FFCP PHASE1:Mm9::chr11:69651505..69651540,-: Difference between revisions
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{{FFCP|EntrezGene=216856|HGNC=|MCL_coexpression_id=108|UniProt=Q69ZK9|association_with_transcript=-219bp_to_ENSMUST00000108634,uc007jrx.1_5end|description=CAGE_peak_3_at_Nlgn2_5end|id=chr11:69651505..69651540,-|ontology_enrichment_celltype=CL:0000540!1.95e-15!33;CL:0000047!1.95e-15!33;CL:0000031!1.95e-15!33;CL:0000404!1.95e-15!33;CL:0000221!3.02e-14!44;CL:0000133!3.02e-14!44;CL:0002319!3.70e-14!43;CL:0000393!6.87e-14!39;CL:0000211!6.87e-14!39;CL:0000055!2.66e-12!50;CL:0000117!2.65e-11!23;CL:0000337!2.65e-11!23|ontology_enrichment_celltype_v019_2=CL:0000540,1.93e-17,33;CL:0000047,1.93e-17,33;CL:0000031,1.93e-17,33;CL:0000404,1.93e-17,33;CL:0000221,6.90e-16,44;CL:0000133,6.90e-16,44;CL:0002319,8.74e-16,43;CL:0000393,4.89e-15,39;CL:0000211,4.89e-15,39;CL:0000117,1.04e-12,23;CL:0000337,1.04e-12,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!6.35e-23!73;UBERON:0005743!6.35e-23!73;UBERON:0000073!3.13e-22!75;UBERON:0001016!3.13e-22!75;UBERON:0004121!3.14e-21!102;UBERON:0000924!3.14e-21!102;UBERON:0006601!3.14e-21!102;UBERON:0002346!8.50e-19!71;UBERON:0003075!8.50e-19!71;UBERON:0007284!8.50e-19!71;UBERON:0001049!8.20e-16!52;UBERON:0005068!8.20e-16!52;UBERON:0006241!8.20e-16!52;UBERON:0007135!8.20e-16!52;UBERON:0000033!1.32e-15!63;UBERON:0000955!3.25e-14!50;UBERON:0006238!3.25e-14!50;UBERON:0002616!7.39e-14!49;UBERON:0003056!2.19e-13!49;UBERON:0003080!6.62e-11!40;UBERON:0002780!1.74e-10!39;UBERON:0001890!1.74e-10!39;UBERON:0006240!1.74e-10!39;UBERON:0002020!5.20e-09!34;UBERON:0000153!4.59e-08!94;UBERON:0002791!5.67e-07!29;UBERON:0003528!5.67e-07!29;UBERON:0001893!5.67e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.65e-24,73;UBERON:0001016,2.46e-23,75;UBERON:0004121,7.79e-22,95;UBERON:0000924,7.79e-22,95;UBERON:0006601,7.79e-22,95;UBERON:0002346,2.13e-20,64;UBERON:0003075,2.13e-20,64;UBERON:0007284,2.13e-20,64;UBERON:0010371,6.61e-18,73;UBERON:0000073,1.14e-16,54;UBERON:0001049,3.03e-16,52;UBERON:0005068,3.03e-16,52;UBERON:0006241,3.03e-16,52;UBERON:0007135,3.03e-16,52;UBERON:0000955,1.31e-13,47;UBERON:0006238,1.31e-13,47;UBERON:0002616,3.24e-13,46;UBERON:0003056,3.84e-13,49;UBERON:0010314,2.99e-11,92;UBERON:0003080,8.65e-11,40;UBERON:0002780,2.51e-10,39;UBERON:0001890,2.51e-10,39;UBERON:0006240,2.51e-10,39;UBERON:0002020,1.10e-08,34|phase1_expression=1.76163731815273,0,0,0,0,0.33575854382378,0,0,0.422366166455,0.234064526321993,0,0,0,0,0.333109761815663,0,0,0,0,0,0.765389611359628,0,0.522399578277871,0,0,0,0,0.215471232685889,0,0,0,0,1.84519436275371,0,0,0.166234645358492,0.408338712524738,0,0,0,0.588231488031014,0,0,1.76255545165808,1.21652317463417,1.10128051297009,5.47673941043627,1.30815093828268,1.5378032791413,2.13872888981712,0.979904951377538,0,0,0,0,1.28629718017973,0.85960031981627,0.515672092277442,6.27181028664753,6.87688273053643,6.33831403506179,0.338844532069132,0.889294796111139,0.449949858640699,0,0,1.79760066311043,1.92109152660777,4.87341177849845,4.99521971827255,4.41682418837902,3.42781181284564,1.98781686856452,4.16468717330844,5.17565543498476,6.43453150627015,2.20231761998777,1.53224805702225,3.84016333140609,5.93488294785872,5.30628332893976,6.25096044668112,1.11673199600552,1.12552522006336,2.59757021220577,3.83017161115768,4.12877874317399,5.03278503728312,0.227178579999552,1.43585964202892,1.73918693221007,0,0,0,0,0,0.561777680527007,2.04516387093669,1.55871602761721,1.41335829804136,1.69012103732017,3.84979432242953,0,0,0.649473123033642,0.506719730950197,0,0.22836775943812,0,0.29688427812965,1.56136794089522,0.913396434936424,1.61430848079241,1.80867168663147,1.41106448562846,0.251333182659351,0.247194967734374,0.578397427679647,0.884610551949874,1.45590164952668,0.662524555381181,0,0,2.63502717310392,3.14170060220183,0.255457055208591,0.11981512450592,0,0,3.2953940669061,0.915001205637253,3.76963056338593,1.21677024134594,1.79000820131231,2.49345653471472,2.43361894601636,1.62942982160506,0.746441823660558,0.252722758433675,0.420883711772948,4.42409506073193,1.37941262660084,4.86167750474443,6.48030716693575,5.17077393550092,4.35586648968489,4.02917415606834,0.776110112217047,3.23351989399263,4.53854592402766,3.87092473160687,4.16471891612392,2.78047249225598,1.74126083261083,1.85203922767149,2.18937693500343,0,0.51469581422943,0,1.65700618028402,0.938104239924385,0.900310307305074,0.946978942340841,0,0.925602677324269,0.697601834251224,0.536546802799238,0.350296027101508,0.329119699826961,0.32833492815819,0.729619285912702,1.16959989940266,0.219550115291051,0.536825675041487,0.630869845692382,4.11618449517138,0,0,4.05247676016945,2.55460339046482,2.44848176511977,1.4117846723634,1.77902435075896,0.951128130562796,0,0.164698954724011,0,0.397912944082302,0.974820435595601,0.898819408654221,0,0,1.70701110857774,2.05647322697512,1.1270773567308,1.22190796707189,2.13347735884388,0.841629838683823,1.07502113111237,0.442830443938806,0.784993639206874,0.246794327843601,0,0.83422552858047,0.393117990226406,0.449724224769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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:216856 | |||
|HGNC= | |||
|MCL_coexpression_id=108 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q69ZK9 | |||
|association_with_transcript=-219bp_to_ENSMUST00000108634,uc007jrx.1_5end | |||
|cluster_id=chr11:69651505..69651540,- | |||
|description=CAGE_peak_3_at_Nlgn2_5end | |||
|id=chr11:69651505..69651540,- | |||
|ontology_enrichment_celltype=CL:0000540!1.95e-15!33;CL:0000047!1.95e-15!33;CL:0000031!1.95e-15!33;CL:0000404!1.95e-15!33;CL:0000221!3.02e-14!44;CL:0000133!3.02e-14!44;CL:0002319!3.70e-14!43;CL:0000393!6.87e-14!39;CL:0000211!6.87e-14!39;CL:0000055!2.66e-12!50;CL:0000117!2.65e-11!23;CL:0000337!2.65e-11!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.93e-17,33;CL:0000047,1.93e-17,33;CL:0000031,1.93e-17,33;CL:0000404,1.93e-17,33;CL:0000221,6.90e-16,44;CL:0000133,6.90e-16,44;CL:0002319,8.74e-16,43;CL:0000393,4.89e-15,39;CL:0000211,4.89e-15,39;CL:0000117,1.04e-12,23;CL:0000337,1.04e-12,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.35e-23!73;UBERON:0005743!6.35e-23!73;UBERON:0000073!3.13e-22!75;UBERON:0001016!3.13e-22!75;UBERON:0004121!3.14e-21!102;UBERON:0000924!3.14e-21!102;UBERON:0006601!3.14e-21!102;UBERON:0002346!8.50e-19!71;UBERON:0003075!8.50e-19!71;UBERON:0007284!8.50e-19!71;UBERON:0001049!8.20e-16!52;UBERON:0005068!8.20e-16!52;UBERON:0006241!8.20e-16!52;UBERON:0007135!8.20e-16!52;UBERON:0000033!1.32e-15!63;UBERON:0000955!3.25e-14!50;UBERON:0006238!3.25e-14!50;UBERON:0002616!7.39e-14!49;UBERON:0003056!2.19e-13!49;UBERON:0003080!6.62e-11!40;UBERON:0002780!1.74e-10!39;UBERON:0001890!1.74e-10!39;UBERON:0006240!1.74e-10!39;UBERON:0002020!5.20e-09!34;UBERON:0000153!4.59e-08!94;UBERON:0002791!5.67e-07!29;UBERON:0003528!5.67e-07!29;UBERON:0001893!5.67e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.65e-24,73;UBERON:0001016,2.46e-23,75;UBERON:0004121,7.79e-22,95;UBERON:0000924,7.79e-22,95;UBERON:0006601,7.79e-22,95;UBERON:0002346,2.13e-20,64;UBERON:0003075,2.13e-20,64;UBERON:0007284,2.13e-20,64;UBERON:0010371,6.61e-18,73;UBERON:0000073,1.14e-16,54;UBERON:0001049,3.03e-16,52;UBERON:0005068,3.03e-16,52;UBERON:0006241,3.03e-16,52;UBERON:0007135,3.03e-16,52;UBERON:0000955,1.31e-13,47;UBERON:0006238,1.31e-13,47;UBERON:0002616,3.24e-13,46;UBERON:0003056,3.84e-13,49;UBERON:0010314,2.99e-11,92;UBERON:0003080,8.65e-11,40;UBERON:0002780,2.51e-10,39;UBERON:0001890,2.51e-10,39;UBERON:0006240,2.51e-10,39;UBERON:0002020,1.10e-08,34 | |||
|phase1_expression=1.76163731815273,0,0,0,0,0.33575854382378,0,0,0.422366166455,0.234064526321993,0,0,0,0,0.333109761815663,0,0,0,0,0,0.765389611359628,0,0.522399578277871,0,0,0,0,0.215471232685889,0,0,0,0,1.84519436275371,0,0,0.166234645358492,0.408338712524738,0,0,0,0.588231488031014,0,0,1.76255545165808,1.21652317463417,1.10128051297009,5.47673941043627,1.30815093828268,1.5378032791413,2.13872888981712,0.979904951377538,0,0,0,0,1.28629718017973,0.85960031981627,0.515672092277442,6.27181028664753,6.87688273053643,6.33831403506179,0.338844532069132,0.889294796111139,0.449949858640699,0,0,1.79760066311043,1.92109152660777,4.87341177849845,4.99521971827255,4.41682418837902,3.42781181284564,1.98781686856452,4.16468717330844,5.17565543498476,6.43453150627015,2.20231761998777,1.53224805702225,3.84016333140609,5.93488294785872,5.30628332893976,6.25096044668112,1.11673199600552,1.12552522006336,2.59757021220577,3.83017161115768,4.12877874317399,5.03278503728312,0.227178579999552,1.43585964202892,1.73918693221007,0,0,0,0,0,0.561777680527007,2.04516387093669,1.55871602761721,1.41335829804136,1.69012103732017,3.84979432242953,0,0,0.649473123033642,0.506719730950197,0,0.22836775943812,0,0.29688427812965,1.56136794089522,0.913396434936424,1.61430848079241,1.80867168663147,1.41106448562846,0.251333182659351,0.247194967734374,0.578397427679647,0.884610551949874,1.45590164952668,0.662524555381181,0,0,2.63502717310392,3.14170060220183,0.255457055208591,0.11981512450592,0,0,3.2953940669061,0.915001205637253,3.76963056338593,1.21677024134594,1.79000820131231,2.49345653471472,2.43361894601636,1.62942982160506,0.746441823660558,0.252722758433675,0.420883711772948,4.42409506073193,1.37941262660084,4.86167750474443,6.48030716693575,5.17077393550092,4.35586648968489,4.02917415606834,0.776110112217047,3.23351989399263,4.53854592402766,3.87092473160687,4.16471891612392,2.78047249225598,1.74126083261083,1.85203922767149,2.18937693500343,0,0.51469581422943,0,1.65700618028402,0.938104239924385,0.900310307305074,0.946978942340841,0,0.925602677324269,0.697601834251224,0.536546802799238,0.350296027101508,0.329119699826961,0.32833492815819,0.729619285912702,1.16959989940266,0.219550115291051,0.536825675041487,0.630869845692382,4.11618449517138,0,0,4.05247676016945,2.55460339046482,2.44848176511977,1.4117846723634,1.77902435075896,0.951128130562796,0,0.164698954724011,0,0.397912944082302,0.974820435595601,0.898819408654221,0,0,1.70701110857774,2.05647322697512,1.1270773567308,1.22190796707189,2.13347735884388,0.841629838683823,1.07502113111237,0.442830443938806,0.784993639206874,0.246794327843601,0,0.83422552858047,0.393117990226406,0.449724224769707,0.202860121388503,0.241177159752417,1.01850340712568,0.575392274901621,0.486405680325106,0,0,0,0,0.252578877947112,0,0,0.923765950833023,1.32643988239339,2.77040459951444,1.52770577197669,1.17345124144251,2.51259386162724,1.6663054862021,0.975668239288994,0.945810864637146,1.10732344824387,1.59454768657487,1.14704320301017,0.863424909329478,1.01254341007058,0,0,0.491764273019036,0.551873492609465,3.85321415970701,3.16471553798949,0.655739781506702,0,2.52406575533005,3.51394869866975,3.87762115919038,1.67278158566786,5.34716817797746,4.81230102341015,3.23848561339915,2.92255857911312,6.7198922250909,2.57057053137446,1.27746076687442,1.95872164033981,2.44330439030364,1.97964147567043,0,0.728341908464944,0.302323556964751,0.943025398779491,0.885905678642318,3.68922177532713,1.03371317267288,0.727067458955011,1.06949213515416,0,0,0,2.38307724027652,4.68158844481407,4.65691261617916,3.42939256050548,2.6601035046341,3.92411398724555,2.30368628842969,1.8267896946876,0.23467170806371,0.42366414172764,0,0.98931751764888,1.13025098687134,1.44751019827574,1.19372344003136,0.656563598980245,0.291480836629851,3.15223013417866,0.170870880797853,0.82554747185289,1.29636169158798,0.565105371014073,0.136694227721025,0.228778173206523,0.679913719975421,0.69975726161829,0.276399947608848,0,3.79603192297362,2.23651413839534,1.51207477150522,1.67270636811575,0.87345025498471,0.944050424693745,0.661227645802687,0.785267825952089,0.518459893167171,0,0.56369293868419,3.28936401296753,1.32366792365678,1.16670713006429,1.03327858782185,1.18269287843545,1.5256441023948,0.781226309063701,1.04859344425711,0.483168241652012,0,0,1.01362607645082,0.410843828659309,0,0.537080087002444,0.596044064343795,0.120195449519969,0.738447635872886,0.100966449948148,0.0762068066549998,0.201652370273681,0.292373642219257,0.192423683280659,0.116876902181569,0.226730383615211,0.443971906748129,0.358855426437903,0.167884616364078,0.772758376128762,1.31377732815827,1.83151624267265,0.857473516316263,0,3.3885110557024,0.920650473014354,0.572895513439397,1.89038500578056,2.05524755931193,3.0215755895588,2.02506750069542,1.80128481289688,1.35942722695261,0.51776031175182,1.86817225651518,8.37952234142165,2.73173769206615,1.94485373654635,1.46729213839588,1.47074806760011,0.888986911206461,2.47242068686673,1.92551525755089,1.26348605881899,1.77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| |||
|short_description=p3@Nlgn2 | |||
}} |
Revision as of 19:45, 3 August 2015
Short description: | p3@Nlgn2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Nlgn2_5end |
Coexpression cluster: | MCL_coexpression_mm9:108 |
Association with transcript: | -219bp_to_ENSMUST00000108634, uc007jrx.1_5end |
EntrezGene: | 216856 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.93e-17 | 33 |
neuronal stem cell | 1.93e-17 | 33 |
neuroblast | 1.93e-17 | 33 |
electrically signaling cell | 1.93e-17 | 33 |
ectodermal cell | 6.90e-16 | 44 |
neurectodermal cell | 6.90e-16 | 44 |
neural cell | 8.74e-16 | 43 |
electrically responsive cell | 4.89e-15 | 39 |
electrically active cell | 4.89e-15 | 39 |
CNS neuron (sensu Vertebrata) | 1.04e-12 | 23 |
neuroblast (sensu Vertebrata) | 1.04e-12 | 23 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 4.65e-24 | 73 |
nervous system | 2.46e-23 | 75 |
ectoderm-derived structure | 7.79e-22 | 95 |
ectoderm | 7.79e-22 | 95 |
presumptive ectoderm | 7.79e-22 | 95 |
neurectoderm | 2.13e-20 | 64 |
neural plate | 2.13e-20 | 64 |
presumptive neural plate | 2.13e-20 | 64 |
ecto-epithelium | 6.61e-18 | 73 |
regional part of nervous system | 1.14e-16 | 54 |
neural tube | 3.03e-16 | 52 |
neural rod | 3.03e-16 | 52 |
future spinal cord | 3.03e-16 | 52 |
neural keel | 3.03e-16 | 52 |
brain | 1.31e-13 | 47 |
future brain | 1.31e-13 | 47 |
regional part of brain | 3.24e-13 | 46 |
pre-chordal neural plate | 3.84e-13 | 49 |
structure with developmental contribution from neural crest | 2.99e-11 | 92 |
anterior neural tube | 8.65e-11 | 40 |
regional part of forebrain | 2.51e-10 | 39 |
forebrain | 2.51e-10 | 39 |
future forebrain | 2.51e-10 | 39 |
gray matter | 1.10e-08 | 34 |