FFCP PHASE1:Mm9::chr10:3366185..3366194,+: Difference between revisions
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{{FFCP|EntrezGene=320495|HGNC=|MCL_coexpression_id=2554|UniProt=Q5DU31|association_with_transcript=20bp_to_ENSMUST00000105617_5end|description=CAGE_peak_3_at_Ipcef1_5end|id=chr10:3366185..3366194,+|ontology_enrichment_celltype=CL:0000838!3.29e-11!12;CL:0000084!4.84e-11!11;CL:0000827!4.84e-11!11;CL:0000542!5.13e-10!13;CL:0000051!5.13e-10!13;CL:0000791!5.19e-10!9;CL:0000789!5.19e-10!9;CL:0002420!5.19e-10!9;CL:0002419!5.19e-10!9;CL:0000790!5.19e-10!9;CL:0000624!4.01e-09!8;CL:0000893!3.15e-07!6;CL:0002489!3.15e-07!6;CL:0000898!3.15e-07!6;CL:0000809!3.15e-07!6;CL:0000810!3.15e-07!6;CL:0000895!3.15e-07!6;CL:0000808!3.15e-07!6;CL:0000894!3.15e-07!6;CL:0000806!3.15e-07!6;CL:0000807!3.15e-07!6;CL:0000805!3.15e-07!6;CL:0002425!3.15e-07!6;CL:0002436!3.15e-07!6;CL:0002427!3.15e-07!6;CL:0002428!3.15e-07!6;CL:0002429!3.15e-07!6;CL:0002433!3.15e-07!6;CL:0002431!3.15e-07!6;CL:0002432!3.15e-07!6;CL:0002031!6.67e-07!25|ontology_enrichment_celltype_v019_2=CL:0000791,3.10e-27,9;CL:0000789,3.10e-27,9;CL:0002420,3.10e-27,9;CL:0002419,3.10e-27,9;CL:0000790,3.10e-27,9;CL:0000624,1.58e-24,8;CL:0000084,5.23e-22,11;CL:0000827,5.23e-22,11;CL:0000838,4.78e-20,12;CL:0000893,8.92e-19,6;CL:0002489,8.92e-19,6;CL:0000898,8.92e-19,6;CL:0000809,8.92e-19,6;CL:0000810,8.92e-19,6;CL:0000895,8.92e-19,6;CL:0000808,8.92e-19,6;CL:0000894,8.92e-19,6;CL:0000806,8.92e-19,6;CL:0000807,8.92e-19,6;CL:0000805,8.92e-19,6;CL:0002425,8.92e-19,6;CL:0002436,8.92e-19,6;CL:0002427,8.92e-19,6;CL:0002428,8.92e-19,6;CL:0002429,8.92e-19,6;CL:0002433,8.92e-19,6;CL:0002431,8.92e-19,6;CL:0002432,8.92e-19,6;CL:0000542,2.18e-18,13;CL:0000051,2.18e-18,13;CL:0000738,1.06e-13,17;CL:0002087,1.06e-13,17;CL:0002031,5.70e-13,25;CL:0000988,1.10e-09,32;CL:0002032,1.10e-09,32;CL:0000037,1.10e-09,32;CL:0000837,1.10e-09,32|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007811!1.43e-21!86;UBERON:0000153!3.45e-20!94;UBERON:0004177!1.53e-13!29;UBERON:0000064!2.15e-12!99;UBERON:0002370!5.03e-12!23;UBERON:0000974!5.03e-12!23;UBERON:0004807!5.03e-12!23;UBERON:0005058!5.03e-12!23;UBERON:0003351!5.03e-12!23;UBERON:0009113!5.03e-12!23;UBERON:0003295!5.03e-12!23;UBERON:0009722!5.03e-12!23;UBERON:0005562!5.03e-12!23;UBERON:0007690!5.03e-12!23;UBERON:0006562!3.09e-11!24;UBERON:0003408!3.09e-11!24;UBERON:0001557!3.09e-11!24;UBERON:0001042!3.09e-11!24;UBERON:0008814!3.09e-11!24;UBERON:0009145!3.09e-11!24;UBERON:0002021!4.47e-11!10;UBERON:0000411!4.47e-11!10;UBERON:0001950!4.47e-11!10;UBERON:0000063!9.02e-11!35;UBERON:0000033!1.43e-10!63;UBERON:0001049!2.73e-10!52;UBERON:0005068!2.73e-10!52;UBERON:0006241!2.73e-10!52;UBERON:0007135!2.73e-10!52;UBERON:0000955!4.29e-10!50;UBERON:0006238!4.29e-10!50;UBERON:0002346!1.35e-09!71;UBERON:0003075!1.35e-09!71;UBERON:0007284!1.35e-09!71;UBERON:0002390!2.22e-09!45;UBERON:0003061!2.22e-09!45;UBERON:0002616!2.32e-09!49;UBERON:0003056!2.89e-09!49;UBERON:0000072!3.02e-09!27;UBERON:0002193!3.12e-09!48;UBERON:0002619!5.79e-09!17;UBERON:0002020!3.65e-08!34;UBERON:0000956!1.06e-07!21;UBERON:0001869!1.06e-07!21;UBERON:0000203!1.06e-07!21;UBERON:0000475!1.12e-07!200;UBERON:0000477!1.37e-07!154;UBERON:0002791!1.54e-07!29;UBERON:0003528!1.54e-07!29;UBERON:0001893!1.54e-07!29;UBERON:0003080!2.18e-07!40;UBERON:0002780!6.69e-07!39;UBERON:0001890!6.69e-07!39;UBERON:0006240!6.69e-07!39|ontology_enrichment_uberon_v019_2=UBERON:0002021,1.75e-30,10;UBERON:0000411,1.75e-30,10;UBERON:0001950,1.75e-30,10;UBERON:0002619,1.30e-20,17;UBERON:0000956,1.75e-19,21;UBERON:0001869,1.75e-19,21;UBERON:0000203,1.75e-19,21;UBERON:0003528,9.16e-16,29;UBERON:0002791,9.16e-16,29;UBERON:0001893,9.16e-16,29;UBERON:0000955,3.90e-14,47;UBERON:0006238,3.90e-14,47;UBERON:0002020,4.61e-13,34;UBERON:0002616,1.81e-12,46;UBERON:0002780,4.69e-11,39;UBERON:0001890,4.69e-11,39;UBERON:0006240,4.69e-11,39;UBERON:0003080,1.03e-10,40;UBERON:0001049,1.13e-10,52;UBERON:0005068,1.13e-10,52;UBERON:0006241,1.13e-10,52;UBERON:0007135,1.13e-10,52;UBERON:0000073,3.64e-10,54;UBERON:0003056,2.82e-08,49;UBERON:0002346,4.22e-08,64;UBERON:0003075,4.22e-08,64;UBERON:0007284,4.22e-08,64;UBERON:0001017,6.37e-08,73;UBERON:0001016,1.27e-07,75;UBERON:0010371,9.86e-07,73|phase1_expression=0,0,0,0,0,0,0,5.4231795845462,2.81577444303333,2.57470978954193,8.21846247482424,3.19088635981346,10.1008430659411,7.60557501045277,0,0.202475267389826,0,0.946386496074713,1.09691546884591,1.27316895539409,0.510259740906419,0.496454756004426,0.261199789138935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167782606057736,4.35217285206807,3.6970317905671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122490799214954,0.0958454710182364,0,0,0.383062014255563,0.153606533256243,0,0,0,0.279182999001381,0,0.45839474333043,0.883885756421003,0.854230084794618,0.186399445825301,0,0,0,0.860423876981386,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.22836775943812,3.36619248741323,0.29688427812965,0,0,0,0,0,0,0,0.144599356919912,0,0,0.220841518460394,0,0,6.73395833126558,6.70229461803056,0.255457055208591,0,0,0.127070227073065,0.449371918214468,2.28750301409313,0.125654352112864,4.17178368461463,2.81287003063364,0.20778804455956,0.811206315338788,0,0,0,0.210441855886474,0.130120442962704,0,0.180062129805349,0.150704817835715,0.408218994907967,0.384341160854549,0.281105173679186,0,0,0,0,0,0.278047249225598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3131894342054,0.102904612379284,0,0,0,0,0,0.201683524623343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193952487167626,0,0,0,0,0,0,0,0,0,0,0,0.25462585178142,0,0,0,0,0,0,0,0,0,0.369506380333209,0,0,0,0,0,0,0,0.157635144106191,0,0.159454768657487,0,0,0,0,0,0,0,0.481651769963376,0.35163505977661,0,0.252470927204373,0,0,0,0,0,0,0,0,0,8.67567554338879,0,0,0,0.164970122972535,0,0.242780636154981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532020700926821,0.178368817602071,0,0,0,0,0,0,0.161464426695906,0,0,0,0.291480836629851,0.927126510052548,0.341741761595705,0.206386867963223,0,0.188368457004691,0.136694227721025,0.915112692826091,0,0.279902904647316,0.276399947608848,0,0,0,0,0,0,0,0,0.26175594198403,0,0,0,0,0,0,0,0,0,0.13020438484395,0,0,0,0.316011120628178,0.202725215290164,0.308132871494482,0.389762468933385,0.358053391334963,0.198681354781265,0.360586348559907,0.590758108698309,0.504832249740738,0.457240839929999,0.403304740547362,0.584747284438515,0.192423683280659,0.584384510907845,0,0,0,0,0,0,0,0,0,6.21227026878773,6.44455331110048,6.87474616127276,4.64003592327956,5.48066015816514,6.7985450765073,4.05013500139084,3.60256962579376,4.07828168085784,4.14208249401456,0.103787347584177,0,0,0,0,0,0,0.206035057238894,0,0.252697211763798,0,0,0,0,0.17230640686684,0,0,0,0,0.147198920134397,0,0,0.238436189947321,0,0,0,0,0,0.407412341537585,0.561142271657738,0,0,0,0,0,0,0,0,0.191288332068843,0,0|short_description=p3@Ipcef1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:320495 | |||
|HGNC= | |||
|MCL_coexpression_id=2554 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q5DU31 | |||
|association_with_transcript=20bp_to_ENSMUST00000105617_5end | |||
|cluster_id=chr10:3366185..3366194,+ | |||
|description=CAGE_peak_3_at_Ipcef1_5end | |||
|id=chr10:3366185..3366194,+ | |||
|ontology_enrichment_celltype=CL:0000838!3.29e-11!12;CL:0000084!4.84e-11!11;CL:0000827!4.84e-11!11;CL:0000542!5.13e-10!13;CL:0000051!5.13e-10!13;CL:0000791!5.19e-10!9;CL:0000789!5.19e-10!9;CL:0002420!5.19e-10!9;CL:0002419!5.19e-10!9;CL:0000790!5.19e-10!9;CL:0000624!4.01e-09!8;CL:0000893!3.15e-07!6;CL:0002489!3.15e-07!6;CL:0000898!3.15e-07!6;CL:0000809!3.15e-07!6;CL:0000810!3.15e-07!6;CL:0000895!3.15e-07!6;CL:0000808!3.15e-07!6;CL:0000894!3.15e-07!6;CL:0000806!3.15e-07!6;CL:0000807!3.15e-07!6;CL:0000805!3.15e-07!6;CL:0002425!3.15e-07!6;CL:0002436!3.15e-07!6;CL:0002427!3.15e-07!6;CL:0002428!3.15e-07!6;CL:0002429!3.15e-07!6;CL:0002433!3.15e-07!6;CL:0002431!3.15e-07!6;CL:0002432!3.15e-07!6;CL:0002031!6.67e-07!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.10e-27,9;CL:0000789,3.10e-27,9;CL:0002420,3.10e-27,9;CL:0002419,3.10e-27,9;CL:0000790,3.10e-27,9;CL:0000624,1.58e-24,8;CL:0000084,5.23e-22,11;CL:0000827,5.23e-22,11;CL:0000838,4.78e-20,12;CL:0000893,8.92e-19,6;CL:0002489,8.92e-19,6;CL:0000898,8.92e-19,6;CL:0000809,8.92e-19,6;CL:0000810,8.92e-19,6;CL:0000895,8.92e-19,6;CL:0000808,8.92e-19,6;CL:0000894,8.92e-19,6;CL:0000806,8.92e-19,6;CL:0000807,8.92e-19,6;CL:0000805,8.92e-19,6;CL:0002425,8.92e-19,6;CL:0002436,8.92e-19,6;CL:0002427,8.92e-19,6;CL:0002428,8.92e-19,6;CL:0002429,8.92e-19,6;CL:0002433,8.92e-19,6;CL:0002431,8.92e-19,6;CL:0002432,8.92e-19,6;CL:0000542,2.18e-18,13;CL:0000051,2.18e-18,13;CL:0000738,1.06e-13,17;CL:0002087,1.06e-13,17;CL:0002031,5.70e-13,25;CL:0000988,1.10e-09,32;CL:0002032,1.10e-09,32;CL:0000037,1.10e-09,32;CL:0000837,1.10e-09,32 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007811!1.43e-21!86;UBERON:0000153!3.45e-20!94;UBERON:0004177!1.53e-13!29;UBERON:0000064!2.15e-12!99;UBERON:0002370!5.03e-12!23;UBERON:0000974!5.03e-12!23;UBERON:0004807!5.03e-12!23;UBERON:0005058!5.03e-12!23;UBERON:0003351!5.03e-12!23;UBERON:0009113!5.03e-12!23;UBERON:0003295!5.03e-12!23;UBERON:0009722!5.03e-12!23;UBERON:0005562!5.03e-12!23;UBERON:0007690!5.03e-12!23;UBERON:0006562!3.09e-11!24;UBERON:0003408!3.09e-11!24;UBERON:0001557!3.09e-11!24;UBERON:0001042!3.09e-11!24;UBERON:0008814!3.09e-11!24;UBERON:0009145!3.09e-11!24;UBERON:0002021!4.47e-11!10;UBERON:0000411!4.47e-11!10;UBERON:0001950!4.47e-11!10;UBERON:0000063!9.02e-11!35;UBERON:0000033!1.43e-10!63;UBERON:0001049!2.73e-10!52;UBERON:0005068!2.73e-10!52;UBERON:0006241!2.73e-10!52;UBERON:0007135!2.73e-10!52;UBERON:0000955!4.29e-10!50;UBERON:0006238!4.29e-10!50;UBERON:0002346!1.35e-09!71;UBERON:0003075!1.35e-09!71;UBERON:0007284!1.35e-09!71;UBERON:0002390!2.22e-09!45;UBERON:0003061!2.22e-09!45;UBERON:0002616!2.32e-09!49;UBERON:0003056!2.89e-09!49;UBERON:0000072!3.02e-09!27;UBERON:0002193!3.12e-09!48;UBERON:0002619!5.79e-09!17;UBERON:0002020!3.65e-08!34;UBERON:0000956!1.06e-07!21;UBERON:0001869!1.06e-07!21;UBERON:0000203!1.06e-07!21;UBERON:0000475!1.12e-07!200;UBERON:0000477!1.37e-07!154;UBERON:0002791!1.54e-07!29;UBERON:0003528!1.54e-07!29;UBERON:0001893!1.54e-07!29;UBERON:0003080!2.18e-07!40;UBERON:0002780!6.69e-07!39;UBERON:0001890!6.69e-07!39;UBERON:0006240!6.69e-07!39 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002021,1.75e-30,10;UBERON:0000411,1.75e-30,10;UBERON:0001950,1.75e-30,10;UBERON:0002619,1.30e-20,17;UBERON:0000956,1.75e-19,21;UBERON:0001869,1.75e-19,21;UBERON:0000203,1.75e-19,21;UBERON:0003528,9.16e-16,29;UBERON:0002791,9.16e-16,29;UBERON:0001893,9.16e-16,29;UBERON:0000955,3.90e-14,47;UBERON:0006238,3.90e-14,47;UBERON:0002020,4.61e-13,34;UBERON:0002616,1.81e-12,46;UBERON:0002780,4.69e-11,39;UBERON:0001890,4.69e-11,39;UBERON:0006240,4.69e-11,39;UBERON:0003080,1.03e-10,40;UBERON:0001049,1.13e-10,52;UBERON:0005068,1.13e-10,52;UBERON:0006241,1.13e-10,52;UBERON:0007135,1.13e-10,52;UBERON:0000073,3.64e-10,54;UBERON:0003056,2.82e-08,49;UBERON:0002346,4.22e-08,64;UBERON:0003075,4.22e-08,64;UBERON:0007284,4.22e-08,64;UBERON:0001017,6.37e-08,73;UBERON:0001016,1.27e-07,75;UBERON:0010371,9.86e-07,73 | |||
|phase1_expression=0,0,0,0,0,0,0,5.4231795845462,2.81577444303333,2.57470978954193,8.21846247482424,3.19088635981346,10.1008430659411,7.60557501045277,0,0.202475267389826,0,0.946386496074713,1.09691546884591,1.27316895539409,0.510259740906419,0.496454756004426,0.261199789138935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167782606057736,4.35217285206807,3.6970317905671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122490799214954,0.0958454710182364,0,0,0.383062014255563,0.153606533256243,0,0,0,0.279182999001381,0,0.45839474333043,0.883885756421003,0.854230084794618,0.186399445825301,0,0,0,0.860423876981386,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.22836775943812,3.36619248741323,0.29688427812965,0,0,0,0,0,0,0,0.144599356919912,0,0,0.220841518460394,0,0,6.73395833126558,6.70229461803056,0.255457055208591,0,0,0.127070227073065,0.449371918214468,2.28750301409313,0.125654352112864,4.17178368461463,2.81287003063364,0.20778804455956,0.811206315338788,0,0,0,0.210441855886474,0.130120442962704,0,0.180062129805349,0.150704817835715,0.408218994907967,0.384341160854549,0.281105173679186,0,0,0,0,0,0.278047249225598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3131894342054,0.102904612379284,0,0,0,0,0,0.201683524623343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193952487167626,0,0,0,0,0,0,0,0,0,0,0,0.25462585178142,0,0,0,0,0,0,0,0,0,0.369506380333209,0,0,0,0,0,0,0,0.157635144106191,0,0.159454768657487,0,0,0,0,0,0,0,0.481651769963376,0.35163505977661,0,0.252470927204373,0,0,0,0,0,0,0,0,0,8.67567554338879,0,0,0,0.164970122972535,0,0.242780636154981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532020700926821,0.178368817602071,0,0,0,0,0,0,0.161464426695906,0,0,0,0.291480836629851,0.927126510052548,0.341741761595705,0.206386867963223,0,0.188368457004691,0.136694227721025,0.915112692826091,0,0.279902904647316,0.276399947608848,0,0,0,0,0,0,0,0,0.26175594198403,0,0,0,0,0,0,0,0,0,0.13020438484395,0,0,0,0.316011120628178,0.202725215290164,0.308132871494482,0.389762468933385,0.358053391334963,0.198681354781265,0.360586348559907,0.590758108698309,0.504832249740738,0.457240839929999,0.403304740547362,0.584747284438515,0.192423683280659,0.584384510907845,0,0,0,0,0,0,0,0,0,6.21227026878773,6.44455331110048,6.87474616127276,4.64003592327956,5.48066015816514,6.7985450765073,4.05013500139084,3.60256962579376,4.07828168085784,4.14208249401456,0.103787347584177,0,0,0,0,0,0,0.206035057238894,0,0.252697211763798,0,0,0,0,0.17230640686684,0,0,0,0,0.147198920134397,0,0,0.238436189947321,0,0,0,0,0,0.407412341537585,0.561142271657738,0,0,0,0,0,0,0,0,0.191288332068843,0,0 | |||
|short_description=p3@Ipcef1 | |||
}} |
Revision as of 07:58, 4 August 2015
Short description: | p3@Ipcef1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Ipcef1_5end |
Coexpression cluster: | MCL_coexpression_mm9:2554 |
Association with transcript: | 20bp_to_ENSMUST00000105617_5end |
EntrezGene: | 320495 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
occipital lobe | 1.75e-30 | 10 |
visual cortex | 1.75e-30 | 10 |
neocortex | 1.75e-30 | 10 |
regional part of cerebral cortex | 1.30e-20 | 17 |
cerebral cortex | 1.75e-19 | 21 |
cerebral hemisphere | 1.75e-19 | 21 |
pallium | 1.75e-19 | 21 |
brain grey matter | 9.16e-16 | 29 |
regional part of telencephalon | 9.16e-16 | 29 |
telencephalon | 9.16e-16 | 29 |
brain | 3.90e-14 | 47 |
future brain | 3.90e-14 | 47 |
gray matter | 4.61e-13 | 34 |
regional part of brain | 1.81e-12 | 46 |
regional part of forebrain | 4.69e-11 | 39 |
forebrain | 4.69e-11 | 39 |
future forebrain | 4.69e-11 | 39 |
anterior neural tube | 1.03e-10 | 40 |
neural tube | 1.13e-10 | 52 |
neural rod | 1.13e-10 | 52 |
future spinal cord | 1.13e-10 | 52 |
neural keel | 1.13e-10 | 52 |
regional part of nervous system | 3.64e-10 | 54 |
pre-chordal neural plate | 2.82e-08 | 49 |
neurectoderm | 4.22e-08 | 64 |
neural plate | 4.22e-08 | 64 |
presumptive neural plate | 4.22e-08 | 64 |
central nervous system | 6.37e-08 | 73 |
nervous system | 1.27e-07 | 75 |
ecto-epithelium | 9.86e-07 | 73 |