FFCP PHASE1:Mm9::chr10:34002005..34002084,+: Difference between revisions
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{{FFCP|EntrezGene=22110|HGNC=|UniProt=O88852|association_with_transcript=9bp_to_ENSMUST00000061372,NM_009433,uc007eut.2_5end|description=CAGE_peak_1_at_Tspyl1_5end|id=chr10:34002005..34002084,+|ontology_enrichment_celltype=CL:0000117!2.48e-11!23;CL:0000337!2.48e-11!23;CL:0000393!1.33e-10!39;CL:0000211!1.33e-10!39;CL:0000723!1.53e-10!91;CL:0000048!1.53e-10!91;CL:0000055!1.72e-10!50;CL:0000034!4.09e-10!97;CL:0000221!3.78e-09!44;CL:0000133!3.78e-09!44;CL:0002319!6.47e-09!43;CL:0000540!8.87e-09!33;CL:0000047!8.87e-09!33;CL:0000031!8.87e-09!33;CL:0000404!8.87e-09!33;CL:0000144!2.54e-08!121;CL:0000012!2.54e-08!121;CL:0002371!3.33e-07!118|ontology_enrichment_celltype_v019_2=CL:0000117,2.48e-11,23;CL:0000337,2.48e-11,23;CL:0000393,1.33e-10,39;CL:0000211,1.33e-10,39;CL:0000723,1.53e-10,91;CL:0000048,1.53e-10,91;CL:0000034,4.09e-10,97;CL:0000221,3.78e-09,44;CL:0000133,3.78e-09,44;CL:0002319,6.47e-09,43;CL:0000540,8.87e-09,33;CL:0000047,8.87e-09,33;CL:0000031,8.87e-09,33;CL:0000404,8.87e-09,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.13e-24!73;UBERON:0005743!5.13e-24!73;UBERON:0000073!3.07e-22!75;UBERON:0001016!3.07e-22!75;UBERON:0001049!6.21e-22!52;UBERON:0005068!6.21e-22!52;UBERON:0006241!6.21e-22!52;UBERON:0007135!6.21e-22!52;UBERON:0000955!1.54e-21!50;UBERON:0006238!1.54e-21!50;UBERON:0002616!4.59e-21!49;UBERON:0000033!1.08e-18!63;UBERON:0007811!1.11e-18!86;UBERON:0002346!9.17e-18!71;UBERON:0003075!9.17e-18!71;UBERON:0007284!9.17e-18!71;UBERON:0003080!7.04e-17!40;UBERON:0000153!8.31e-17!94;UBERON:0002780!2.41e-16!39;UBERON:0001890!2.41e-16!39;UBERON:0006240!2.41e-16!39;UBERON:0002020!4.16e-16!34;UBERON:0004121!4.03e-15!102;UBERON:0000924!4.03e-15!102;UBERON:0006601!4.03e-15!102;UBERON:0003056!4.32e-15!49;UBERON:0002791!4.27e-14!29;UBERON:0003528!4.27e-14!29;UBERON:0001893!4.27e-14!29;UBERON:0000956!8.56e-10!21;UBERON:0001869!8.56e-10!21;UBERON:0000203!8.56e-10!21;UBERON:0002619!3.70e-08!17;UBERON:0000025!6.82e-08!114;UBERON:0004111!4.09e-07!122;UBERON:0000477!6.10e-07!154|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.13e-24,73;UBERON:0000073,2.68e-23,54;UBERON:0001016,3.07e-22,75;UBERON:0001049,6.21e-22,52;UBERON:0005068,6.21e-22,52;UBERON:0006241,6.21e-22,52;UBERON:0007135,6.21e-22,52;UBERON:0000955,1.16e-19,47;UBERON:0006238,1.16e-19,47;UBERON:0002616,3.40e-19,46;UBERON:0002346,5.68e-19,64;UBERON:0003075,5.68e-19,64;UBERON:0007284,5.68e-19,64;UBERON:0003080,7.04e-17,40;UBERON:0010314,9.62e-17,92;UBERON:0002780,2.41e-16,39;UBERON:0001890,2.41e-16,39;UBERON:0006240,2.41e-16,39;UBERON:0002020,4.16e-16,34;UBERON:0004121,1.21e-15,95;UBERON:0000924,1.21e-15,95;UBERON:0006601,1.21e-15,95;UBERON:0010371,2.31e-15,73;UBERON:0003056,4.32e-15,49;UBERON:0003528,4.27e-14,29;UBERON:0002791,4.27e-14,29;UBERON:0001893,4.27e-14,29;UBERON:0000956,8.56e-10,21;UBERON:0001869,8.56e-10,21;UBERON:0000203,8.56e-10,21;UBERON:0002619,3.70e-08,17;UBERON:0000025,6.82e-08,114;UBERON:0004111,4.09e-07,122|phase1_expression=60.0558176642977,27.5690572035095,21.3849642513082,20.5675663688644,32.0573267165662,17.2915650069246,17.2873354040689,75.7953908602053,38.435321147405,47.7491633696867,21.7446819646391,15.9544317990673,71.2195036513816,71.5098891787399,15.9892685671518,23.0821804824402,30.7807226376385,30.1266367917117,28.5198021899937,33.1023928402464,31.3809740657447,38.922052870747,33.6947727989227,15.6792574337539,16.2880589557691,25.8404383851759,20.6765758156356,17.2376986148711,15.0118501370535,14.8697776558359,14.6342137032501,12.065582795733,11.0711661765223,0,17.0422455653252,10.6390173029435,11.0251452381679,72.405972117485,54.693474116666,55.4935168612226,147.057872007754,87.429822074681,82.5367600152961,73.3978448797615,63.9688435995137,71.3996865908941,62.5913075478431,29.2153709549798,39.7631990749394,38.4971200167081,31.7769177089573,24.4379359420452,56.8783034535726,116.783304863826,122.338142887857,30.8711323243136,28.3668105539369,42.2851115667503,58.0648242667046,69.8268092639083,50.0726808769882,48.1159235538168,44.464739805557,46.7947852986327,42.5212535903799,45.4707273565504,45.8388169093159,49.9483796918021,48.1119801111336,50.2222090593889,48.5850660721692,54.2736870367227,56.3214779426615,41.8918533315143,57.1239007268689,32.1726575313507,69.3730050296149,78.1446509081349,78.4929384939404,55.9197859976022,72.366726089506,63.030517837368,87.1050956884309,96.7951689254489,87.5533959761122,49.4976023595762,46.6979113021058,58.5294259891444,14.4637029266382,18.4394606660557,58.5526267177389,23.2314446784974,12.2394840067395,12.4131734076698,12.9955283489534,15.2329141613094,21.3475518600263,37.8355316123288,48.5799828607365,44.8741259628132,39.5770009572472,41.0644727725817,48.4129955442627,42.6640021891999,12.7729714196616,12.1612735428047,12.6381111253696,17.127581957859,16.0541487861246,23.3054158331775,26.7167403219849,20.7036525252256,29.7493991460315,24.1156224884196,27.3981687626192,25.0076516746054,17.3036477414062,17.0627241165496,15.038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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:22110 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:O88852 | |||
|association_with_transcript=9bp_to_ENSMUST00000061372,NM_009433,uc007eut.2_5end | |||
|cluster_id=chr10:34002005..34002084,+ | |||
|description=CAGE_peak_1_at_Tspyl1_5end | |||
|id=chr10:34002005..34002084,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.48e-11!23;CL:0000337!2.48e-11!23;CL:0000393!1.33e-10!39;CL:0000211!1.33e-10!39;CL:0000723!1.53e-10!91;CL:0000048!1.53e-10!91;CL:0000055!1.72e-10!50;CL:0000034!4.09e-10!97;CL:0000221!3.78e-09!44;CL:0000133!3.78e-09!44;CL:0002319!6.47e-09!43;CL:0000540!8.87e-09!33;CL:0000047!8.87e-09!33;CL:0000031!8.87e-09!33;CL:0000404!8.87e-09!33;CL:0000144!2.54e-08!121;CL:0000012!2.54e-08!121;CL:0002371!3.33e-07!118 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.48e-11,23;CL:0000337,2.48e-11,23;CL:0000393,1.33e-10,39;CL:0000211,1.33e-10,39;CL:0000723,1.53e-10,91;CL:0000048,1.53e-10,91;CL:0000034,4.09e-10,97;CL:0000221,3.78e-09,44;CL:0000133,3.78e-09,44;CL:0002319,6.47e-09,43;CL:0000540,8.87e-09,33;CL:0000047,8.87e-09,33;CL:0000031,8.87e-09,33;CL:0000404,8.87e-09,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.13e-24!73;UBERON:0005743!5.13e-24!73;UBERON:0000073!3.07e-22!75;UBERON:0001016!3.07e-22!75;UBERON:0001049!6.21e-22!52;UBERON:0005068!6.21e-22!52;UBERON:0006241!6.21e-22!52;UBERON:0007135!6.21e-22!52;UBERON:0000955!1.54e-21!50;UBERON:0006238!1.54e-21!50;UBERON:0002616!4.59e-21!49;UBERON:0000033!1.08e-18!63;UBERON:0007811!1.11e-18!86;UBERON:0002346!9.17e-18!71;UBERON:0003075!9.17e-18!71;UBERON:0007284!9.17e-18!71;UBERON:0003080!7.04e-17!40;UBERON:0000153!8.31e-17!94;UBERON:0002780!2.41e-16!39;UBERON:0001890!2.41e-16!39;UBERON:0006240!2.41e-16!39;UBERON:0002020!4.16e-16!34;UBERON:0004121!4.03e-15!102;UBERON:0000924!4.03e-15!102;UBERON:0006601!4.03e-15!102;UBERON:0003056!4.32e-15!49;UBERON:0002791!4.27e-14!29;UBERON:0003528!4.27e-14!29;UBERON:0001893!4.27e-14!29;UBERON:0000956!8.56e-10!21;UBERON:0001869!8.56e-10!21;UBERON:0000203!8.56e-10!21;UBERON:0002619!3.70e-08!17;UBERON:0000025!6.82e-08!114;UBERON:0004111!4.09e-07!122;UBERON:0000477!6.10e-07!154 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.13e-24,73;UBERON:0000073,2.68e-23,54;UBERON:0001016,3.07e-22,75;UBERON:0001049,6.21e-22,52;UBERON:0005068,6.21e-22,52;UBERON:0006241,6.21e-22,52;UBERON:0007135,6.21e-22,52;UBERON:0000955,1.16e-19,47;UBERON:0006238,1.16e-19,47;UBERON:0002616,3.40e-19,46;UBERON:0002346,5.68e-19,64;UBERON:0003075,5.68e-19,64;UBERON:0007284,5.68e-19,64;UBERON:0003080,7.04e-17,40;UBERON:0010314,9.62e-17,92;UBERON:0002780,2.41e-16,39;UBERON:0001890,2.41e-16,39;UBERON:0006240,2.41e-16,39;UBERON:0002020,4.16e-16,34;UBERON:0004121,1.21e-15,95;UBERON:0000924,1.21e-15,95;UBERON:0006601,1.21e-15,95;UBERON:0010371,2.31e-15,73;UBERON:0003056,4.32e-15,49;UBERON:0003528,4.27e-14,29;UBERON:0002791,4.27e-14,29;UBERON:0001893,4.27e-14,29;UBERON:0000956,8.56e-10,21;UBERON:0001869,8.56e-10,21;UBERON:0000203,8.56e-10,21;UBERON:0002619,3.70e-08,17;UBERON:0000025,6.82e-08,114;UBERON:0004111,4.09e-07,122 | |||
|phase1_expression=60.0558176642977,27.5690572035095,21.3849642513082,20.5675663688644,32.0573267165662,17.2915650069246,17.2873354040689,75.7953908602053,38.435321147405,47.7491633696867,21.7446819646391,15.9544317990673,71.2195036513816,71.5098891787399,15.9892685671518,23.0821804824402,30.7807226376385,30.1266367917117,28.5198021899937,33.1023928402464,31.3809740657447,38.922052870747,33.6947727989227,15.6792574337539,16.2880589557691,25.8404383851759,20.6765758156356,17.2376986148711,15.0118501370535,14.8697776558359,14.6342137032501,12.065582795733,11.0711661765223,0,17.0422455653252,10.6390173029435,11.0251452381679,72.405972117485,54.693474116666,55.4935168612226,147.057872007754,87.429822074681,82.5367600152961,73.3978448797615,63.9688435995137,71.3996865908941,62.5913075478431,29.2153709549798,39.7631990749394,38.4971200167081,31.7769177089573,24.4379359420452,56.8783034535726,116.783304863826,122.338142887857,30.8711323243136,28.3668105539369,42.2851115667503,58.0648242667046,69.8268092639083,50.0726808769882,48.1159235538168,44.464739805557,46.7947852986327,42.5212535903799,45.4707273565504,45.8388169093159,49.9483796918021,48.1119801111336,50.2222090593889,48.5850660721692,54.2736870367227,56.3214779426615,41.8918533315143,57.1239007268689,32.1726575313507,69.3730050296149,78.1446509081349,78.4929384939404,55.9197859976022,72.366726089506,63.030517837368,87.1050956884309,96.7951689254489,87.5533959761122,49.4976023595762,46.6979113021058,58.5294259891444,14.4637029266382,18.4394606660557,58.5526267177389,23.2314446784974,12.2394840067395,12.4131734076698,12.9955283489534,15.2329141613094,21.3475518600263,37.8355316123288,48.5799828607365,44.8741259628132,39.5770009572472,41.0644727725817,48.4129955442627,42.6640021891999,12.7729714196616,12.1612735428047,12.6381111253696,17.127581957859,16.0541487861246,23.3054158331775,26.7167403219849,20.7036525252256,29.7493991460315,24.1156224884196,27.3981687626192,25.0076516746054,17.3036477414062,17.0627241165496,15.0383793831479,22.1620584427951,20.3174196983562,23.2740121504907,3.72783522436244,51.8222010710438,51.3144431692965,16.860165643767,47.0873439308267,41.3932884385451,44.9828603838649,67.555578371575,72.285095245343,44.3559862958411,81.6974304903699,79.5275072297328,58.5962285657959,68.1413304884582,33.9125081621553,22.1444407685966,22.492325500597,22.5172785798527,27.1951725792051,27.3583504275833,31.3308105861308,33.1550599238573,27.6908551545904,22.4199010498487,29.6097449608743,18.6266426932091,23.0657752438141,24.5837904218165,25.6888641279365,27.3994665534469,25.580346928755,20.1986256582857,22.8418171412817,27.0686602873151,30.8973802417823,29.5950093181922,31.8263119323064,22.9909607514407,21.5763975182609,27.7295574649963,27.4623893278844,23.4149435779411,27.7680803197281,23.950996309292,23.3397859217669,35.9637254490882,24.1902979372816,25.938459324497,22.6992666728396,28.6551975353651,20.1986106067767,29.256999289761,68.5545232319055,36.7369466194045,14.8688452342709,11.9002754998595,14.9301775374664,23.2236671860439,18.2991795077373,18.9582513145942,16.2335972006755,19.9736907418187,14.2358718463353,19.5991756121573,24.1281800448259,22.8799942847323,19.1064805376738,12.5834717211591,14.0489732418551,13.7407478545513,18.2081184914958,15.994791765362,19.1603150644237,20.5687841123767,21.1408211012712,23.565635483147,23.3342821988509,18.4512684974503,17.8978549739167,20.1137377192535,16.6013471168803,12.5133829287071,17.6903095601883,17.9889689907883,20.0831520174618,12.7823894668781,19.0969388836065,17.8371605219503,17.5106044917038,9.06052663520669,11.5014565221884,15.6299198020771,11.5453939052387,9.59799736199025,11.3020370518805,20.2626278972614,26.2349530036579,25.2023577654745,20.3706220552532,16.6350184059684,21.3568125942537,21.775813467436,26.6608877792335,33.953254727257,30.7388531007072,28.7904096543407,28.7018583583477,27.529036872244,25.2120073524208,33.9925287666552,27.142431109069,13.5976420954677,16.7199852826472,19.8674457339407,61.4908759653243,56.4960329374419,41.9673460164289,31.811336827751,23.6631164562193,18.7410597262386,26.2816545234015,18.8785350382516,20.0518806674155,21.2307398091624,30.765613327292,34.1939353756235,35.9711877931336,56.2312303738162,26.5427959339462,43.0918760874758,34.8578093016653,37.6131880377381,14.6019652173959,25.0064055239631,23.8835610002153,14.7111962209601,23.328849537581,22.1353306519628,33.0788215255323,27.6285634402904,18.1813662976208,21.4904995396355,21.0837217149998,13.4076206222643,43.9167091422387,25.3886142584147,35.314920672692,36.6516329904023,36.8867685975929,36.0305011556183,45.0864316449811,45.9742073163045,13.8456307757589,13.9809166770121,13.8932890774626,16.488625294148,20.9903754704677,17.792312853806,21.1289048885552,18.876203470682,20.1121777274597,62.6737520795523,21.5297309805294,32.8155120061524,19.6306199011894,20.3437933565066,18.0436380591753,23.1065954938588,71.7308974574069,80.0522307291324,74.7661858281933,9.54670618015114,18.663823621287,21.5518635154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| |||
|short_description=p1@Tspyl1 | |||
}} |
Revision as of 08:04, 4 August 2015
Short description: | p1@Tspyl1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Tspyl1_5end |
Coexpression cluster: | NA |
Association with transcript: | 9bp_to_ENSMUST00000061372, NM_009433, uc007eut.2_5end |
EntrezGene: | 22110 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.48e-11 | 23 |
neuroblast (sensu Vertebrata) | 2.48e-11 | 23 |
electrically responsive cell | 1.33e-10 | 39 |
electrically active cell | 1.33e-10 | 39 |
somatic stem cell | 1.53e-10 | 91 |
multi fate stem cell | 1.53e-10 | 91 |
stem cell | 4.09e-10 | 97 |
ectodermal cell | 3.78e-09 | 44 |
neurectodermal cell | 3.78e-09 | 44 |
neural cell | 6.47e-09 | 43 |
neuron | 8.87e-09 | 33 |
neuronal stem cell | 8.87e-09 | 33 |
neuroblast | 8.87e-09 | 33 |
electrically signaling cell | 8.87e-09 | 33 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.13e-24 | 73 |
regional part of nervous system | 2.68e-23 | 54 |
nervous system | 3.07e-22 | 75 |
neural tube | 6.21e-22 | 52 |
neural rod | 6.21e-22 | 52 |
future spinal cord | 6.21e-22 | 52 |
neural keel | 6.21e-22 | 52 |
brain | 1.16e-19 | 47 |
future brain | 1.16e-19 | 47 |
regional part of brain | 3.40e-19 | 46 |
neurectoderm | 5.68e-19 | 64 |
neural plate | 5.68e-19 | 64 |
presumptive neural plate | 5.68e-19 | 64 |
anterior neural tube | 7.04e-17 | 40 |
structure with developmental contribution from neural crest | 9.62e-17 | 92 |
regional part of forebrain | 2.41e-16 | 39 |
forebrain | 2.41e-16 | 39 |
future forebrain | 2.41e-16 | 39 |
gray matter | 4.16e-16 | 34 |
ectoderm-derived structure | 1.21e-15 | 95 |
ectoderm | 1.21e-15 | 95 |
presumptive ectoderm | 1.21e-15 | 95 |
ecto-epithelium | 2.31e-15 | 73 |
pre-chordal neural plate | 4.32e-15 | 49 |
brain grey matter | 4.27e-14 | 29 |
regional part of telencephalon | 4.27e-14 | 29 |
telencephalon | 4.27e-14 | 29 |
cerebral cortex | 8.56e-10 | 21 |
cerebral hemisphere | 8.56e-10 | 21 |
pallium | 8.56e-10 | 21 |
regional part of cerebral cortex | 3.70e-08 | 17 |
tube | 6.82e-08 | 114 |
anatomical conduit | 4.09e-07 | 122 |