FFCP PHASE1:Mm9::chr4:101180552..101180637,+: Difference between revisions
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{{FFCP|EntrezGene=72685|HGNC=|MCL_coexpression_id=1|UniProt=Q80TZ3,B1B0B8,B1AYC5|association_with_transcript=0bp_to_ENSMUST00000106929,ENSMUST00000146489,ENSMUST00000149047,NM_001164584,NM_001164585,uc008tvr.2,uc008tvs.2_5end|description=CAGE_peak_1_at_Dnajc6_5end|id=chr4:101180552..101180637,+|ontology_enrichment_celltype=CL:0000117!2.04e-10!23;CL:0000337!2.04e-10!23;CL:0000540!5.04e-08!33;CL:0000047!5.04e-08!33;CL:0000031!5.04e-08!33;CL:0000404!5.04e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,7.05e-11,23;CL:0000337,7.05e-11,23;CL:0000540,3.79e-08,33;CL:0000047,3.79e-08,33;CL:0000031,3.79e-08,33;CL:0000404,3.79e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007811!7.92e-21!86;UBERON:0000153!1.96e-18!94;UBERON:0002346!3.54e-18!71;UBERON:0003075!3.54e-18!71;UBERON:0007284!3.54e-18!71;UBERON:0000033!4.50e-18!63;UBERON:0001049!1.41e-17!52;UBERON:0005068!1.41e-17!52;UBERON:0006241!1.41e-17!52;UBERON:0007135!1.41e-17!52;UBERON:0000955!3.49e-17!50;UBERON:0006238!3.49e-17!50;UBERON:0004121!5.18e-17!102;UBERON:0000924!5.18e-17!102;UBERON:0006601!5.18e-17!102;UBERON:0002616!1.39e-16!49;UBERON:0001017!4.81e-16!73;UBERON:0005743!4.81e-16!73;UBERON:0003056!1.00e-15!49;UBERON:0000073!2.19e-15!75;UBERON:0001016!2.19e-15!75;UBERON:0002020!2.33e-14!34;UBERON:0003080!2.54e-14!40;UBERON:0002780!1.04e-13!39;UBERON:0001890!1.04e-13!39;UBERON:0006240!1.04e-13!39;UBERON:0002791!3.62e-12!29;UBERON:0003528!3.62e-12!29;UBERON:0001893!3.62e-12!29;UBERON:0000956!1.43e-08!21;UBERON:0001869!1.43e-08!21;UBERON:0000203!1.43e-08!21;UBERON:0002021!3.74e-08!10;UBERON:0000411!3.74e-08!10;UBERON:0001950!3.74e-08!10;UBERON:0002619!4.52e-07!17;UBERON:0000475!8.28e-07!200|ontology_enrichment_uberon_v019_2=UBERON:0002346,3.19e-20,64;UBERON:0003075,3.19e-20,64;UBERON:0007284,3.19e-20,64;UBERON:0000073,4.00e-20,54;UBERON:0010371,9.50e-20,73;UBERON:0001049,1.04e-18,52;UBERON:0005068,1.04e-18,52;UBERON:0006241,1.04e-18,52;UBERON:0007135,1.04e-18,52;UBERON:0004121,1.46e-18,95;UBERON:0000924,1.46e-18,95;UBERON:0006601,1.46e-18,95;UBERON:0001017,2.64e-17,73;UBERON:0001016,1.46e-16,75;UBERON:0003056,1.63e-16,49;UBERON:0000955,2.62e-16,47;UBERON:0006238,2.62e-16,47;UBERON:0002616,1.08e-15,46;UBERON:0002020,4.40e-15,34;UBERON:0003080,4.87e-15,40;UBERON:0002780,2.14e-14,39;UBERON:0001890,2.14e-14,39;UBERON:0006240,2.14e-14,39;UBERON:0003528,8.92e-13,29;UBERON:0002791,8.92e-13,29;UBERON:0001893,8.92e-13,29;UBERON:0010314,2.46e-10,92;UBERON:0000956,5.44e-09,21;UBERON:0001869,5.44e-09,21;UBERON:0000203,5.44e-09,21;UBERON:0002021,1.69e-08,10;UBERON:0000411,1.69e-08,10;UBERON:0001950,1.69e-08,10;UBERON:0002619,2.06e-07,17|phase1_expression=1.92178616525753,0.348975407639361,0.454999239389536,0,0,0,0,6.19791952519566,1.267098499365,3.97909694747389,0,0.558405112967355,4.62241970814255,8.39235863222375,12.9912807108108,10.5287139042709,16.0899231969474,0.630924330716475,0.411343300817216,0.84877930359606,37.3340043763196,0,0,0.159992422793407,0.22940928106717,0,0,0.215471232685889,0.380046838912748,0,0,0,0,0,0,0,0,2.51118978442145,0,2.09409497589519,0,2.04913645487534,0.971020706062307,0,0.101376931219515,0,0,0.218025156380447,0.219686182734472,0.194429899074283,0,0,0,2.17608642603403,1.00828139742739,0,0.85960031981627,0.515672092277442,19.4223802425214,33.8554226734101,25.9870875437533,0,1.77858959222228,0,0,0,0,0.384218305321555,8.70992743391212,12.8255641415106,11.3575479129746,24.5659846587271,28.7129103237098,9.55428233876641,6.61333750025831,4.5960939330501,181.691203648991,159.609172606485,162.669318718362,18.4640802822271,25.0676143470602,14.5855743755893,137.916401506682,95.1068810953539,113.070703354839,27.9897156199984,26.9082476710305,32.9927019110782,0.302904773332736,2.64500460373749,0.869593466105033,0,0,0.539703191637817,0,0,11.5164424508037,0,0,0,1.12674735821344,0,0,0,0.432982082022428,0.506719730950197,0,5.25245846707676,2.07150306917737,4.89859058913922,2.4287945747259,1.52232739156071,1.15307748628029,3.3158980921577,4.9387256996996,1.25666591329675,1.23597483867187,5.63937491987655,6.19227386364912,1.45590164952668,2.20841518460394,4.363877278217,1.86391761218122,139.94922097152,113.310668386079,1.27728527604296,25.520621519761,6.59893004092748,17.7898317902291,163.122006311852,119.407657335662,12.6910895633993,193.814117014388,172.607933697973,168.723892182363,130.604216769545,2.95334155165917,4.72746488318353,0.252722758433675,20.412860020988,2.47228841629137,1.83921683546778,3.06105620669094,5.27466862425003,6.87168641428411,11.1458936647819,9.46387418053261,46.3079033622838,0.431135985865684,0.945530400839096,0.879755620819744,0.43839146485515,2.78047249225598,1.0447564995665,2.26360350048738,0.796137067273973,7.72434506044558,14.6688307055388,11.9348669746149,0.207125772535502,0.234526059981096,0.540186184383045,0.946978942340841,0.196764231747404,2.00547246753592,0.697601834251224,1.3413670069981,1.16765342367169,0.658239399653922,0.492502392237286,0.324275238183423,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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:72685 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q80TZ3,uniprot:B1B0B8,uniprot:B1AYC5 | |||
|association_with_transcript=0bp_to_ENSMUST00000106929,ENSMUST00000146489,ENSMUST00000149047,NM_001164584,NM_001164585,uc008tvr.2,uc008tvs.2_5end | |||
|cluster_id=chr4:101180552..101180637,+ | |||
|description=CAGE_peak_1_at_Dnajc6_5end | |||
|id=chr4:101180552..101180637,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.04e-10!23;CL:0000337!2.04e-10!23;CL:0000540!5.04e-08!33;CL:0000047!5.04e-08!33;CL:0000031!5.04e-08!33;CL:0000404!5.04e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.05e-11,23;CL:0000337,7.05e-11,23;CL:0000540,3.79e-08,33;CL:0000047,3.79e-08,33;CL:0000031,3.79e-08,33;CL:0000404,3.79e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007811!7.92e-21!86;UBERON:0000153!1.96e-18!94;UBERON:0002346!3.54e-18!71;UBERON:0003075!3.54e-18!71;UBERON:0007284!3.54e-18!71;UBERON:0000033!4.50e-18!63;UBERON:0001049!1.41e-17!52;UBERON:0005068!1.41e-17!52;UBERON:0006241!1.41e-17!52;UBERON:0007135!1.41e-17!52;UBERON:0000955!3.49e-17!50;UBERON:0006238!3.49e-17!50;UBERON:0004121!5.18e-17!102;UBERON:0000924!5.18e-17!102;UBERON:0006601!5.18e-17!102;UBERON:0002616!1.39e-16!49;UBERON:0001017!4.81e-16!73;UBERON:0005743!4.81e-16!73;UBERON:0003056!1.00e-15!49;UBERON:0000073!2.19e-15!75;UBERON:0001016!2.19e-15!75;UBERON:0002020!2.33e-14!34;UBERON:0003080!2.54e-14!40;UBERON:0002780!1.04e-13!39;UBERON:0001890!1.04e-13!39;UBERON:0006240!1.04e-13!39;UBERON:0002791!3.62e-12!29;UBERON:0003528!3.62e-12!29;UBERON:0001893!3.62e-12!29;UBERON:0000956!1.43e-08!21;UBERON:0001869!1.43e-08!21;UBERON:0000203!1.43e-08!21;UBERON:0002021!3.74e-08!10;UBERON:0000411!3.74e-08!10;UBERON:0001950!3.74e-08!10;UBERON:0002619!4.52e-07!17;UBERON:0000475!8.28e-07!200 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,3.19e-20,64;UBERON:0003075,3.19e-20,64;UBERON:0007284,3.19e-20,64;UBERON:0000073,4.00e-20,54;UBERON:0010371,9.50e-20,73;UBERON:0001049,1.04e-18,52;UBERON:0005068,1.04e-18,52;UBERON:0006241,1.04e-18,52;UBERON:0007135,1.04e-18,52;UBERON:0004121,1.46e-18,95;UBERON:0000924,1.46e-18,95;UBERON:0006601,1.46e-18,95;UBERON:0001017,2.64e-17,73;UBERON:0001016,1.46e-16,75;UBERON:0003056,1.63e-16,49;UBERON:0000955,2.62e-16,47;UBERON:0006238,2.62e-16,47;UBERON:0002616,1.08e-15,46;UBERON:0002020,4.40e-15,34;UBERON:0003080,4.87e-15,40;UBERON:0002780,2.14e-14,39;UBERON:0001890,2.14e-14,39;UBERON:0006240,2.14e-14,39;UBERON:0003528,8.92e-13,29;UBERON:0002791,8.92e-13,29;UBERON:0001893,8.92e-13,29;UBERON:0010314,2.46e-10,92;UBERON:0000956,5.44e-09,21;UBERON:0001869,5.44e-09,21;UBERON:0000203,5.44e-09,21;UBERON:0002021,1.69e-08,10;UBERON:0000411,1.69e-08,10;UBERON:0001950,1.69e-08,10;UBERON:0002619,2.06e-07,17 | |||
|phase1_expression=1.92178616525753,0.348975407639361,0.454999239389536,0,0,0,0,6.19791952519566,1.267098499365,3.97909694747389,0,0.558405112967355,4.62241970814255,8.39235863222375,12.9912807108108,10.5287139042709,16.0899231969474,0.630924330716475,0.411343300817216,0.84877930359606,37.3340043763196,0,0,0.159992422793407,0.22940928106717,0,0,0.215471232685889,0.380046838912748,0,0,0,0,0,0,0,0,2.51118978442145,0,2.09409497589519,0,2.04913645487534,0.971020706062307,0,0.101376931219515,0,0,0.218025156380447,0.219686182734472,0.194429899074283,0,0,0,2.17608642603403,1.00828139742739,0,0.85960031981627,0.515672092277442,19.4223802425214,33.8554226734101,25.9870875437533,0,1.77858959222228,0,0,0,0,0.384218305321555,8.70992743391212,12.8255641415106,11.3575479129746,24.5659846587271,28.7129103237098,9.55428233876641,6.61333750025831,4.5960939330501,181.691203648991,159.609172606485,162.669318718362,18.4640802822271,25.0676143470602,14.5855743755893,137.916401506682,95.1068810953539,113.070703354839,27.9897156199984,26.9082476710305,32.9927019110782,0.302904773332736,2.64500460373749,0.869593466105033,0,0,0.539703191637817,0,0,11.5164424508037,0,0,0,1.12674735821344,0,0,0,0.432982082022428,0.506719730950197,0,5.25245846707676,2.07150306917737,4.89859058913922,2.4287945747259,1.52232739156071,1.15307748628029,3.3158980921577,4.9387256996996,1.25666591329675,1.23597483867187,5.63937491987655,6.19227386364912,1.45590164952668,2.20841518460394,4.363877278217,1.86391761218122,139.94922097152,113.310668386079,1.27728527604296,25.520621519761,6.59893004092748,17.7898317902291,163.122006311852,119.407657335662,12.6910895633993,193.814117014388,172.607933697973,168.723892182363,130.604216769545,2.95334155165917,4.72746488318353,0.252722758433675,20.412860020988,2.47228841629137,1.83921683546778,3.06105620669094,5.27466862425003,6.87168641428411,11.1458936647819,9.46387418053261,46.3079033622838,0.431135985865684,0.945530400839096,0.879755620819744,0.43839146485515,2.78047249225598,1.0447564995665,2.26360350048738,0.796137067273973,7.72434506044558,14.6688307055388,11.9348669746149,0.207125772535502,0.234526059981096,0.540186184383045,0.946978942340841,0.196764231747404,2.00547246753592,0.697601834251224,1.3413670069981,1.16765342367169,0.658239399653922,0.492502392237286,0.324275238183423,1.31579988682799,0.658650345873152,0.671032093801859,145.941224303504,16.5676425930648,0.660837565967596,1.05780226665418,0,0.696710015581316,1.41754207454303,1.21010114774006,1.33426826306922,0.760902504450237,0.474529061544512,1.15289268306808,0.754005626400808,0.795825888164603,0.779856348476481,0,1.29682829924817,1.1948476395262,0.189667900953082,0.913988100877831,0,0.407302655690628,0.581857461502877,0.701358198903186,2.21327879934901,3.39503340353085,4.86696056308262,3.45512058981041,0,0.333690211432188,0.393117990226406,0.224862112384854,0,0,0,0.287696137450811,1.13494658742525,0.549122826376163,0,0.372140947668503,0.624075346229121,0,0.717589654087649,0.482443521363367,1.66277871149944,0.37898282354097,0.488894929326078,1.35796068620151,0.704070744865506,1.50755631697634,0,0.585400943573396,0.630540576424764,0.8858587585951,0.478364305972461,2.62181303545181,0.345369963731791,1.15719246865209,0,0,1.96705709207614,3.86311444826625,151.880858128451,152.257980883272,0,0.252470927204373,1.57754109708128,3.90438744296638,5.17016154558717,0.716906393857656,1.78238939265915,1.41538265394416,1.21443210502468,3.21481443702443,1.97643888973262,144.273271073391,2.55492153374884,3.20518086601059,1.62886959353576,2.14461159864296,6.63725691699814,1.21390318077491,3.32555912661226,8.86443874852721,5.31543407185391,4.61152721915891,1.80899805217755,2.18120237686503,5.70395805415554,9.7971394960103,4.21674434299995,4.12542172992747,41.1931922962083,1.62054984628179,1.29358683782755,2.14337035031592,6.91626911204867,5.52943334566419,8.06290200950393,7.91608867697958,0.23467170806371,0.21183207086382,2.20528398054962,9.0687439117814,4.19807509409354,2.65376869683886,4.05865969610664,3.77524069413641,0.291480836629851,125.347504159105,9.91051108627546,1.23832120777933,0.925972636848558,7.15800136617826,10.1153728513559,6.17701067657611,41.6447153484946,34.2881058192962,33.3061936868661,2.86401185404534,0.949007980743406,3.45643094115643,1.08005340821801,2.09088296014469,1.31017538247707,3.64133735239016,1.81837602595739,1.04702376793612,0.518459893167171,1.86401793926078,0,0.448549638131936,0.330916980914195,0.777804753376191,0.516639293910924,0.168956125490778,1.76035857968631,0.781226309063701,0.314578033277133,0.241584120826006,0,54.3539127480467,5.27085559754427,18.0771284610096,23.5156689589809,27.2120577414572,40.530996375378,25.8420216467933,30.1286635436138,34.1266600824739,40.0847803005299,41.2379097209678,44.8306251402861,51.4733352775763,65.2173114173155,5.66825959038028,0,0.0897138566094757,0,6.37525660306228,1.31377732815827,1.09890974560359,4.71610433973945,0,188.6271154341,212.209934029809,193.065788029077,171.509475979,190.4529404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| |||
|short_description=p1@Dnajc6 | |||
}} |
Revision as of 10:48, 4 August 2015
Short description: | p1@Dnajc6 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Dnajc6_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000106929, ENSMUST00000146489, ENSMUST00000149047, NM_001164584, NM_001164585, uc008tvr.2, uc008tvs.2_5end |
EntrezGene: | 72685 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 7.05e-11 | 23 |
neuroblast (sensu Vertebrata) | 7.05e-11 | 23 |
neuron | 3.79e-08 | 33 |
neuronal stem cell | 3.79e-08 | 33 |
neuroblast | 3.79e-08 | 33 |
electrically signaling cell | 3.79e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 3.19e-20 | 64 |
neural plate | 3.19e-20 | 64 |
presumptive neural plate | 3.19e-20 | 64 |
regional part of nervous system | 4.00e-20 | 54 |
ecto-epithelium | 9.50e-20 | 73 |
neural tube | 1.04e-18 | 52 |
neural rod | 1.04e-18 | 52 |
future spinal cord | 1.04e-18 | 52 |
neural keel | 1.04e-18 | 52 |
ectoderm-derived structure | 1.46e-18 | 95 |
ectoderm | 1.46e-18 | 95 |
presumptive ectoderm | 1.46e-18 | 95 |
central nervous system | 2.64e-17 | 73 |
nervous system | 1.46e-16 | 75 |
pre-chordal neural plate | 1.63e-16 | 49 |
brain | 2.62e-16 | 47 |
future brain | 2.62e-16 | 47 |
regional part of brain | 1.08e-15 | 46 |
gray matter | 4.40e-15 | 34 |
anterior neural tube | 4.87e-15 | 40 |
regional part of forebrain | 2.14e-14 | 39 |
forebrain | 2.14e-14 | 39 |
future forebrain | 2.14e-14 | 39 |
brain grey matter | 8.92e-13 | 29 |
regional part of telencephalon | 8.92e-13 | 29 |
telencephalon | 8.92e-13 | 29 |
structure with developmental contribution from neural crest | 2.46e-10 | 92 |
cerebral cortex | 5.44e-09 | 21 |
cerebral hemisphere | 5.44e-09 | 21 |
pallium | 5.44e-09 | 21 |
occipital lobe | 1.69e-08 | 10 |
visual cortex | 1.69e-08 | 10 |
neocortex | 1.69e-08 | 10 |
regional part of cerebral cortex | 2.06e-07 | 17 |