FFCP PHASE1:Mm9::chr2:124436014..124436021,+: Difference between revisions
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{{FFCP|EntrezGene=214968|HGNC=|MCL_coexpression_id=2283|UniProt=Q76KF0,A2AW76,A2AW75,A2AW74,A2AW73|association_with_transcript=-10bp_to_ENSMUST00000051419,ENSMUST00000076335,ENSMUST00000077847,ENSMUST00000078621,NM_172537,NM_199238,NM_199239,NM_199240,NM_199241,uc008mbn.1,uc008mbo.1,uc008mbp.1,uc008mbq.1,uc008mbr.2,uc008mbs.2,uc008mbt.2_5end|description=CAGE_peak_6_at_Sema6d_5end|id=chr2:124436014..124436021,+|ontology_enrichment_celltype=CL:0000117!1.41e-10!23;CL:0000337!1.41e-10!23|ontology_enrichment_celltype_v019_2=CL:0000117,1.45e-18,23;CL:0000337,1.45e-18,23;CL:0000540,4.86e-13,33;CL:0000047,4.86e-13,33;CL:0000031,4.86e-13,33;CL:0000404,4.86e-13,33;CL:0002609,9.62e-12,6;CL:0002319,2.06e-11,43;CL:0000221,5.00e-11,44;CL:0000133,5.00e-11,44;CL:0000393,2.88e-10,39;CL:0000211,2.88e-10,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!3.65e-12!52;UBERON:0005068!3.65e-12!52;UBERON:0006241!3.65e-12!52;UBERON:0007135!3.65e-12!52;UBERON:0001017!3.98e-12!73;UBERON:0005743!3.98e-12!73;UBERON:0000073!1.34e-11!75;UBERON:0001016!1.34e-11!75;UBERON:0000955!5.80e-10!50;UBERON:0006238!5.80e-10!50;UBERON:0002616!1.32e-09!49;UBERON:0004121!3.79e-09!102;UBERON:0000924!3.79e-09!102;UBERON:0006601!3.79e-09!102;UBERON:0000033!6.72e-09!63;UBERON:0002020!6.13e-08!34;UBERON:0003080!1.08e-07!40;UBERON:0002346!2.61e-07!71;UBERON:0003075!2.61e-07!71;UBERON:0007284!2.61e-07!71;UBERON:0002780!3.20e-07!39;UBERON:0001890!3.20e-07!39;UBERON:0006240!3.20e-07!39|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.10e-15,73;UBERON:0001016,2.59e-14,75;UBERON:0000073,1.40e-12,54;UBERON:0001049,5.91e-12,52;UBERON:0005068,5.91e-12,52;UBERON:0006241,5.91e-12,52;UBERON:0007135,5.91e-12,52;UBERON:0004121,2.76e-11,95;UBERON:0000924,2.76e-11,95;UBERON:0006601,2.76e-11,95;UBERON:0002346,1.49e-08,64;UBERON:0003075,1.49e-08,64;UBERON:0007284,1.49e-08,64;UBERON:0010371,1.90e-08,73;UBERON:0002020,2.33e-08,34;UBERON:0003076,3.07e-08,12;UBERON:0003057,3.07e-08,12;UBERON:0002616,6.89e-08,46;UBERON:0000955,1.27e-07,47;UBERON:0006238,1.27e-07,47;UBERON:0002240,4.28e-07,6;UBERON:0005174,4.28e-07,6;UBERON:0001137,4.28e-07,6|phase1_expression=1.44133962394315,0.697950815278722,0,2.11724947914781,0,0.671517087647559,0.233612640595526,0,0,0,0,0,0,0,0,0.404950534779652,0.699561878128147,0,0.137114433605739,0,0.255129870453209,0,0,0.159992422793407,0.45881856213434,0.57423196411502,0,0.430942465371778,0.760093677825496,0.252030129759931,0.221730510655305,0,0,0,0.288851619751275,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0,0.439372365468944,0.194429899074283,0,1.43752564364972,0.167782606057736,0,0,0,0.573066879877513,0.515672092277442,1.21389876515759,2.11596391708813,1.26766280701236,0.338844532069132,0,0,0,0,0.898800331555214,1.92109152660777,12.1316846400919,10.5304631898719,10.7265730289205,1.14260393761521,0.883474163806454,3.30725157880376,2.97120960156533,3.67687514644008,0,1.27687338085188,2.15049146558741,0.923204014111357,0.914876436024097,2.6045668527838,1.11673199600552,0,0.763991238884051,2.94628585473668,1.85083185038834,3.91438836233131,0.151452386666368,0.151143120213571,2.6087803983151,0,0,0,0,0,0.140444420131752,0,0,0,0.704217098883403,0,0,0,0,0,0,0.11418387971906,0,0,0.173485326766136,0,0.461230994512117,0.301445281105245,0.23517741427141,0.125666591329675,0,0,0,0,0.220841518460394,0,0,5.5628351432194,4.60782754989601,0.255457055208591,0,0,0,1.79748767285787,1.83000241127451,0.753926112677186,0.869121600961382,0.255715457330331,1.24672826735736,1.62241263067758,0.101839363850316,0.373220911830279,0,0,0.260240885925407,0,0.540186389416048,0,0.816437989815934,0.512454881139399,0.843315521037559,0,0,0.189106080167819,0.703804496655795,1.09597866213787,1.11218899690239,1.0447564995665,0.823128545631774,0,0,0,0,0.621377317606506,0.469052119962192,0.720248245844059,0.946978942340841,0.787056926989615,0.925602677324269,0.465067889500816,0.536546802799238,0.116765342367169,0.329119699826961,0.820837320395476,0.648550476366846,0.438599962275997,0.439100230582101,0.671032093801859,0.841159794256509,5.76265829323993,0.330418782983798,0.528901133327089,0.426576501070468,0.696710015581316,0.515469845288373,0.605050573870028,0.889512175379481,0.760902504450237,0,1.15289268306808,1.75934646160189,1.59165177632921,0.974820435595601,0,0.432276099749388,0.199141273254367,0,0,0,0.407302655690628,0.193952487167626,0.210407459670956,0.0632365371242573,0.147610147979602,0.156998727841375,0.616985819609003,0.296452627087149,0.166845105716094,0.196558995113203,0,0.202860121388503,0.241177159752417,0,0,0.810676133875177,0.549122826376163,0,0.744281895337007,0,0,0,0,0,0.757965647081939,0.488894929326078,0.339490171550376,0.704070744865506,0.335012514883631,0,0.195133647857799,0.630540576424764,0.664394068946325,0.478364305972461,0,0.172684981865896,0.144649058581512,0,0,0,0.551873492609465,0.963303539926752,1.28932855251423,0,0.504941854408746,0,0,0,0.238968797952552,0.445597348164788,0.283076530788832,0,0.292255857911312,0,0.963963949265421,0.567760340833074,0.178065603667255,0.325773918707152,0.164970122972535,0,0,0.302323556964751,0,0,0,0,0,0.356497378384721,0,0,0,0.340439605753788,0.36012218806262,1.03486947026204,0.643011105094777,0.709360934569094,0.356737635204141,0.822745103010605,0.304464949114599,0.23467170806371,0.21183207086382,0,0.32977250588296,1.29171541356724,0.72375509913787,0.596861720015682,0.328281799490123,0,1.29797711407357,0.170870880797853,0,0.370389054739423,0,0.136694227721025,0.686334519619568,0.169978429993855,0.279902904647316,0.414599921413271,0,0.158167996790568,0.406638934253697,0.324016022465404,0,0.218362563746178,0,0.330613822901344,0.26175594198403,0.518459893167171,0,0,0.598066184175915,0.165458490457098,0.583353565032143,0.129159823477731,0.337912250981556,0.58678619322877,0.13020438484395,0.314578033277133,0,0,0,1.82452693761148,1.64337531463724,0.77952493786677,1.43221356533985,0.596044064343795,1.20195449519969,0.295379054349154,0.100966449948148,0.15241361331,0.302478555410522,0.584747284438515,0.192423683280659,0.116876902181569,1.13365191807606,0,0,0,0.19318959403219,0.750729901804728,0,0,0,0.564751842617067,0.460325236507177,0,0.171853182343688,0.685082519770642,0,0,0.45032120322422,0.453142408984205,1.03552062350364,1.14166082342594,2.39414924040619,1.36586884603307,0.486213434136588,1.04806581313991,0.735374033800057,0.666740183404846,1.03017528619447,0,0.505394423527595,1.2673964994512,0.377252682772152,0.842773567228942,0.704276676453562,0.459483751644906,0.952587382566147,0.695305955669133,0.964546102318525,0,0.441596760403192,0.685738504770831,1.06485483695602,0.476872379894642,0.581385666529314,0.658765662907314,0.930760686808441,1.09756783723664,0.263069711437843,0.679020569229309,1.12228454331548,0.830445126869219,0.788035859004508,1.22769312950907,1.08455788830176,1.35034627686799,0.749431733813838,0.467863216890817,1.07435527024149,0.57386499620653,0.441182838239031,0.231867835620421|short_description=p6@Sema6d}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:214968 | |||
|HGNC= | |||
|MCL_coexpression_id=2283 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q76KF0,uniprot:A2AW76,uniprot:A2AW75,uniprot:A2AW74,uniprot:A2AW73 | |||
|association_with_transcript=-10bp_to_ENSMUST00000051419,ENSMUST00000076335,ENSMUST00000077847,ENSMUST00000078621,NM_172537,NM_199238,NM_199239,NM_199240,NM_199241,uc008mbn.1,uc008mbo.1,uc008mbp.1,uc008mbq.1,uc008mbr.2,uc008mbs.2,uc008mbt.2_5end | |||
|cluster_id=chr2:124436014..124436021,+ | |||
|description=CAGE_peak_6_at_Sema6d_5end | |||
|id=chr2:124436014..124436021,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.41e-10!23;CL:0000337!1.41e-10!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.45e-18,23;CL:0000337,1.45e-18,23;CL:0000540,4.86e-13,33;CL:0000047,4.86e-13,33;CL:0000031,4.86e-13,33;CL:0000404,4.86e-13,33;CL:0002609,9.62e-12,6;CL:0002319,2.06e-11,43;CL:0000221,5.00e-11,44;CL:0000133,5.00e-11,44;CL:0000393,2.88e-10,39;CL:0000211,2.88e-10,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!3.65e-12!52;UBERON:0005068!3.65e-12!52;UBERON:0006241!3.65e-12!52;UBERON:0007135!3.65e-12!52;UBERON:0001017!3.98e-12!73;UBERON:0005743!3.98e-12!73;UBERON:0000073!1.34e-11!75;UBERON:0001016!1.34e-11!75;UBERON:0000955!5.80e-10!50;UBERON:0006238!5.80e-10!50;UBERON:0002616!1.32e-09!49;UBERON:0004121!3.79e-09!102;UBERON:0000924!3.79e-09!102;UBERON:0006601!3.79e-09!102;UBERON:0000033!6.72e-09!63;UBERON:0002020!6.13e-08!34;UBERON:0003080!1.08e-07!40;UBERON:0002346!2.61e-07!71;UBERON:0003075!2.61e-07!71;UBERON:0007284!2.61e-07!71;UBERON:0002780!3.20e-07!39;UBERON:0001890!3.20e-07!39;UBERON:0006240!3.20e-07!39 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.10e-15,73;UBERON:0001016,2.59e-14,75;UBERON:0000073,1.40e-12,54;UBERON:0001049,5.91e-12,52;UBERON:0005068,5.91e-12,52;UBERON:0006241,5.91e-12,52;UBERON:0007135,5.91e-12,52;UBERON:0004121,2.76e-11,95;UBERON:0000924,2.76e-11,95;UBERON:0006601,2.76e-11,95;UBERON:0002346,1.49e-08,64;UBERON:0003075,1.49e-08,64;UBERON:0007284,1.49e-08,64;UBERON:0010371,1.90e-08,73;UBERON:0002020,2.33e-08,34;UBERON:0003076,3.07e-08,12;UBERON:0003057,3.07e-08,12;UBERON:0002616,6.89e-08,46;UBERON:0000955,1.27e-07,47;UBERON:0006238,1.27e-07,47;UBERON:0002240,4.28e-07,6;UBERON:0005174,4.28e-07,6;UBERON:0001137,4.28e-07,6 | |||
|phase1_expression=1.44133962394315,0.697950815278722,0,2.11724947914781,0,0.671517087647559,0.233612640595526,0,0,0,0,0,0,0,0,0.404950534779652,0.699561878128147,0,0.137114433605739,0,0.255129870453209,0,0,0.159992422793407,0.45881856213434,0.57423196411502,0,0.430942465371778,0.760093677825496,0.252030129759931,0.221730510655305,0,0,0,0.288851619751275,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0,0.439372365468944,0.194429899074283,0,1.43752564364972,0.167782606057736,0,0,0,0.573066879877513,0.515672092277442,1.21389876515759,2.11596391708813,1.26766280701236,0.338844532069132,0,0,0,0,0.898800331555214,1.92109152660777,12.1316846400919,10.5304631898719,10.7265730289205,1.14260393761521,0.883474163806454,3.30725157880376,2.97120960156533,3.67687514644008,0,1.27687338085188,2.15049146558741,0.923204014111357,0.914876436024097,2.6045668527838,1.11673199600552,0,0.763991238884051,2.94628585473668,1.85083185038834,3.91438836233131,0.151452386666368,0.151143120213571,2.6087803983151,0,0,0,0,0,0.140444420131752,0,0,0,0.704217098883403,0,0,0,0,0,0,0.11418387971906,0,0,0.173485326766136,0,0.461230994512117,0.301445281105245,0.23517741427141,0.125666591329675,0,0,0,0,0.220841518460394,0,0,5.5628351432194,4.60782754989601,0.255457055208591,0,0,0,1.79748767285787,1.83000241127451,0.753926112677186,0.869121600961382,0.255715457330331,1.24672826735736,1.62241263067758,0.101839363850316,0.373220911830279,0,0,0.260240885925407,0,0.540186389416048,0,0.816437989815934,0.512454881139399,0.843315521037559,0,0,0.189106080167819,0.703804496655795,1.09597866213787,1.11218899690239,1.0447564995665,0.823128545631774,0,0,0,0,0.621377317606506,0.469052119962192,0.720248245844059,0.946978942340841,0.787056926989615,0.925602677324269,0.465067889500816,0.536546802799238,0.116765342367169,0.329119699826961,0.820837320395476,0.648550476366846,0.438599962275997,0.439100230582101,0.671032093801859,0.841159794256509,5.76265829323993,0.330418782983798,0.528901133327089,0.426576501070468,0.696710015581316,0.515469845288373,0.605050573870028,0.889512175379481,0.760902504450237,0,1.15289268306808,1.75934646160189,1.59165177632921,0.974820435595601,0,0.432276099749388,0.199141273254367,0,0,0,0.407302655690628,0.193952487167626,0.210407459670956,0.0632365371242573,0.147610147979602,0.156998727841375,0.616985819609003,0.296452627087149,0.166845105716094,0.196558995113203,0,0.202860121388503,0.241177159752417,0,0,0.810676133875177,0.549122826376163,0,0.744281895337007,0,0,0,0,0,0.757965647081939,0.488894929326078,0.339490171550376,0.704070744865506,0.335012514883631,0,0.195133647857799,0.630540576424764,0.664394068946325,0.478364305972461,0,0.172684981865896,0.144649058581512,0,0,0,0.551873492609465,0.963303539926752,1.28932855251423,0,0.504941854408746,0,0,0,0.238968797952552,0.445597348164788,0.283076530788832,0,0.292255857911312,0,0.963963949265421,0.567760340833074,0.178065603667255,0.325773918707152,0.164970122972535,0,0,0.302323556964751,0,0,0,0,0,0.356497378384721,0,0,0,0.340439605753788,0.36012218806262,1.03486947026204,0.643011105094777,0.709360934569094,0.356737635204141,0.822745103010605,0.304464949114599,0.23467170806371,0.21183207086382,0,0.32977250588296,1.29171541356724,0.72375509913787,0.596861720015682,0.328281799490123,0,1.29797711407357,0.170870880797853,0,0.370389054739423,0,0.136694227721025,0.686334519619568,0.169978429993855,0.279902904647316,0.414599921413271,0,0.158167996790568,0.406638934253697,0.324016022465404,0,0.218362563746178,0,0.330613822901344,0.26175594198403,0.518459893167171,0,0,0.598066184175915,0.165458490457098,0.583353565032143,0.129159823477731,0.337912250981556,0.58678619322877,0.13020438484395,0.314578033277133,0,0,0,1.82452693761148,1.64337531463724,0.77952493786677,1.43221356533985,0.596044064343795,1.20195449519969,0.295379054349154,0.100966449948148,0.15241361331,0.302478555410522,0.584747284438515,0.192423683280659,0.116876902181569,1.13365191807606,0,0,0,0.19318959403219,0.750729901804728,0,0,0,0.564751842617067,0.460325236507177,0,0.171853182343688,0.685082519770642,0,0,0.45032120322422,0.453142408984205,1.03552062350364,1.14166082342594,2.39414924040619,1.36586884603307,0.486213434136588,1.04806581313991,0.735374033800057,0.666740183404846,1.03017528619447,0,0.505394423527595,1.2673964994512,0.377252682772152,0.842773567228942,0.704276676453562,0.459483751644906,0.952587382566147,0.695305955669133,0.964546102318525,0,0.441596760403192,0.685738504770831,1.06485483695602,0.476872379894642,0.581385666529314,0.658765662907314,0.930760686808441,1.09756783723664,0.263069711437843,0.679020569229309,1.12228454331548,0.830445126869219,0.788035859004508,1.22769312950907,1.08455788830176,1.35034627686799,0.749431733813838,0.467863216890817,1.07435527024149,0.57386499620653,0.441182838239031,0.231867835620421 | |||
|short_description=p6@Sema6d | |||
}} |
Revision as of 22:35, 3 August 2015
Short description: | p6@Sema6d |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Sema6d_5end |
Coexpression cluster: | MCL_coexpression_mm9:2283 |
Association with transcript: | -10bp_to_ENSMUST00000051419, ENSMUST00000076335, ENSMUST00000077847, ENSMUST00000078621, NM_172537, NM_199238, NM_199239, NM_199240, NM_199241, uc008mbn.1, uc008mbo.1, uc008mbp.1, uc008mbq.1, uc008mbr.2, uc008mbs.2, uc008mbt.2_5end |
EntrezGene: | 214968 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.45e-18 | 23 |
neuroblast (sensu Vertebrata) | 1.45e-18 | 23 |
neuron | 4.86e-13 | 33 |
neuronal stem cell | 4.86e-13 | 33 |
neuroblast | 4.86e-13 | 33 |
electrically signaling cell | 4.86e-13 | 33 |
neuron of cerebral cortex | 9.62e-12 | 6 |
neural cell | 2.06e-11 | 43 |
ectodermal cell | 5.00e-11 | 44 |
neurectodermal cell | 5.00e-11 | 44 |
electrically responsive cell | 2.88e-10 | 39 |
electrically active cell | 2.88e-10 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 6.10e-15 | 73 |
nervous system | 2.59e-14 | 75 |
regional part of nervous system | 1.40e-12 | 54 |
neural tube | 5.91e-12 | 52 |
neural rod | 5.91e-12 | 52 |
future spinal cord | 5.91e-12 | 52 |
neural keel | 5.91e-12 | 52 |
ectoderm-derived structure | 2.76e-11 | 95 |
ectoderm | 2.76e-11 | 95 |
presumptive ectoderm | 2.76e-11 | 95 |
neurectoderm | 1.49e-08 | 64 |
neural plate | 1.49e-08 | 64 |
presumptive neural plate | 1.49e-08 | 64 |
ecto-epithelium | 1.90e-08 | 73 |
gray matter | 2.33e-08 | 34 |
posterior neural tube | 3.07e-08 | 12 |
chordal neural plate | 3.07e-08 | 12 |
regional part of brain | 6.89e-08 | 46 |
brain | 1.27e-07 | 47 |
future brain | 1.27e-07 | 47 |
spinal cord | 4.28e-07 | 6 |
dorsal region element | 4.28e-07 | 6 |
dorsum | 4.28e-07 | 6 |