FFCP PHASE1:Mm9::chr2:120676125..120676153,-: Difference between revisions
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{{FFCP|EntrezGene=140810|HGNC=|MCL_coexpression_id=208|UniProt=Q3UVR3,A2AW13,A2AW15|association_with_transcript=0bp_to_ENSMUST00000057135,ENSMUST00000085840,ENSMUST00000143051,NM_001024856,NM_001024857,uc008lww.1,uc008lwx.1_5end|description=CAGE_peak_2_at_Ttbk2_5end|id=chr2:120676125..120676153,-|ontology_enrichment_celltype=CL:0000540!6.41e-15!33;CL:0000047!6.41e-15!33;CL:0000031!6.41e-15!33;CL:0000404!6.41e-15!33;CL:0000117!2.67e-13!23;CL:0000337!2.67e-13!23;CL:0000393!3.81e-12!39;CL:0000211!3.81e-12!39;CL:0002319!1.83e-07!43;CL:0000221!2.10e-07!44;CL:0000133!2.10e-07!44|ontology_enrichment_celltype_v019_2=CL:0000540,6.32e-15,33;CL:0000047,6.32e-15,33;CL:0000031,6.32e-15,33;CL:0000404,6.32e-15,33;CL:0000117,2.64e-13,23;CL:0000337,2.64e-13,23;CL:0000393,3.76e-12,39;CL:0000211,3.76e-12,39;CL:0002319,1.60e-07,43;CL:0000221,1.84e-07,44;CL:0000133,1.84e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!8.86e-20!73;UBERON:0005743!8.86e-20!73;UBERON:0000073!2.56e-19!75;UBERON:0001016!2.56e-19!75;UBERON:0002346!1.94e-17!71;UBERON:0003075!1.94e-17!71;UBERON:0007284!1.94e-17!71;UBERON:0001049!1.92e-16!52;UBERON:0005068!1.92e-16!52;UBERON:0006241!1.92e-16!52;UBERON:0007135!1.92e-16!52;UBERON:0000033!5.82e-16!63;UBERON:0004121!8.09e-16!102;UBERON:0000924!8.09e-16!102;UBERON:0006601!8.09e-16!102;UBERON:0000955!1.52e-15!50;UBERON:0006238!1.52e-15!50;UBERON:0002616!4.85e-15!49;UBERON:0003056!5.23e-15!49;UBERON:0002020!1.25e-14!34;UBERON:0003080!4.41e-13!40;UBERON:0002780!1.76e-12!39;UBERON:0001890!1.76e-12!39;UBERON:0006240!1.76e-12!39;UBERON:0007811!3.20e-12!86;UBERON:0000153!3.67e-12!94;UBERON:0002791!5.58e-12!29;UBERON:0003528!5.58e-12!29;UBERON:0001893!5.58e-12!29;UBERON:0000956!7.40e-08!21;UBERON:0001869!7.40e-08!21;UBERON:0000203!7.40e-08!21|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.27e-20,73;UBERON:0001016,2.11e-19,75;UBERON:0002346,2.32e-19,64;UBERON:0003075,2.32e-19,64;UBERON:0007284,2.32e-19,64;UBERON:0000073,8.70e-18,54;UBERON:0004121,4.53e-17,95;UBERON:0000924,4.53e-17,95;UBERON:0006601,4.53e-17,95;UBERON:0001049,1.73e-16,52;UBERON:0005068,1.73e-16,52;UBERON:0006241,1.73e-16,52;UBERON:0007135,1.73e-16,52;UBERON:0010371,4.63e-16,73;UBERON:0010314,3.48e-15,92;UBERON:0003056,5.16e-15,49;UBERON:0002020,1.23e-14,34;UBERON:0000955,1.08e-13,47;UBERON:0006238,1.08e-13,47;UBERON:0002616,3.34e-13,46;UBERON:0003080,4.35e-13,40;UBERON:0002780,1.74e-12,39;UBERON:0001890,1.74e-12,39;UBERON:0006240,1.74e-12,39;UBERON:0003528,5.52e-12,29;UBERON:0002791,5.52e-12,29;UBERON:0001893,5.52e-12,29;UBERON:0000956,7.36e-08,21;UBERON:0001869,7.36e-08,21;UBERON:0000203,7.36e-08,21|phase1_expression=4.64431656603902,1.74487703819681,4.09499315450582,6.0492842261366,4.00716583957078,2.18243053485457,0.934450562382103,2.1950964985068,1.12630977721333,3.27690336850791,0.171217968225505,1.19658238493005,1.54080656938085,2.01066925563694,1.99865857089398,1.82227740650843,4.89693314689703,1.89277299214943,1.7824876368746,1.69755860719212,23.216818211242,2.28369187762036,1.30599894569468,0.159992422793407,0.68822784320151,1.14846392823004,0,1.29282739611533,1.90023419456374,1.00812051903972,0.665191531965914,0.635030673459631,1.84519436275371,0,1.73310971850765,1.82858109894342,2.45003227514843,2.09265815368454,0.7813353445238,2.09409497589519,0,2.04913645487534,1.45653105909346,3.52511090331616,2.33166941804883,3.12029478674859,0,0.436050312760893,1.09843091367236,1.36100929351998,1.67983705950435,0,1.51004345451963,0.725362142011344,1.00828139742739,1.02903774414379,3.72493471920384,3.09403255366465,10.3181395038395,19.0436752537932,12.6766280701236,1.0165335962074,1.77858959222228,1.3498495759221,0,2.1314403448383,1.19840044207362,1.92109152660777,9.64313394468842,6.34527910158946,9.25429829946081,9.42648248532552,6.84692476950002,10.1667363348412,8.24271050756833,7.35375029288017,23.1243350098716,19.9192247412893,22.5801603886678,10.9465618816061,12.8997577479398,11.4600941522487,18.9844439320939,12.380777420697,17.72459674211,17.6777151284201,17.5117167382897,15.2847545576746,2.27178579999552,4.08086424576642,12.4641730141721,0.860423876981386,3.39985666853875,1.61910957491345,1.29955283489534,1.34408066129201,4.49422144421606,3.40860645156115,3.37721805983729,1.41335829804136,3.52108549441701,1.28326477414318,2.54805239706646,0,0.649473123033642,1.52015919285059,0,5.36664234679582,1.8125651855302,3.85949561568544,2.94925055502431,3.04465478312141,3.22861696158482,2.56228488939458,3.29248379979973,2.51333182659351,2.96633961281249,1.73519228303894,1.76922110389975,4.20593809863264,1.98757366614354,0.969750506270444,0,11.1256702864388,9.84399522023239,1.53274233125155,2.63593273913025,1.19980546198682,1.90605340609597,18.8736205650077,12.8100168789215,6.78533501409468,12.3415267336516,10.2286182932132,14.5451631191692,14.1149898868949,3.66621709861139,2.48813941220186,2.52722758433675,3.99839526184301,3.3831315170303,4.13823787980251,6.48223667299257,5.72678307775717,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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:140810 | |||
|HGNC= | |||
|MCL_coexpression_id=208 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q3UVR3,uniprot:A2AW13,uniprot:A2AW15 | |||
|association_with_transcript=0bp_to_ENSMUST00000057135,ENSMUST00000085840,ENSMUST00000143051,NM_001024856,NM_001024857,uc008lww.1,uc008lwx.1_5end | |||
|cluster_id=chr2:120676125..120676153,- | |||
|description=CAGE_peak_2_at_Ttbk2_5end | |||
|id=chr2:120676125..120676153,- | |||
|ontology_enrichment_celltype=CL:0000540!6.41e-15!33;CL:0000047!6.41e-15!33;CL:0000031!6.41e-15!33;CL:0000404!6.41e-15!33;CL:0000117!2.67e-13!23;CL:0000337!2.67e-13!23;CL:0000393!3.81e-12!39;CL:0000211!3.81e-12!39;CL:0002319!1.83e-07!43;CL:0000221!2.10e-07!44;CL:0000133!2.10e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,6.32e-15,33;CL:0000047,6.32e-15,33;CL:0000031,6.32e-15,33;CL:0000404,6.32e-15,33;CL:0000117,2.64e-13,23;CL:0000337,2.64e-13,23;CL:0000393,3.76e-12,39;CL:0000211,3.76e-12,39;CL:0002319,1.60e-07,43;CL:0000221,1.84e-07,44;CL:0000133,1.84e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.86e-20!73;UBERON:0005743!8.86e-20!73;UBERON:0000073!2.56e-19!75;UBERON:0001016!2.56e-19!75;UBERON:0002346!1.94e-17!71;UBERON:0003075!1.94e-17!71;UBERON:0007284!1.94e-17!71;UBERON:0001049!1.92e-16!52;UBERON:0005068!1.92e-16!52;UBERON:0006241!1.92e-16!52;UBERON:0007135!1.92e-16!52;UBERON:0000033!5.82e-16!63;UBERON:0004121!8.09e-16!102;UBERON:0000924!8.09e-16!102;UBERON:0006601!8.09e-16!102;UBERON:0000955!1.52e-15!50;UBERON:0006238!1.52e-15!50;UBERON:0002616!4.85e-15!49;UBERON:0003056!5.23e-15!49;UBERON:0002020!1.25e-14!34;UBERON:0003080!4.41e-13!40;UBERON:0002780!1.76e-12!39;UBERON:0001890!1.76e-12!39;UBERON:0006240!1.76e-12!39;UBERON:0007811!3.20e-12!86;UBERON:0000153!3.67e-12!94;UBERON:0002791!5.58e-12!29;UBERON:0003528!5.58e-12!29;UBERON:0001893!5.58e-12!29;UBERON:0000956!7.40e-08!21;UBERON:0001869!7.40e-08!21;UBERON:0000203!7.40e-08!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.27e-20,73;UBERON:0001016,2.11e-19,75;UBERON:0002346,2.32e-19,64;UBERON:0003075,2.32e-19,64;UBERON:0007284,2.32e-19,64;UBERON:0000073,8.70e-18,54;UBERON:0004121,4.53e-17,95;UBERON:0000924,4.53e-17,95;UBERON:0006601,4.53e-17,95;UBERON:0001049,1.73e-16,52;UBERON:0005068,1.73e-16,52;UBERON:0006241,1.73e-16,52;UBERON:0007135,1.73e-16,52;UBERON:0010371,4.63e-16,73;UBERON:0010314,3.48e-15,92;UBERON:0003056,5.16e-15,49;UBERON:0002020,1.23e-14,34;UBERON:0000955,1.08e-13,47;UBERON:0006238,1.08e-13,47;UBERON:0002616,3.34e-13,46;UBERON:0003080,4.35e-13,40;UBERON:0002780,1.74e-12,39;UBERON:0001890,1.74e-12,39;UBERON:0006240,1.74e-12,39;UBERON:0003528,5.52e-12,29;UBERON:0002791,5.52e-12,29;UBERON:0001893,5.52e-12,29;UBERON:0000956,7.36e-08,21;UBERON:0001869,7.36e-08,21;UBERON:0000203,7.36e-08,21 | |||
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| |||
|short_description=p2@Ttbk2 | |||
}} |
Revision as of 21:23, 3 August 2015
Short description: | p2@Ttbk2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Ttbk2_5end |
Coexpression cluster: | MCL_coexpression_mm9:208 |
Association with transcript: | 0bp_to_ENSMUST00000057135, ENSMUST00000085840, ENSMUST00000143051, NM_001024856, NM_001024857, uc008lww.1, uc008lwx.1_5end |
EntrezGene: | 140810 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 6.32e-15 | 33 |
neuronal stem cell | 6.32e-15 | 33 |
neuroblast | 6.32e-15 | 33 |
electrically signaling cell | 6.32e-15 | 33 |
CNS neuron (sensu Vertebrata) | 2.64e-13 | 23 |
neuroblast (sensu Vertebrata) | 2.64e-13 | 23 |
electrically responsive cell | 3.76e-12 | 39 |
electrically active cell | 3.76e-12 | 39 |
neural cell | 1.60e-07 | 43 |
ectodermal cell | 1.84e-07 | 44 |
neurectodermal cell | 1.84e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 7.27e-20 | 73 |
nervous system | 2.11e-19 | 75 |
neurectoderm | 2.32e-19 | 64 |
neural plate | 2.32e-19 | 64 |
presumptive neural plate | 2.32e-19 | 64 |
regional part of nervous system | 8.70e-18 | 54 |
ectoderm-derived structure | 4.53e-17 | 95 |
ectoderm | 4.53e-17 | 95 |
presumptive ectoderm | 4.53e-17 | 95 |
neural tube | 1.73e-16 | 52 |
neural rod | 1.73e-16 | 52 |
future spinal cord | 1.73e-16 | 52 |
neural keel | 1.73e-16 | 52 |
ecto-epithelium | 4.63e-16 | 73 |
structure with developmental contribution from neural crest | 3.48e-15 | 92 |
pre-chordal neural plate | 5.16e-15 | 49 |
gray matter | 1.23e-14 | 34 |
brain | 1.08e-13 | 47 |
future brain | 1.08e-13 | 47 |
regional part of brain | 3.34e-13 | 46 |
anterior neural tube | 4.35e-13 | 40 |
regional part of forebrain | 1.74e-12 | 39 |
forebrain | 1.74e-12 | 39 |
future forebrain | 1.74e-12 | 39 |
brain grey matter | 5.52e-12 | 29 |
regional part of telencephalon | 5.52e-12 | 29 |
telencephalon | 5.52e-12 | 29 |
cerebral cortex | 7.36e-08 | 21 |
cerebral hemisphere | 7.36e-08 | 21 |
pallium | 7.36e-08 | 21 |