FFCP PHASE1:Mm9::chr9:103014424..103014479,+: Difference between revisions
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{{FFCP|EntrezGene=270192|HGNC=|MCL_coexpression_id=1|UniProt=P61294,Q0PD53,Q0PD54|association_with_transcript=20bp_to_ENSMUST00000035155,NM_173781,uc009rgf.1_5end|description=CAGE_peak_2_at_Rab6b_5end|id=chr9:103014424..103014479,+|ontology_enrichment_celltype=CL:0000540!1.40e-11!33;CL:0000047!1.40e-11!33;CL:0000031!1.40e-11!33;CL:0000404!1.40e-11!33;CL:0000117!1.57e-11!23;CL:0000337!1.57e-11!23;CL:0000393!1.99e-07!39;CL:0000211!1.99e-07!39;CL:0000221!6.82e-07!44;CL:0000133!6.82e-07!44;CL:0002319!7.24e-07!43|ontology_enrichment_celltype_v019_2=CL:0000540,4.32e-12,33;CL:0000047,4.32e-12,33;CL:0000031,4.32e-12,33;CL:0000404,4.32e-12,33;CL:0000117,4.88e-12,23;CL:0000337,4.88e-12,23;CL:0000393,8.89e-08,39;CL:0000211,8.89e-08,39;CL:0000221,7.37e-07,44;CL:0000133,7.37e-07,44;CL:0002319,7.88e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!7.53e-23!71;UBERON:0003075!7.53e-23!71;UBERON:0007284!7.53e-23!71;UBERON:0000073!2.37e-20!75;UBERON:0001016!2.37e-20!75;UBERON:0004121!2.45e-20!102;UBERON:0000924!2.45e-20!102;UBERON:0006601!2.45e-20!102;UBERON:0001017!3.02e-20!73;UBERON:0005743!3.02e-20!73;UBERON:0000033!2.47e-18!63;UBERON:0001049!4.99e-18!52;UBERON:0005068!4.99e-18!52;UBERON:0006241!4.99e-18!52;UBERON:0007135!4.99e-18!52;UBERON:0000955!1.04e-16!50;UBERON:0006238!1.04e-16!50;UBERON:0003056!1.20e-16!49;UBERON:0002616!3.95e-16!49;UBERON:0002020!6.14e-15!34;UBERON:0003080!1.16e-13!40;UBERON:0007811!2.38e-13!86;UBERON:0002780!5.10e-13!39;UBERON:0001890!5.10e-13!39;UBERON:0006240!5.10e-13!39;UBERON:0002791!6.43e-12!29;UBERON:0003528!6.43e-12!29;UBERON:0001893!6.43e-12!29;UBERON:0000153!1.01e-10!94;UBERON:0000956!9.36e-08!21;UBERON:0001869!9.36e-08!21;UBERON:0000203!9.36e-08!21;UBERON:0002021!3.32e-07!10;UBERON:0000411!3.32e-07!10;UBERON:0001950!3.32e-07!10;UBERON:0002619!6.41e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0002346,4.09e-23,64;UBERON:0003075,4.09e-23,64;UBERON:0007284,4.09e-23,64;UBERON:0001016,7.48e-21,75;UBERON:0001017,9.76e-21,73;UBERON:0000073,3.24e-20,54;UBERON:0001049,6.01e-19,52;UBERON:0005068,6.01e-19,52;UBERON:0006241,6.01e-19,52;UBERON:0007135,6.01e-19,52;UBERON:0004121,1.21e-18,95;UBERON:0000924,1.21e-18,95;UBERON:0006601,1.21e-18,95;UBERON:0003056,1.60e-17,49;UBERON:0010371,1.72e-17,73;UBERON:0002020,9.81e-16,34;UBERON:0000955,1.16e-15,47;UBERON:0006238,1.16e-15,47;UBERON:0002616,4.54e-15,46;UBERON:0003080,2.23e-14,40;UBERON:0002780,1.06e-13,39;UBERON:0001890,1.06e-13,39;UBERON:0006240,1.06e-13,39;UBERON:0010314,7.33e-13,92;UBERON:0003528,1.48e-12,29;UBERON:0002791,1.48e-12,29;UBERON:0001893,1.48e-12,29;UBERON:0000956,3.59e-08,21;UBERON:0001869,3.59e-08,21;UBERON:0000203,3.59e-08,21;UBERON:0002021,1.71e-07,10;UBERON:0000411,1.71e-07,10;UBERON:0001950,1.71e-07,10;UBERON:0002619,2.69e-07,17|phase1_expression=3.52327463630547,0,0,0,0,0,0,0,4.36445038670167,0.234064526321993,2.05461561870606,0.159544317990673,3.93761678841773,0.0874204024189974,0,0.202475267389826,0,0.630924330716475,0.274228867211478,0.42438965179803,12.6714502325094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.629484089877886,0.304130793658544,0.183546752161682,0,0.436050312760893,0.219686182734472,0,0.419959264876088,0,0,8.70434570413613,2.35265659399725,0,0,0,37.6308617198852,40.2033144246745,41.1990412279016,0,0,0,0,0,0.898800331555214,0.384218305321555,5.08079100311541,5.8052553482627,4.83747411108179,96.5500327284856,79.2918062016293,8.81933754347669,9.29701068876893,11.9498442259303,60.5637345496638,91.4241340689944,94.9288375523585,41.9398394982016,53.6117591510121,39.5894161623138,75.6585927293742,55.7134983931363,57.910535907411,78.0765751505219,78.3044244395066,63.1894121347769,2.95332153999418,5.7434385681157,0.579728977403356,0,0,1.07940638327563,0,0,4.35377702408431,4.26075806445144,3.11743205523443,3.5333957451034,3.94361575374705,1.28326477414318,0,0,0,0,0,2.74041311325744,4.91981978929626,2.07818994690755,4.51061849591953,12.7875500891099,9.4552353874984,8.74191315205211,11.7588707135705,0.502666365318702,10.1349936771093,4.04878199375753,0.884610551949874,0.323533699894818,0.441683036920787,0,1.86391761218122,35.7192572354088,46.0782754989601,1.27728527604296,0.359445373517761,0,0,104.553866304566,118.492656130024,23.8743269014442,120.112605252863,100.24045927349,121.348218022783,96.5335515253158,1.52759045775474,1.49288364732112,8.33985102831127,5.89237196482127,1.95180664444056,9.65588838620586,14.5850325142333,15.6733010549144,14.8999933141408,16.2704424761759,12.2749259173245,28.9747775227698,0,0.189106080167819,0,0.876782929710299,1.11218899690239,0.348252166522167,0.411564272815887,2.38841120182192,0,0,0,0.414251545071004,1.64168241986767,0.180062061461015,0.473489471170421,0.393528463494808,0.154267112887378,0.232533944750408,0.268273401399619,0.350296027101508,0.329119699826961,0.164167464079095,1.29710095273369,0.584799949701329,1.53685080703735,1.07365135008297,111.453672738987,20.4780178634776,0.660837565967596,0.528901133327089,1.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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:270192 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P61294,uniprot:Q0PD53,uniprot:Q0PD54 | |||
|association_with_transcript=20bp_to_ENSMUST00000035155,NM_173781,uc009rgf.1_5end | |||
|cluster_id=chr9:103014424..103014479,+ | |||
|description=CAGE_peak_2_at_Rab6b_5end | |||
|id=chr9:103014424..103014479,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.40e-11!33;CL:0000047!1.40e-11!33;CL:0000031!1.40e-11!33;CL:0000404!1.40e-11!33;CL:0000117!1.57e-11!23;CL:0000337!1.57e-11!23;CL:0000393!1.99e-07!39;CL:0000211!1.99e-07!39;CL:0000221!6.82e-07!44;CL:0000133!6.82e-07!44;CL:0002319!7.24e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,4.32e-12,33;CL:0000047,4.32e-12,33;CL:0000031,4.32e-12,33;CL:0000404,4.32e-12,33;CL:0000117,4.88e-12,23;CL:0000337,4.88e-12,23;CL:0000393,8.89e-08,39;CL:0000211,8.89e-08,39;CL:0000221,7.37e-07,44;CL:0000133,7.37e-07,44;CL:0002319,7.88e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!7.53e-23!71;UBERON:0003075!7.53e-23!71;UBERON:0007284!7.53e-23!71;UBERON:0000073!2.37e-20!75;UBERON:0001016!2.37e-20!75;UBERON:0004121!2.45e-20!102;UBERON:0000924!2.45e-20!102;UBERON:0006601!2.45e-20!102;UBERON:0001017!3.02e-20!73;UBERON:0005743!3.02e-20!73;UBERON:0000033!2.47e-18!63;UBERON:0001049!4.99e-18!52;UBERON:0005068!4.99e-18!52;UBERON:0006241!4.99e-18!52;UBERON:0007135!4.99e-18!52;UBERON:0000955!1.04e-16!50;UBERON:0006238!1.04e-16!50;UBERON:0003056!1.20e-16!49;UBERON:0002616!3.95e-16!49;UBERON:0002020!6.14e-15!34;UBERON:0003080!1.16e-13!40;UBERON:0007811!2.38e-13!86;UBERON:0002780!5.10e-13!39;UBERON:0001890!5.10e-13!39;UBERON:0006240!5.10e-13!39;UBERON:0002791!6.43e-12!29;UBERON:0003528!6.43e-12!29;UBERON:0001893!6.43e-12!29;UBERON:0000153!1.01e-10!94;UBERON:0000956!9.36e-08!21;UBERON:0001869!9.36e-08!21;UBERON:0000203!9.36e-08!21;UBERON:0002021!3.32e-07!10;UBERON:0000411!3.32e-07!10;UBERON:0001950!3.32e-07!10;UBERON:0002619!6.41e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,4.09e-23,64;UBERON:0003075,4.09e-23,64;UBERON:0007284,4.09e-23,64;UBERON:0001016,7.48e-21,75;UBERON:0001017,9.76e-21,73;UBERON:0000073,3.24e-20,54;UBERON:0001049,6.01e-19,52;UBERON:0005068,6.01e-19,52;UBERON:0006241,6.01e-19,52;UBERON:0007135,6.01e-19,52;UBERON:0004121,1.21e-18,95;UBERON:0000924,1.21e-18,95;UBERON:0006601,1.21e-18,95;UBERON:0003056,1.60e-17,49;UBERON:0010371,1.72e-17,73;UBERON:0002020,9.81e-16,34;UBERON:0000955,1.16e-15,47;UBERON:0006238,1.16e-15,47;UBERON:0002616,4.54e-15,46;UBERON:0003080,2.23e-14,40;UBERON:0002780,1.06e-13,39;UBERON:0001890,1.06e-13,39;UBERON:0006240,1.06e-13,39;UBERON:0010314,7.33e-13,92;UBERON:0003528,1.48e-12,29;UBERON:0002791,1.48e-12,29;UBERON:0001893,1.48e-12,29;UBERON:0000956,3.59e-08,21;UBERON:0001869,3.59e-08,21;UBERON:0000203,3.59e-08,21;UBERON:0002021,1.71e-07,10;UBERON:0000411,1.71e-07,10;UBERON:0001950,1.71e-07,10;UBERON:0002619,2.69e-07,17 | |||
|phase1_expression=3.52327463630547,0,0,0,0,0,0,0,4.36445038670167,0.234064526321993,2.05461561870606,0.159544317990673,3.93761678841773,0.0874204024189974,0,0.202475267389826,0,0.630924330716475,0.274228867211478,0.42438965179803,12.6714502325094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.629484089877886,0.304130793658544,0.183546752161682,0,0.436050312760893,0.219686182734472,0,0.419959264876088,0,0,8.70434570413613,2.35265659399725,0,0,0,37.6308617198852,40.2033144246745,41.1990412279016,0,0,0,0,0,0.898800331555214,0.384218305321555,5.08079100311541,5.8052553482627,4.83747411108179,96.5500327284856,79.2918062016293,8.81933754347669,9.29701068876893,11.9498442259303,60.5637345496638,91.4241340689944,94.9288375523585,41.9398394982016,53.6117591510121,39.5894161623138,75.6585927293742,55.7134983931363,57.910535907411,78.0765751505219,78.3044244395066,63.1894121347769,2.95332153999418,5.7434385681157,0.579728977403356,0,0,1.07940638327563,0,0,4.35377702408431,4.26075806445144,3.11743205523443,3.5333957451034,3.94361575374705,1.28326477414318,0,0,0,0,0,2.74041311325744,4.91981978929626,2.07818994690755,4.51061849591953,12.7875500891099,9.4552353874984,8.74191315205211,11.7588707135705,0.502666365318702,10.1349936771093,4.04878199375753,0.884610551949874,0.323533699894818,0.441683036920787,0,1.86391761218122,35.7192572354088,46.0782754989601,1.27728527604296,0.359445373517761,0,0,104.553866304566,118.492656130024,23.8743269014442,120.112605252863,100.24045927349,121.348218022783,96.5335515253158,1.52759045775474,1.49288364732112,8.33985102831127,5.89237196482127,1.95180664444056,9.65588838620586,14.5850325142333,15.6733010549144,14.8999933141408,16.2704424761759,12.2749259173245,28.9747775227698,0,0.189106080167819,0,0.876782929710299,1.11218899690239,0.348252166522167,0.411564272815887,2.38841120182192,0,0,0,0.414251545071004,1.64168241986767,0.180062061461015,0.473489471170421,0.393528463494808,0.154267112887378,0.232533944750408,0.268273401399619,0.350296027101508,0.329119699826961,0.164167464079095,1.29710095273369,0.584799949701329,1.53685080703735,1.07365135008297,111.453672738987,20.4780178634776,0.660837565967596,0.528901133327089,1.49301775374664,2.55460339046482,2.70621668776396,3.83198696784351,4.66993892074228,2.66315876557583,0.949058123089023,4.44687177754829,4.52403375840485,5.17286827306992,4.09424582950152,1.79763881730844,2.16138049874694,1.1948476395262,1.89667900953082,1.5994791765362,3.38123207019241,1.4255592949172,2.13347735884388,4.34842083319975,3.28829993046138,4.28069429140846,4.23896565171712,3.45512058981041,0,0,0.196558995113203,0.224862112384854,0,0,0.25462585178142,0,0.162135226775035,0,0,0,0,0,0.179397413521912,0,6.09685527549795,0.757965647081939,0.325929952884052,0.509235257325564,0.469380496577004,0.502518772325447,1.90434912708811,2.14647012643579,1.57635144106191,0.8858587585951,1.43509291791738,4.42430949732493,2.76295970985433,1.3018415272336,0,0,0,0.551873492609465,119.128537770942,103.849554320692,0.163934945376675,0.252470927204373,4.73262329124385,7.41833614163613,10.9865932843727,1.91175038362042,3.11918143715352,2.83076530788832,4.45291771842384,8.18316402151673,7.51046778098395,64.2642632843614,3.12268187458191,2.84904965867608,2.11753047159649,2.8044920905331,1.32745138339963,1.69946445308487,1.81394134178851,0.754420319023592,1.18120757152309,2.76691633149535,1.29214146584111,1.09060118843252,0.356497378384721,3.47640433729398,5.27093042874994,4.12542172992747,4.42571487479924,5.221771726908,3.10460841078611,2.35770738534752,1.77340233642274,4.8159580752559,13.4930196893739,4.56697423671899,12.2029288193129,14.4045808187398,6.61585194164886,0.65954501176592,0.161464426695906,0.542816324353403,0.477489376012546,0.164140899745061,1.1659233465194,103.281893219854,0.854354403989263,1.23832120777933,0.740778109478847,0.376736914009382,0.136694227721025,0.228778173206523,1.5298058699447,1.53946597556024,2.62579950228405,2.86401185404534,1.58167996790568,4.26970880966382,3.67218158794124,1.88179466413022,2.83871332870031,4.04593039154462,3.88471241909079,0.785267825952089,1.29614973291793,0,1.12738587736838,5.53211220362722,5.12921320417003,1.16670713006429,0.387479470433193,0.675824501963113,1.29092962510329,1.3020438484395,1.99232754408851,0.483168241652012,1.44015003128933,6.95224465381992,0.608175645870493,0.821687657318618,0.129920822977795,0.537080087002444,1.98681354781265,2.64429988943931,2.51072196196781,3.23092639834072,3.20068587950999,4.33552596088414,6.04238860586465,5.38786313185845,6.19447581562315,0.906921534460845,6.65957860122194,2.78112955489375,5.03653849092235,4.82973985080476,2.62755465631655,4.57879060668163,1.07184189539533,4.51414893631827,119.727390634818,83.318867807799,101.402505878773,75.2716938665352,56.1767666211927,64.9638751755142,54.6768225187763,62.5946472481666,58.0022283499782,66.7910802159848,10.3787347584177,13.167820822234,7.68301225893604,7.29320151204882,9.4325923182592,9.00833191405069,9.77885602327107,11.5379632053781,14.1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| |||
|short_description=p2@Rab6b | |||
}} |
Revision as of 10:47, 4 August 2015
Short description: | p2@Rab6b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Rab6b_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 20bp_to_ENSMUST00000035155, NM_173781, uc009rgf.1_5end |
EntrezGene: | 270192 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 4.32e-12 | 33 |
neuronal stem cell | 4.32e-12 | 33 |
neuroblast | 4.32e-12 | 33 |
electrically signaling cell | 4.32e-12 | 33 |
CNS neuron (sensu Vertebrata) | 4.88e-12 | 23 |
neuroblast (sensu Vertebrata) | 4.88e-12 | 23 |
electrically responsive cell | 8.89e-08 | 39 |
electrically active cell | 8.89e-08 | 39 |
ectodermal cell | 7.37e-07 | 44 |
neurectodermal cell | 7.37e-07 | 44 |
neural cell | 7.88e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 4.09e-23 | 64 |
neural plate | 4.09e-23 | 64 |
presumptive neural plate | 4.09e-23 | 64 |
nervous system | 7.48e-21 | 75 |
central nervous system | 9.76e-21 | 73 |
regional part of nervous system | 3.24e-20 | 54 |
neural tube | 6.01e-19 | 52 |
neural rod | 6.01e-19 | 52 |
future spinal cord | 6.01e-19 | 52 |
neural keel | 6.01e-19 | 52 |
ectoderm-derived structure | 1.21e-18 | 95 |
ectoderm | 1.21e-18 | 95 |
presumptive ectoderm | 1.21e-18 | 95 |
pre-chordal neural plate | 1.60e-17 | 49 |
ecto-epithelium | 1.72e-17 | 73 |
gray matter | 9.81e-16 | 34 |
brain | 1.16e-15 | 47 |
future brain | 1.16e-15 | 47 |
regional part of brain | 4.54e-15 | 46 |
anterior neural tube | 2.23e-14 | 40 |
regional part of forebrain | 1.06e-13 | 39 |
forebrain | 1.06e-13 | 39 |
future forebrain | 1.06e-13 | 39 |
structure with developmental contribution from neural crest | 7.33e-13 | 92 |
brain grey matter | 1.48e-12 | 29 |
regional part of telencephalon | 1.48e-12 | 29 |
telencephalon | 1.48e-12 | 29 |
cerebral cortex | 3.59e-08 | 21 |
cerebral hemisphere | 3.59e-08 | 21 |
pallium | 3.59e-08 | 21 |
occipital lobe | 1.71e-07 | 10 |
visual cortex | 1.71e-07 | 10 |
neocortex | 1.71e-07 | 10 |
regional part of cerebral cortex | 2.69e-07 | 17 |