FFCP PHASE1:Mm9::chr4:106323692..106323725,+: Difference between revisions
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{{FFCP|EntrezGene=230577|HGNC=|MCL_coexpression_id=255|UniProt=Q8CFI5,A8Y5T6|association_with_transcript=0bp_to_ENSMUST00000058905,ENSMUST00000106781,ENSMUST00000146966_5end|description=CAGE_peak_1_at_Pars2_5end|id=chr4:106323692..106323725,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000153!7.78e-16!94;UBERON:0007811!6.44e-15!86;UBERON:0001017!3.45e-12!73;UBERON:0005743!3.45e-12!73;UBERON:0002346!9.38e-12!71;UBERON:0003075!9.38e-12!71;UBERON:0007284!9.38e-12!71;UBERON:0003056!1.96e-11!49;UBERON:0000073!2.64e-11!75;UBERON:0001016!2.64e-11!75;UBERON:0001049!4.46e-11!52;UBERON:0005068!4.46e-11!52;UBERON:0006241!4.46e-11!52;UBERON:0007135!4.46e-11!52;UBERON:0003080!9.11e-11!40;UBERON:0002780!1.26e-10!39;UBERON:0001890!1.26e-10!39;UBERON:0006240!1.26e-10!39;UBERON:0000955!2.53e-10!50;UBERON:0006238!2.53e-10!50;UBERON:0002616!4.48e-10!49;UBERON:0000033!7.89e-10!63;UBERON:0002020!1.89e-09!34;UBERON:0004121!2.35e-09!102;UBERON:0000924!2.35e-09!102;UBERON:0006601!2.35e-09!102;UBERON:0002791!3.67e-09!29;UBERON:0003528!3.67e-09!29;UBERON:0001893!3.67e-09!29;UBERON:0000956!5.88e-07!21;UBERON:0001869!5.88e-07!21;UBERON:0000203!5.88e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.45e-12,73;UBERON:0002346,7.22e-12,64;UBERON:0003075,7.22e-12,64;UBERON:0007284,7.22e-12,64;UBERON:0003056,1.96e-11,49;UBERON:0001016,2.64e-11,75;UBERON:0000955,4.22e-11,47;UBERON:0006238,4.22e-11,47;UBERON:0001049,4.46e-11,52;UBERON:0005068,4.46e-11,52;UBERON:0006241,4.46e-11,52;UBERON:0007135,4.46e-11,52;UBERON:0002616,7.52e-11,46;UBERON:0003080,9.10e-11,40;UBERON:0002780,1.26e-10,39;UBERON:0001890,1.26e-10,39;UBERON:0006240,1.26e-10,39;UBERON:0000073,1.48e-10,54;UBERON:0002020,1.88e-09,34;UBERON:0004121,3.58e-09,95;UBERON:0000924,3.58e-09,95;UBERON:0006601,3.58e-09,95;UBERON:0003528,3.67e-09,29;UBERON:0002791,3.67e-09,29;UBERON:0001893,3.67e-09,29;UBERON:0010371,6.94e-09,73;UBERON:0010314,1.12e-07,92;UBERON:0000956,5.88e-07,21;UBERON:0001869,5.88e-07,21;UBERON:0000203,5.88e-07,21;UBERON:0005423,8.30e-07,304|phase1_expression=4.16387002472464,1.39590163055744,3.18499467572675,2.41971369045464,0.500895729946347,1.51091344720701,2.33612640595526,5.4231795845462,3.09735188733667,2.80877431586392,10.1018601253048,7.57835510455696,8.04643430676667,8.91688104673774,3.99731714178795,4.85940641735582,2.79824751251259,8.51747846467242,7.26706498110415,5.94145512517242,2.89147186513637,4.86525660884338,9.14199261986274,4.31979541542198,4.35877634027623,0.57423196411502,3.01533397311352,2.37018355954478,3.23039813075836,2.26827116783938,4.6563407237614,19.0509202037889,20.2971379902908,47.5445043046316,5.19932915552294,5.65197794218874,5.10423390655923,0.418531630736908,1.5626706890476,0.523523743973798,0.588231488031014,0,0,3.14742044938943,2.93993100536592,2.75320128242522,3.9119567217402,5.45062890951116,5.27246838562732,4.6663175777828,4.33957907038624,4.31257693094915,3.35565212115473,2.90144856804538,4.7053131879945,1.54355661621568,3.15186783932632,1.03134418455488,7.48570905180512,8.46385566835253,9.50747105259269,2.71075625655306,4.4464739805557,4.49949858640699,4.94433181283487,7.8152812644071,6.2916023208865,4.2264013585371,5.91030790158323,7.42532660824299,9.25429829946081,4.85606673486466,5.74258206474195,7.96190194897201,7.3801012684042,2.75765635983006,2.20231761998777,4.72443150915195,5.06901559745603,6.98997324970027,6.22115976496386,4.16730696445408,6.97957497503452,7.87867654044352,4.73674568108111,3.83017161115768,6.69146899755784,6.71038004971082,3.93776205332557,2.64500460373749,2.6087803983151,3.44169550792555,1.3599426674155,3.2382191498269,3.24888208723835,1.34408066129201,2.24711072210803,2.38602451609281,2.59786004602869,3.18005617059306,2.95771181531029,8.98285341900225,0,14.2213340630666,3.89683873820185,3.29367825117628,5.05524445014783,1.7127581957859,2.84831672011889,4.60170631100957,5.55153045651635,4.26251669636998,4.15107895060905,4.6724018571313,6.34979018532806,4.64966387919799,3.46072954828123,4.48258006451726,4.42305275974937,3.39710384889559,1.76673214768315,1.93950101254089,1.86391761218122,6.14839673724249,6.70229461803056,4.34276993854605,2.03685711660064,0.599902730993408,2.1601938602421,5.54225365797844,8.6925114535539,8.04187853522332,5.73620256634512,6.39288643325826,7.06479351502504,5.67844420737152,4.3790926455636,2.98576729464223,4.80173241023982,3.15662783829711,7.67710613479952,5.0578462975364,5.76198815377118,4.82255417074288,6.12328492361951,6.66191345481219,7.49613796477831,3.88055056108524,6.03590380211958,7.75334928688059,5.80638709741031,6.57587197282724,5.56094498451196,6.268538997399,3.49829631893504,5.17489093728082,2.1066395619397,1.80143534980301,1.70498099637356,4.34964122324554,4.45599513964083,4.68161359798639,4.02466050494857,4.72234156193769,3.85667782218446,5.8133486187602,5.36546802799238,5.13767506415546,4.93679549740441,2.79084688934462,2.5942019054673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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:230577 | |||
|HGNC= | |||
|MCL_coexpression_id=255 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8CFI5,uniprot:A8Y5T6 | |||
|association_with_transcript=0bp_to_ENSMUST00000058905,ENSMUST00000106781,ENSMUST00000146966_5end | |||
|cluster_id=chr4:106323692..106323725,+ | |||
|description=CAGE_peak_1_at_Pars2_5end | |||
|id=chr4:106323692..106323725,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!7.78e-16!94;UBERON:0007811!6.44e-15!86;UBERON:0001017!3.45e-12!73;UBERON:0005743!3.45e-12!73;UBERON:0002346!9.38e-12!71;UBERON:0003075!9.38e-12!71;UBERON:0007284!9.38e-12!71;UBERON:0003056!1.96e-11!49;UBERON:0000073!2.64e-11!75;UBERON:0001016!2.64e-11!75;UBERON:0001049!4.46e-11!52;UBERON:0005068!4.46e-11!52;UBERON:0006241!4.46e-11!52;UBERON:0007135!4.46e-11!52;UBERON:0003080!9.11e-11!40;UBERON:0002780!1.26e-10!39;UBERON:0001890!1.26e-10!39;UBERON:0006240!1.26e-10!39;UBERON:0000955!2.53e-10!50;UBERON:0006238!2.53e-10!50;UBERON:0002616!4.48e-10!49;UBERON:0000033!7.89e-10!63;UBERON:0002020!1.89e-09!34;UBERON:0004121!2.35e-09!102;UBERON:0000924!2.35e-09!102;UBERON:0006601!2.35e-09!102;UBERON:0002791!3.67e-09!29;UBERON:0003528!3.67e-09!29;UBERON:0001893!3.67e-09!29;UBERON:0000956!5.88e-07!21;UBERON:0001869!5.88e-07!21;UBERON:0000203!5.88e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.45e-12,73;UBERON:0002346,7.22e-12,64;UBERON:0003075,7.22e-12,64;UBERON:0007284,7.22e-12,64;UBERON:0003056,1.96e-11,49;UBERON:0001016,2.64e-11,75;UBERON:0000955,4.22e-11,47;UBERON:0006238,4.22e-11,47;UBERON:0001049,4.46e-11,52;UBERON:0005068,4.46e-11,52;UBERON:0006241,4.46e-11,52;UBERON:0007135,4.46e-11,52;UBERON:0002616,7.52e-11,46;UBERON:0003080,9.10e-11,40;UBERON:0002780,1.26e-10,39;UBERON:0001890,1.26e-10,39;UBERON:0006240,1.26e-10,39;UBERON:0000073,1.48e-10,54;UBERON:0002020,1.88e-09,34;UBERON:0004121,3.58e-09,95;UBERON:0000924,3.58e-09,95;UBERON:0006601,3.58e-09,95;UBERON:0003528,3.67e-09,29;UBERON:0002791,3.67e-09,29;UBERON:0001893,3.67e-09,29;UBERON:0010371,6.94e-09,73;UBERON:0010314,1.12e-07,92;UBERON:0000956,5.88e-07,21;UBERON:0001869,5.88e-07,21;UBERON:0000203,5.88e-07,21;UBERON:0005423,8.30e-07,304 | |||
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| |||
|short_description=p1@Pars2 | |||
}} |
Revision as of 11:52, 4 August 2015
Short description: | p1@Pars2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Pars2_5end |
Coexpression cluster: | MCL_coexpression_mm9:255 |
Association with transcript: | 0bp_to_ENSMUST00000058905, ENSMUST00000106781, ENSMUST00000146966_5end |
EntrezGene: | 230577 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.45e-12 | 73 |
neurectoderm | 7.22e-12 | 64 |
neural plate | 7.22e-12 | 64 |
presumptive neural plate | 7.22e-12 | 64 |
pre-chordal neural plate | 1.96e-11 | 49 |
nervous system | 2.64e-11 | 75 |
brain | 4.22e-11 | 47 |
future brain | 4.22e-11 | 47 |
neural tube | 4.46e-11 | 52 |
neural rod | 4.46e-11 | 52 |
future spinal cord | 4.46e-11 | 52 |
neural keel | 4.46e-11 | 52 |
regional part of brain | 7.52e-11 | 46 |
anterior neural tube | 9.10e-11 | 40 |
regional part of forebrain | 1.26e-10 | 39 |
forebrain | 1.26e-10 | 39 |
future forebrain | 1.26e-10 | 39 |
regional part of nervous system | 1.48e-10 | 54 |
gray matter | 1.88e-09 | 34 |
ectoderm-derived structure | 3.58e-09 | 95 |
ectoderm | 3.58e-09 | 95 |
presumptive ectoderm | 3.58e-09 | 95 |
brain grey matter | 3.67e-09 | 29 |
regional part of telencephalon | 3.67e-09 | 29 |
telencephalon | 3.67e-09 | 29 |
ecto-epithelium | 6.94e-09 | 73 |
structure with developmental contribution from neural crest | 1.12e-07 | 92 |
cerebral cortex | 5.88e-07 | 21 |
cerebral hemisphere | 5.88e-07 | 21 |
pallium | 5.88e-07 | 21 |
developing anatomical structure | 8.30e-07 | 304 |