UBERON:0004288: Difference between revisions
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|located_in= | |located_in= | ||
|name=skeleton | |name=skeleton | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001434 | |part_of=UBERON:0001434 | ||
Latest revision as of 17:45, 12 September 2014
| Name: | skeleton | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "all the bones and/or cartilaginous elements in the body. Together with the articular system, this comprises the skeletal system." [FMA:23875, UBERON:cjm, Wikipedia:Skeleton] | ||
| Xrefs: |
| ||
| Synonyms: |
"set of all bones" EXACT [] "set of bones of body" EXACT [] | ||
| Comments: | Note that the source FMA definition has been modified here to include cartilage skeletons. We may wish to introduce subclasses for bony/cartilage skeletons. | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000477(anatomical cluster) |
|---|---|
| disjoint_from: | UBERON:0004770(articular system) |
| part_of: | UBERON:0001434(skeletal system) |
Children
| part of: | UBERON:0005863 (cartilaginous condensation),UBERON:0005866 (pre-cartilage condensation),UBERON:0010912 (subdivision of skeleton) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
- 1350-25C3 (bone (os femoris), neonate N20)
- 1525-43A6 (bone (os femoris), neonate N16)
- 1985-43F5 (bone (os femoris), neonate N02)
- 56-12G2 (bone (os femoris), adult)
Mouse (Mus musculus)
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
- 1350-25C3 (bone (os femoris), neonate N20)
- 1525-43A6 (bone (os femoris), neonate N16)
- 1985-43F5 (bone (os femoris), neonate N02)
- 56-12G2 (bone (os femoris), adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004288 (skeleton), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_1e5a46a00cb84e51a124c87c983d473d | p14@C17orf67 |
| 5.42e-195 | FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_1e5a46a00cb84e51a124c87c983d473d | p14@C17orf67 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_8d34c09ac6557e076ffbce01439f2faa | p12@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_8d34c09ac6557e076ffbce01439f2faa | p12@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_8d34c09ac6557e076ffbce01439f2faa | p@chr8:57353655..57353662, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_8d34c09ac6557e076ffbce01439f2faa | p11@C17orf67 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_8d34c09ac6557e076ffbce01439f2faa | p@chr8:57353655..57353662, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_8d34c09ac6557e076ffbce01439f2faa | p11@C17orf67 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_8d34c09ac6557e076ffbce01439f2faa | p13@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_8d34c09ac6557e076ffbce01439f2faa | p13@C17orf67 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_a907e9f8eccb7fb0a9258453db3d31c6 | p14@MAB21L2 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_a907e9f8eccb7fb0a9258453db3d31c6 | p14@MAB21L2 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_a907e9f8eccb7fb0a9258453db3d31c6 | p@chr5:75912402..75912418, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_a907e9f8eccb7fb0a9258453db3d31c6 | p@chr5:75912402..75912418, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_a0faf0c47a29ec50cafabea24047290d | p@chr4:151505582..151505614, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_a0faf0c47a29ec50cafabea24047290d | p@chr4:151505582..151505614, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_1ebe0985513b9a63d6bcd9ce00b6e44d | p@chr8:57354278..57354286, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_1ebe0985513b9a63d6bcd9ce00b6e44d | p9@C17orf67 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_1ebe0985513b9a63d6bcd9ce00b6e44d | p9@C17orf67 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_1ebe0985513b9a63d6bcd9ce00b6e44d | p17@RSRC1 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_1ebe0985513b9a63d6bcd9ce00b6e44d | p17@RSRC1 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_1ebe0985513b9a63d6bcd9ce00b6e44d | p@chr8:57354278..57354286, + |
| 2.42e-50 | FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_fb260202668d1b0393ce9d5eefa1aac0 | p@chr8:57802672..57802682, - |
| 2.42e-50 | FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_fb260202668d1b0393ce9d5eefa1aac0 | p@chr8:57802672..57802682, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_3bf64b8262b0682ded6fa600e3e645b6 | p1@AK123925 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_3bf64b8262b0682ded6fa600e3e645b6 | p7@ALX1 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_3bf64b8262b0682ded6fa600e3e645b6 | p1@AK123925 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_3bf64b8262b0682ded6fa600e3e645b6 | p@chr5:75913767..75913778, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_3bf64b8262b0682ded6fa600e3e645b6 | p@chr5:75913767..75913778, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_3bf64b8262b0682ded6fa600e3e645b6 | p7@ALX1 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_2bbe79cab8e8dd02b65794dc27bcc3d9 | p@chr2:33519090..33519092, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_2bbe79cab8e8dd02b65794dc27bcc3d9 | p@chr2:33519090..33519092, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_2bbe79cab8e8dd02b65794dc27bcc3d9 | p23@FLT1 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_2bbe79cab8e8dd02b65794dc27bcc3d9 | p23@FLT1 |
| 3.4e-49 | FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_b5ffd70e9a29cdf04b6063dea703a81a | p26@Myo18a |
| 3.4e-49 | FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_b5ffd70e9a29cdf04b6063dea703a81a | p26@Myo18a |
| 4.96e-49 | FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_dadf23c44c832b6001afc5ada4bc8cef | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_dadf23c44c832b6001afc5ada4bc8cef | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_dadf23c44c832b6001afc5ada4bc8cef | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_dadf23c44c832b6001afc5ada4bc8cef | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_dadf23c44c832b6001afc5ada4bc8cef | p@chr9:21934585..21934591, - |
| 4.96e-49 | FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_dadf23c44c832b6001afc5ada4bc8cef | p@chr9:21934585..21934591, - |
| 3.15e-44 | FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_5ab5abd6003e17f9aab93088091871d8 | p@chr6:51525810..51525817, + |
| 3.15e-44 | FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_5ab5abd6003e17f9aab93088091871d8 | p@chr6:51525810..51525817, + |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_bd3e0db4295b28f49b4bcdfd0f904f4e | p@chr8:57354143..57354152, + |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_bd3e0db4295b28f49b4bcdfd0f904f4e | p@chr8:57353779..57353790, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_bd3e0db4295b28f49b4bcdfd0f904f4e | p@chr8:57353779..57353790, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_bd3e0db4295b28f49b4bcdfd0f904f4e | p@chr8:57354143..57354152, + |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_bd3e0db4295b28f49b4bcdfd0f904f4e | p@chr8:57353666..57353675, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_bd3e0db4295b28f49b4bcdfd0f904f4e | p@chr8:57353666..57353675, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_c6f8125c89ebb5fa561d5e8d1d458a16 | p8@LHX8 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_c6f8125c89ebb5fa561d5e8d1d458a16 | p12@FAM65C |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_c6f8125c89ebb5fa561d5e8d1d458a16 | p2@TAS1R1 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_c6f8125c89ebb5fa561d5e8d1d458a16 | p12@FAM65C |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_c6f8125c89ebb5fa561d5e8d1d458a16 | p2@TAS1R1 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_c6f8125c89ebb5fa561d5e8d1d458a16 | p8@LHX8 |
| 2.21e-40 | FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_43c44c17f3de3e86085da7e1fc389849 | p@chr16:67687543..67687559, - |
| 2.21e-40 | FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_43c44c17f3de3e86085da7e1fc389849 | p@chr5:75912831..75912842, - |
| 2.21e-40 | FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_43c44c17f3de3e86085da7e1fc389849 | p@chr16:67687543..67687559, - |
| 2.21e-40 | FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_43c44c17f3de3e86085da7e1fc389849 | p@chr5:75912831..75912842, - |
| 3.3e-40 | FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_7a9611ad6bdeabc5c68faeb4199bdf81 | p@chr6:46190219..46190230, - |
| 3.3e-40 | FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_7a9611ad6bdeabc5c68faeb4199bdf81 | p@chr6:46190219..46190230, - |
| 3.3e-40 | FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_7a9611ad6bdeabc5c68faeb4199bdf81 | p@chr9:125165007..125165016, + |
| 3.3e-40 | FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_7a9611ad6bdeabc5c68faeb4199bdf81 | p@chr9:125165007..125165016, + |
| 9.78e-40 | FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_51fe20f8d6ab0ea0ffcdbfa5138043fc | p@chr19:4876870..4876880, - |
| 9.78e-40 | FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_51fe20f8d6ab0ea0ffcdbfa5138043fc | p@chr19:4876870..4876880, - |
| 1.15e-39 | FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_5c7ba523c2951387afea4be5dd8312fc | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_5c7ba523c2951387afea4be5dd8312fc | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_5c7ba523c2951387afea4be5dd8312fc | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_5c7ba523c2951387afea4be5dd8312fc | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_5c7ba523c2951387afea4be5dd8312fc | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_5c7ba523c2951387afea4be5dd8312fc | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_5c7ba523c2951387afea4be5dd8312fc | p@chr1:174140324..174140335, - |
| 1.15e-39 | FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_5c7ba523c2951387afea4be5dd8312fc | p@chr1:174140324..174140335, - |
| 1.55e-39 | FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_924e38b664f8472087fdcf6e56c15a48 | p@chr1:174143249..174143260, - |
| 1.55e-39 | FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_924e38b664f8472087fdcf6e56c15a48 | p@chr1:174143249..174143260, - |
| 3.03e-39 | FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_04ae1fbf69dbb55b5aec06691ded793b | p@chr6:51525869..51525891, + |
| 3.03e-39 | FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_04ae1fbf69dbb55b5aec06691ded793b | p@chr6:51525869..51525891, + |
| 9.31e-39 | FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_9fa431d9437ad7c68a2f4791cd597db9 | p3@Asb16 |
| 9.31e-39 | FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_9fa431d9437ad7c68a2f4791cd597db9 | p3@Asb16 |
| 2.41e-35 | FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_eebd0d4cc04b1b44272bbec8e7002fdb | p@chr7:133604286..133604297, - |
| 2.41e-35 | FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_eebd0d4cc04b1b44272bbec8e7002fdb | p@chr7:133604286..133604297, - |
| 2.95e-35 | FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_e52e1afc12ffb4a1a30c4ac29a2ad361 | p5@Pla2g5 |
| 2.95e-35 | FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_e52e1afc12ffb4a1a30c4ac29a2ad361 | p5@Pla2g5 |
| 1.84e-34 | FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_bc7e20a76449c0c5afa8db55265c7c9d | p@chr10:15760985..15760992, - |
| 1.84e-34 | FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_bc7e20a76449c0c5afa8db55265c7c9d | p5@PENK |
| 1.84e-34 | FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_bc7e20a76449c0c5afa8db55265c7c9d | p5@PENK |
| 1.84e-34 | FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_bc7e20a76449c0c5afa8db55265c7c9d | p@chr10:15760985..15760992, - |
| 1.84e-34 | FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_bc7e20a76449c0c5afa8db55265c7c9d | p4@CPZ |
| 1.84e-34 | FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_bc7e20a76449c0c5afa8db55265c7c9d | p4@CPZ |
| 2.58e-34 | FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_557aaa734b94a751f979745b4373a5dd | p9@SIX1 |
| 2.58e-34 | FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_557aaa734b94a751f979745b4373a5dd | p9@SIX1 |
| 5.05e-34 | FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_5adfade046b01a2c4f265ab286ca901c | p@chr6:134327986..134327991, - |
| 5.05e-34 | FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_5adfade046b01a2c4f265ab286ca901c | p@chr6:134327986..134327991, - |
| 7.06e-34 | FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_f2f53f4e70f32ff9e53f53e254a8c95f | p@chr8:57353676..57353688, - |
| 7.06e-34 | FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_f2f53f4e70f32ff9e53f53e254a8c95f | p@chr8:57353676..57353688, - |
| 7.06e-34 | FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_f2f53f4e70f32ff9e53f53e254a8c95f | p@chr13:58291223..58291226, + |
| 7.06e-34 | FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_f2f53f4e70f32ff9e53f53e254a8c95f | p@chr13:58291223..58291226, + |
| 9.53e-34 | FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_444345b06b86a21d8a502cc0cd27e3e7 | p2@uc009mdq.1 |
| 9.53e-34 | FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_444345b06b86a21d8a502cc0cd27e3e7 | p2@uc009mdq.1 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical cluster that consists of all the skeletal elements (eg., bone, cartilage, and teeth) of the body.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
