UBERON:0005631: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=extraembryonic membrane | |name=extraembryonic membrane | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0004716;;UBERON:0016887 | |part_of=UBERON:0004716;;UBERON:0016887 | ||
Latest revision as of 17:54, 12 September 2014
| Name: | extraembryonic membrane | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Intrinsic membrane that arises from embryonic germ layers and grow to surround the developing embryo." [ISBN10:0073040584] | ||
| Xrefs: |
| ||
| Comments: | AO notes: EHDAA2 is a mereological sum. Taxon notes: stuctures homologous to the four extraembryonic membranes appear in mammals [ISBN10:0073040584 "Vertebrates, Kardong"] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000158(membranous layer),UBERON:0000478(extraembryonic structure) |
|---|---|
| part_of: | UBERON:0004716(conceptus),UBERON:0016887(entire extraembryonic component) |
Children
| is a: | UBERON:0000305 (amnion),UBERON:0001040 (yolk sac),UBERON:0003124 (chorion),UBERON:0004340 (allantois) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11533-120A3 (Amniotic Epithelial Cells, donor1)
- 11547-120B8 (Mesenchymal Stem Cells - amniotic membrane, donor1)
- 11613-122A2 (Amniotic Epithelial Cells, donor2)
- 11627-122B7 (Mesenchymal Stem Cells - amniotic membrane, donor2)
- 11694-123A2 (Amniotic Epithelial Cells, donor3)
- 12235-129G3 (amniotic membrane cells, donor1)
- 12236-129G4 (amniotic membrane cells, donor2)
- 12237-129G5 (amniotic membrane cells, donor3)
- 12238-129G6 (chorionic membrane cells, donor1)
- 12239-129G7 (chorionic membrane cells, donor2)
... further results Mouse (Mus musculus)
- 11533-120A3 (Amniotic Epithelial Cells, donor1)
- 11547-120B8 (Mesenchymal Stem Cells - amniotic membrane, donor1)
- 11613-122A2 (Amniotic Epithelial Cells, donor2)
- 11627-122B7 (Mesenchymal Stem Cells - amniotic membrane, donor2)
- 11694-123A2 (Amniotic Epithelial Cells, donor3)
- 12235-129G3 (amniotic membrane cells, donor1)
- 12236-129G4 (amniotic membrane cells, donor2)
- 12237-129G5 (amniotic membrane cells, donor3)
- 12238-129G6 (chorionic membrane cells, donor1)
- 12239-129G7 (chorionic membrane cells, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005631 (extraembryonic membrane), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 7.64e-155 | FFCP PHASE2:Hg19::chr3:55384975..55384986,-#_560813053f1cb718103d113871c1458d | p1@ENST00000469806 |
| 7.64e-155 | FFCP PHASE1:Hg19::chr3:55384975..55384986,-#_560813053f1cb718103d113871c1458d | p1@ENST00000469806 |
| 6.02e-144 | FFCP PHASE2:Hg19::chr11:8857295..8857310,-#_ecf70f08679bca5e12b7a5395346d1d3 | p21@ST5 |
| 6.02e-144 | FFCP PHASE1:Hg19::chr11:8857295..8857310,-#_ecf70f08679bca5e12b7a5395346d1d3 | p21@ST5 |
| 7.71e-144 | FFCP PHASE1:Hg19::chr11:8857248..8857269,-#_b7d1ba60b9d1b1242f6eb055d0ac599f | p16@ST5 |
| 7.71e-144 | FFCP PHASE2:Hg19::chr11:8857248..8857269,-#_b7d1ba60b9d1b1242f6eb055d0ac599f | p16@ST5 |
| 6.53e-141 | FFCP PHASE1:Hg19::chr2:237683156..237683171,+#_3e80101386e55bb2ae4fef684a2c4dc1 | p@chr2:237683156..237683171, + |
| 6.53e-141 | FFCP PHASE2:Hg19::chr2:237683156..237683171,+#_3e80101386e55bb2ae4fef684a2c4dc1 | p@chr2:237683156..237683171, + |
| 1.35e-139 | FFCP PHASE1:Hg19::chr19:36592982..36592993,+#_977ea57a64499897b8e8dc2296fcc22e | p@chr19:36592982..36592993, + |
| 1.35e-139 | FFCP PHASE2:Hg19::chr19:36592982..36592993,+#_977ea57a64499897b8e8dc2296fcc22e | p@chr19:36592982..36592993, + |
| 1.05e-134 | FFCP PHASE2:Hg19::chr11:8857215..8857232,-#_32a3586c4570ba900f10d37a259aa63a | p17@ST5 |
| 1.05e-134 | FFCP PHASE1:Hg19::chr11:8857215..8857232,-#_32a3586c4570ba900f10d37a259aa63a | p17@ST5 |
| 1.43e-129 | FFCP PHASE1:Hg19::chr15:68344995..68345013,+#_45b944d62ac0b7092c01520e182c43e2 | p@chr15:68344995..68345013, + |
| 1.43e-129 | FFCP PHASE2:Hg19::chr15:68344995..68345013,+#_45b944d62ac0b7092c01520e182c43e2 | p@chr15:68344995..68345013, + |
| 1.6e-126 | FFCP PHASE2:Hg19::chr2:237683212..237683239,+#_3a8f462c1904101a6f47476655b96aed | p@chr2:237683212..237683239, + |
| 1.6e-126 | FFCP PHASE1:Hg19::chr2:237683212..237683239,+#_3a8f462c1904101a6f47476655b96aed | p@chr2:237683212..237683239, + |
| 1.01e-125 | FFCP PHASE1:Hg19::chr2:25862154..25862172,-#_08ac73775acaadb7b8b677477fa6f32d | p14@DTNB |
| 1.01e-125 | FFCP PHASE2:Hg19::chr2:25862154..25862172,-#_08ac73775acaadb7b8b677477fa6f32d | p14@DTNB |
| 6.97e-121 | FFCP PHASE1:Hg19::chr2:237682954..237682971,+#_d14bf4ab16a929bb776170ab6bf52e79 | p@chr2:237682954..237682971, + |
| 6.97e-121 | FFCP PHASE2:Hg19::chr2:237682954..237682971,+#_d14bf4ab16a929bb776170ab6bf52e79 | p@chr2:237682954..237682971, + |
| 8.75e-121 | FFCP PHASE1:Hg19::chr2:237682990..237683009,+#_89c9efc3ed541b108eceab30ad0b8512 | p@chr2:237682990..237683009, + |
| 8.75e-121 | FFCP PHASE2:Hg19::chr2:237682990..237683009,+#_89c9efc3ed541b108eceab30ad0b8512 | p@chr2:237682990..237683009, + |
| 8.22e-119 | FFCP PHASE2:Hg19::chr19:36592925..36592948,+#_58ac5b65ef803875fe2dd6f3868e63f5 | p@chr19:36592925..36592948, + |
| 8.22e-119 | FFCP PHASE1:Hg19::chr19:36592925..36592948,+#_58ac5b65ef803875fe2dd6f3868e63f5 | p@chr19:36592925..36592948, + |
| 2.31e-113 | FFCP PHASE1:Hg19::chr18:6286777..6286797,+#_3108a72a1c438b988571c282d60a6360 | p@chr18:6286777..6286797, + |
| 2.31e-113 | FFCP PHASE2:Hg19::chr18:6286777..6286797,+#_3108a72a1c438b988571c282d60a6360 | p@chr18:6286777..6286797, + |
| 7.03e-112 | FFCP PHASE2:Hg19::chr2:237683203..237683210,+#_8a6dffd383b7815a199cd3d3e35b6e0b | p@chr2:237683203..237683210, + |
| 7.03e-112 | FFCP PHASE1:Hg19::chr17:2278441..2278454,+#_8a6dffd383b7815a199cd3d3e35b6e0b | p13@SGSM2 |
| 7.03e-112 | FFCP PHASE2:Hg19::chr17:2278441..2278454,+#_8a6dffd383b7815a199cd3d3e35b6e0b | p13@SGSM2 |
| 7.03e-112 | FFCP PHASE1:Hg19::chr2:237683203..237683210,+#_8a6dffd383b7815a199cd3d3e35b6e0b | p@chr2:237683203..237683210, + |
| 7.87e-108 | FFCP PHASE1:Hg19::chr11:1946293..1946319,+#_4706c6d313badab34516fdbd3653f09a | p11@TNNT3 |
| 7.87e-108 | FFCP PHASE2:Hg19::chr11:1946293..1946319,+#_4706c6d313badab34516fdbd3653f09a | p11@TNNT3 |
| 3.01e-103 | FFCP PHASE1:Hg19::chr6:12161831..12161855,+#_74d6cc8748d487ede0fcb2ad5985482a | p@chr6:12161831..12161855, + |
| 3.01e-103 | FFCP PHASE2:Hg19::chr6:12161831..12161855,+#_74d6cc8748d487ede0fcb2ad5985482a | p@chr6:12161831..12161855, + |
| 4.29e-103 | FFCP PHASE2:Hg19::chr20:61287795..61287809,+#_cdc2150fa72a2b5ab6744055a5f41d5d | p4@SLCO4A1 |
| 4.29e-103 | FFCP PHASE1:Hg19::chr20:61287795..61287809,+#_cdc2150fa72a2b5ab6744055a5f41d5d | p4@SLCO4A1 |
| 4.86e-100 | FFCP PHASE2:Hg19::chr13:43636294..43636306,+#_63acbdc17969d610febd2c338e34067b | p@chr13:43636294..43636306, + |
| 4.86e-100 | FFCP PHASE1:Hg19::chr13:43636294..43636306,+#_63acbdc17969d610febd2c338e34067b | p@chr13:43636294..43636306, + |
| 1.22e-99 | FFCP PHASE1:Hg19::chr19:36592910..36592917,+#_feacc4900ac2e0262ffbcbbcf06cfc54 | p@chr19:36592910..36592917, + |
| 1.22e-99 | FFCP PHASE1:Hg19::chr10:134227398..134227410,+#_feacc4900ac2e0262ffbcbbcf06cfc54 | p@chr10:134227398..134227410, + |
| 1.22e-99 | FFCP PHASE2:Hg19::chr10:134227398..134227410,+#_feacc4900ac2e0262ffbcbbcf06cfc54 | p@chr10:134227398..134227410, + |
| 1.22e-99 | FFCP PHASE2:Hg19::chr19:36592910..36592917,+#_feacc4900ac2e0262ffbcbbcf06cfc54 | p@chr19:36592910..36592917, + |
| 1.38e-99 | FFCP PHASE2:Hg19::chr2:191897854..191897865,-#_0a2a40f771beb1bcde4f0de93bcc0ff0 | p@chr2:191897854..191897865, - |
| 1.38e-99 | FFCP PHASE1:Hg19::chr2:191897854..191897865,-#_0a2a40f771beb1bcde4f0de93bcc0ff0 | p@chr2:191897854..191897865, - |
| 1.57e-99 | FFCP PHASE1:Hg19::chr17:2278481..2278491,+#_3b3f6801ae987a7b3fc5b25f1ef7cdf3 | p14@SGSM2 |
| 1.57e-99 | FFCP PHASE2:Hg19::chr17:2278481..2278491,+#_3b3f6801ae987a7b3fc5b25f1ef7cdf3 | p14@SGSM2 |
| 2.03e-99 | FFCP PHASE1:Hg19::chr6:31083761..31083775,-#_f72b0a2c4acb3a95fbc7bed6df1be05f | p@chr6:31083761..31083775, - |
| 2.03e-99 | FFCP PHASE2:Hg19::chr6:31083761..31083775,-#_f72b0a2c4acb3a95fbc7bed6df1be05f | p@chr6:31083761..31083775, - |
| 2.63e-99 | FFCP PHASE1:Hg19::chr2:237682972..237682977,+#_426e9fb720f96c0d1f8c79c4d896d858 | p@chr2:237682972..237682977, + |
| 2.63e-99 | FFCP PHASE2:Hg19::chr2:237682972..237682977,+#_426e9fb720f96c0d1f8c79c4d896d858 | p@chr2:237682972..237682977, + |
| 4.6e-98 | FFCP PHASE2:Hg19::chr10:131344593..131344605,+#_5e4866fc74d882dcb8cb6f953f25186b | p@chr10:131344593..131344605, + |
| 4.6e-98 | FFCP PHASE1:Hg19::chr20:61288222..61288232,+#_5e4866fc74d882dcb8cb6f953f25186b | p14@SLCO4A1 |
| 4.6e-98 | FFCP PHASE2:Hg19::chrX:48374277..48374289,+#_5e4866fc74d882dcb8cb6f953f25186b | p@chrX:48374277..48374289, + |
| 4.6e-98 | FFCP PHASE1:Hg19::chr9:88126069..88126080,-#_5e4866fc74d882dcb8cb6f953f25186b | p@chr9:88126069..88126080, - |
| 4.6e-98 | FFCP PHASE1:Hg19::chr20:61288249..61288259,+#_5e4866fc74d882dcb8cb6f953f25186b | p12@SLCO4A1 |
| 4.6e-98 | FFCP PHASE2:Hg19::chr9:88126069..88126080,-#_5e4866fc74d882dcb8cb6f953f25186b | p@chr9:88126069..88126080, - |
| 4.6e-98 | FFCP PHASE2:Hg19::chr20:61288222..61288232,+#_5e4866fc74d882dcb8cb6f953f25186b | p14@SLCO4A1 |
| 4.6e-98 | FFCP PHASE2:Hg19::chr20:61288249..61288259,+#_5e4866fc74d882dcb8cb6f953f25186b | p12@SLCO4A1 |
| 4.6e-98 | FFCP PHASE1:Hg19::chr14:104202639..104202646,-#_5e4866fc74d882dcb8cb6f953f25186b | p@chr14:104202639..104202646, - |
| 4.6e-98 | FFCP PHASE2:Hg19::chr14:104202639..104202646,-#_5e4866fc74d882dcb8cb6f953f25186b | p@chr14:104202639..104202646, - |
| 4.6e-98 | FFCP PHASE1:Hg19::chr10:131344593..131344605,+#_5e4866fc74d882dcb8cb6f953f25186b | p@chr10:131344593..131344605, + |
| 4.6e-98 | FFCP PHASE1:Hg19::chrX:48374277..48374289,+#_5e4866fc74d882dcb8cb6f953f25186b | p@chrX:48374277..48374289, + |
| 1.4e-94 | FFCP PHASE1:Hg19::chr17:38875395..38875406,-#_dda8c08922caad45ec0db14fa5cf6800 | p2@KRT223P |
| 1.4e-94 | FFCP PHASE2:Hg19::chr17:38875395..38875406,-#_dda8c08922caad45ec0db14fa5cf6800 | p2@KRT223P |
| 7.56e-90 | FFCP PHASE2:Hg19::chr19:36592959..36592975,+#_2375bd6b641b9ee6f441c5aefb087e56 | p@chr19:36592959..36592975, + |
| 7.56e-90 | FFCP PHASE1:Hg19::chr19:36592959..36592975,+#_2375bd6b641b9ee6f441c5aefb087e56 | p@chr19:36592959..36592975, + |
| 1.9e-89 | FFCP PHASE1:Hg19::chr2:237683038..237683048,+#_4b8615ec8a2c6caa14e12894edc6e2d7 | p@chr2:237683038..237683048, + |
| 1.9e-89 | FFCP PHASE2:Hg19::chr2:237683038..237683048,+#_4b8615ec8a2c6caa14e12894edc6e2d7 | p@chr2:237683038..237683048, + |
| 1.43e-88 | FFCP PHASE2:Hg19::chr5:128301279..128301283,+#_3bab5686e2d82cc9b0b75e7d7abd07d2 | p5@SLC27A6 |
| 1.43e-88 | FFCP PHASE1:Hg19::chr5:128301279..128301283,+#_3bab5686e2d82cc9b0b75e7d7abd07d2 | p5@SLC27A6 |
| 1.36e-87 | FFCP PHASE1:Hg19::chr17:38875358..38875392,-#_222bdd70632e393e3208a1116aeb590e | p1@KRT223P |
| 1.36e-87 | FFCP PHASE2:Hg19::chr17:38875358..38875392,-#_222bdd70632e393e3208a1116aeb590e | p1@KRT223P |
| 2.47e-87 | FFCP PHASE2:Hg19::chr11:1949886..1949907,+#_d5ea88aa89ee09323a2fa901cab7eea6 | p@chr11:1949886..1949907, + |
| 2.47e-87 | FFCP PHASE1:Hg19::chr11:1949886..1949907,+#_d5ea88aa89ee09323a2fa901cab7eea6 | p@chr11:1949886..1949907, + |
| 2.93e-87 | FFCP PHASE2:Hg19::chr1:147232669..147232676,-#_f6e6ef0b41fbff632ebfd5a0000de579 | p4@GJA5 |
| 2.93e-87 | FFCP PHASE1:Hg19::chr1:147232669..147232676,-#_f6e6ef0b41fbff632ebfd5a0000de579 | p4@GJA5 |
| 8.19e-87 | FFCP PHASE1:Hg19::chr11:122288906..122288919,-#_023712146058fceec7dd6b6a1b14ff75 | p@chr11:122288906..122288919, - |
| 8.19e-87 | FFCP PHASE2:Hg19::chr11:122288906..122288919,-#_023712146058fceec7dd6b6a1b14ff75 | p@chr11:122288906..122288919, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr5:125523411..125523420,-#_5eea2626842173d34dcdc9c346c80264 | p24@Ncor2 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr7:17788842..17788851,+#_5eea2626842173d34dcdc9c346c80264 | p2@Psg29 |
| 1.58e-86 | FFCP PHASE1:Mm9::chrX:136335482..136335502,+#_5eea2626842173d34dcdc9c346c80264 | p3@Cldn2 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr5:114862554..114862564,+#_5eea2626842173d34dcdc9c346c80264 | p@chr5:114862554..114862564, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr9:111108246..111108253,+#_5eea2626842173d34dcdc9c346c80264 | p@chr9:111108246..111108253, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:33048652..33048685,+#_5eea2626842173d34dcdc9c346c80264 | p@chr13:33048652..33048685, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr7:17788797..17788806,+#_5eea2626842173d34dcdc9c346c80264 | p4@Psg29 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr1:71787899..71787904,-#_5eea2626842173d34dcdc9c346c80264 | p@chr1:71787899..71787904, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chrX:136335507..136335518,+#_5eea2626842173d34dcdc9c346c80264 | p5@Cldn2 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:61041994..61042014,-#_5eea2626842173d34dcdc9c346c80264 | p@chr13:61041994..61042014, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:27337674..27337690,+#_5eea2626842173d34dcdc9c346c80264 | p@chr13:27337674..27337690, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr14:102036767..102036774,-#_5eea2626842173d34dcdc9c346c80264 | p@chr14:102036767..102036774, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr1:71787899..71787904,-#_5eea2626842173d34dcdc9c346c80264 | p@chr1:71787899..71787904, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr9:57927144..57927163,+#_5eea2626842173d34dcdc9c346c80264 | p19@Stra6 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr5:114862554..114862564,+#_5eea2626842173d34dcdc9c346c80264 | p@chr5:114862554..114862564, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr7:17749305..17749310,+#_5eea2626842173d34dcdc9c346c80264 | p@chr7:17749305..17749310, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr6:48879890..48879896,+#_5eea2626842173d34dcdc9c346c80264 | p1@1600015I10Rik |
| 1.58e-86 | FFCP PHASE2:Mm9::chr5:125523411..125523420,-#_5eea2626842173d34dcdc9c346c80264 | p24@Ncor2 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:61105387..61105403,+#_5eea2626842173d34dcdc9c346c80264 | p@chr13:61105387..61105403, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:27341334..27341356,-#_5eea2626842173d34dcdc9c346c80264 | p@chr13:27341334..27341356, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr5:115211954..115211984,-#_5eea2626842173d34dcdc9c346c80264 | p@chr5:115211954..115211984, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chrX:141915185..141915200,-#_5eea2626842173d34dcdc9c346c80264 | p@chrX:141915185..141915200, - |
