 | 95 |
presumptive ectoderm | 2.23e-09 | 95 |
neurectoderm | 5.82e-09 | 64 |
neural plate | 5.82e-09 | 64 |
presumptive neural plate | 5.82e-09 | 64 |
pre-chordal neural plate | 2.38e-08 | 49 |
regional part of brain | 2.42e-08 | 46 |
brain | 5.43e-08 | 47 |
future brain | 5.43e-08 | 47 |
regional part of cerebral cortex | 5.46e-08 | 17 |
ecto-epithelium | 8.61e-08 | 73 |
structure with developmental contribution from neural crest | 7.17e-07 | 92 |