UBERON:0004086: Difference between revisions
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|located_in= | |located_in= | ||
|name=brain ventricle | |name=brain ventricle | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0005282 | |part_of=UBERON:0005282 | ||
Latest revision as of 17:43, 12 September 2014
| Name: | brain ventricle | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "one of the system of communicating cavities in the brain that are continuous with the central canal of the spinal cord, that like it are derived from the medullary canal of the embryo, that are lined with an epithelial ependyma, and that contain a serous fluid" [] | ||
| Xrefs: |
| ||
| Synonyms: |
"cerebral ventricle" EXACT [HP:0002118] "region of ventricular system of brain" EXACT [FMA:78447] | ||
| Comments: | Note that FMA draws the distinction between e.g. 'fourth ventricle' and 'cavity of fourth ventricle'. The former is a cavity, and part of the latter, which is a region. The superclass of 'fourth ventricle' is_a 'region of ventricular system of the brain'. We place this class here, although it is not equivalent to ventricles, as it includes ventricle bodies. |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0003947(brain ventricle/choroid plexus),UBERON:0005358(ventricle of nervous system) |
|---|---|
| part_of: | UBERON:0005282(ventricular system of brain) |
Children
| is a: | UBERON:0002285 (telencephalic ventricle) |
|---|---|
| part of: | UBERON:0001886 (choroid plexus) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11492-119E7 (Fibroblast - Choroid Plexus, donor1)
- 11572-120E6 (Fibroblast - Choroid Plexus, donor2)
- 11653-122E6 (Fibroblast - Choroid Plexus, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004086 (brain ventricle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:201708474..201708479,+#_4ceb2a2cfd6c84999820b7d9ff8e124b | p58@NAV1 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:201708474..201708479,+#_4ceb2a2cfd6c84999820b7d9ff8e124b | p58@NAV1 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:201708485..201708494,+#_4ceb2a2cfd6c84999820b7d9ff8e124b | p55@NAV1 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:201708485..201708494,+#_4ceb2a2cfd6c84999820b7d9ff8e124b | p55@NAV1 |
| 8.99e-131 | FFCP PHASE1:Hg19::chr8:24997361..24997368,-#_42721907d6ded837bc6cddea50db085e | p@chr8:24997361..24997368, - |
| 8.99e-131 | FFCP PHASE2:Hg19::chr8:24997361..24997368,-#_42721907d6ded837bc6cddea50db085e | p@chr8:24997361..24997368, - |
| 3.96e-66 | FFCP PHASE1:Hg19::chr17:75471711..75471726,+#_32bac25c1d8ecbf70c80130470c82b81 | p73@SEPT9 |
| 3.96e-66 | FFCP PHASE2:Hg19::chr17:75471711..75471726,+#_32bac25c1d8ecbf70c80130470c82b81 | p73@SEPT9 |
| 3.96e-66 | FFCP PHASE1:Hg19::chr3:146517344..146517356,+#_32bac25c1d8ecbf70c80130470c82b81 | p@chr3:146517344..146517356, + |
| 3.96e-66 | FFCP PHASE2:Hg19::chr3:146517344..146517356,+#_32bac25c1d8ecbf70c80130470c82b81 | p@chr3:146517344..146517356, + |
| 4.77e-57 | FFCP PHASE2:Hg19::chr12:15941738..15941768,+#_489783608387c4420fb2bfe0d3f47793 | p@chr12:15941738..15941768, + |
| 4.77e-57 | FFCP PHASE1:Hg19::chr12:15941738..15941768,+#_489783608387c4420fb2bfe0d3f47793 | p@chr12:15941738..15941768, + |
| 6.36e-57 | FFCP PHASE1:Hg19::chr5:149537789..149537803,-#_a82505ee4e75968e14c4b2ee5d2ae830 | p@chr5:149537789..149537803, - |
| 6.36e-57 | FFCP PHASE2:Hg19::chr5:149537789..149537803,-#_a82505ee4e75968e14c4b2ee5d2ae830 | p@chr5:149537789..149537803, - |
| 8.82e-51 | FFCP PHASE2:Hg19::chr10:105677427..105677438,-#_7f1a4ce1841042e97368ee62a21dd0fd | p7@OBFC1 |
| 8.82e-51 | FFCP PHASE1:Hg19::chr14:76072096..76072107,+#_7f1a4ce1841042e97368ee62a21dd0fd | p7@FLVCR2 |
| 8.82e-51 | FFCP PHASE1:Hg19::chr10:105677427..105677438,-#_7f1a4ce1841042e97368ee62a21dd0fd | p7@OBFC1 |
| 8.82e-51 | FFCP PHASE2:Hg19::chr14:76072096..76072107,+#_7f1a4ce1841042e97368ee62a21dd0fd | p7@FLVCR2 |
| 5.15e-50 | FFCP PHASE2:Hg19::chr16:65159735..65159744,-#_409e704cd4e0befe607ce699a117f469 | p@chr16:65159735..65159744, - |
| 5.15e-50 | FFCP PHASE1:Hg19::chr16:65159735..65159744,-#_409e704cd4e0befe607ce699a117f469 | p@chr16:65159735..65159744, - |
| 1.22e-44 | FFCP PHASE1:Hg19::chr5:158523468..158523481,-#_353439c320d0ae693a2433cc5ffb7e3e | p20@EBF1 |
| 1.22e-44 | FFCP PHASE2:Hg19::chr5:158523468..158523481,-#_353439c320d0ae693a2433cc5ffb7e3e | p20@EBF1 |
| 1.53e-44 | FFCP PHASE1:Hg19::chr11:60680190..60680212,+#_b3669168bc5a11448f0289c0aa4e7267 | p@chr11:60680190..60680212, + |
| 1.53e-44 | FFCP PHASE2:Hg19::chr11:60680190..60680212,+#_b3669168bc5a11448f0289c0aa4e7267 | p@chr11:60680190..60680212, + |
| 5.99e-41 | FFCP PHASE1:Hg19::chr9:132390755..132390781,+#_8c48fbdf149ef2189fd816cc66b2698f | p7@METTL11A |
| 5.99e-41 | FFCP PHASE2:Hg19::chr9:132390755..132390781,+#_8c48fbdf149ef2189fd816cc66b2698f | p7@METTL11A |
| 8.98e-41 | FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_c4763dcc042fd83413dfbcb859f8b6a4 | p@chr1:19778678..19778689, - |
| 8.98e-41 | FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_c4763dcc042fd83413dfbcb859f8b6a4 | p@chr1:19778678..19778689, - |
| 1.34e-40 | FFCP PHASE2:Hg19::chr4:111397216..111397250,+#_fae5055221bcfd4f60e16e85335a02b4 | p8@ENPEP |
| 1.34e-40 | FFCP PHASE1:Hg19::chr4:111397216..111397250,+#_fae5055221bcfd4f60e16e85335a02b4 | p8@ENPEP |
| 9.84e-37 | FFCP PHASE2:Hg19::chr11:44331735..44331747,-#_26960fe7bbba2a746cbe729ba4fe7461 | p3@ALX4 |
| 9.84e-37 | FFCP PHASE1:Hg19::chr11:44331735..44331747,-#_26960fe7bbba2a746cbe729ba4fe7461 | p3@ALX4 |
| 1.18e-36 | FFCP PHASE1:Hg19::chr1:236203048..236203055,-#_88f5c3b9c43a0e41b89063e0fad55cae | p@chr1:236203048..236203055, - |
| 1.18e-36 | FFCP PHASE2:Hg19::chr1:236203048..236203055,-#_88f5c3b9c43a0e41b89063e0fad55cae | p@chr1:236203048..236203055, - |
| 1.42e-36 | FFCP PHASE1:Hg19::chr6:72970377..72970387,+#_dd25db9a88382a2a013fd9868a556b96 | p20@RIMS1 |
| 1.42e-36 | FFCP PHASE2:Hg19::chr6:72970377..72970387,+#_dd25db9a88382a2a013fd9868a556b96 | p20@RIMS1 |
| 1.7e-36 | FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_fddba704f1ee190a584c758f93a4afe2 | p@chr14:87636652..87636657, - |
| 1.7e-36 | FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_fddba704f1ee190a584c758f93a4afe2 | p@chr14:87636652..87636657, - |
| 2.04e-36 | FFCP PHASE2:Hg19::chr14:61654271..61654282,+#_88e26e7f735c27ef107f33d062da86f5 | p30@PRKCH |
| 2.04e-36 | FFCP PHASE1:Hg19::chr14:61654271..61654282,+#_88e26e7f735c27ef107f33d062da86f5 | p30@PRKCH |
| 1.11e-34 | FFCP PHASE1:Hg19::chr12:108732917..108732935,-#_d9160cdd3edb4fb5d515f3076350b8d6 | p5@CMKLR1 |
| 1.11e-34 | FFCP PHASE2:Hg19::chr12:108732917..108732935,-#_d9160cdd3edb4fb5d515f3076350b8d6 | p5@CMKLR1 |
| 5.04e-34 | FFCP PHASE1:Hg19::chr9:130830760..130830783,+#_5f8e752fb19e0777f79aba779957aac2 | p11@SLC25A25 |
| 5.04e-34 | FFCP PHASE2:Hg19::chr9:130830760..130830783,+#_5f8e752fb19e0777f79aba779957aac2 | p11@SLC25A25 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr8:128902610..128902630,+#_30557156af38deaf929136a54e9af9c1 | p17@PVT1 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr6:36906253..36906260,-#_30557156af38deaf929136a54e9af9c1 | p@chr6:36906253..36906260, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chr2:231988425..231988433,-#_30557156af38deaf929136a54e9af9c1 | p11@HTR2B |
| 7.05e-34 | FFCP PHASE2:Hg19::chr6:36906253..36906260,-#_30557156af38deaf929136a54e9af9c1 | p@chr6:36906253..36906260, - |
| 7.05e-34 | FFCP PHASE2:Hg19::chr2:231988425..231988433,-#_30557156af38deaf929136a54e9af9c1 | p11@HTR2B |
| 7.05e-34 | FFCP PHASE2:Hg19::chr8:128902610..128902630,+#_30557156af38deaf929136a54e9af9c1 | p17@PVT1 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr15:95869480..95869493,+#_30557156af38deaf929136a54e9af9c1 | p@chr15:95869480..95869493, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr15:95869480..95869493,+#_30557156af38deaf929136a54e9af9c1 | p@chr15:95869480..95869493, + |
| 1.37e-31 | FFCP PHASE1:Hg19::chr2:223536233..223536234,+#_35111f8d23f3f60083639d11677bc5a9 | p3@MOGAT1 |
| 1.37e-31 | FFCP PHASE2:Hg19::chr2:223536233..223536234,+#_35111f8d23f3f60083639d11677bc5a9 | p3@MOGAT1 |
| 4.71e-31 | FFCP PHASE1:Hg19::chr3:147127961..147127972,+#_38b4cc80830c4aa385396fae8b11e871 | p3@AB464362 |
| 4.71e-31 | FFCP PHASE2:Hg19::chr3:147127961..147127972,+#_38b4cc80830c4aa385396fae8b11e871 | p3@AB464362 |
| 4.71e-31 | FFCP PHASE1:Hg19::chr5:134260455..134260471,-#_38b4cc80830c4aa385396fae8b11e871 | p@chr5:134260455..134260471, - |
| 4.71e-31 | FFCP PHASE2:Hg19::chr5:134260455..134260471,-#_38b4cc80830c4aa385396fae8b11e871 | p@chr5:134260455..134260471, - |
| 6.96e-30 | FFCP PHASE1:Hg19::chr16:65159902..65159909,-#_c92d9c673d18a3485222796b5ce0d7f7 | p@chr16:65159902..65159909, - |
| 6.96e-30 | FFCP PHASE2:Hg19::chr16:65159902..65159909,-#_c92d9c673d18a3485222796b5ce0d7f7 | p@chr16:65159902..65159909, - |
| 1.08e-29 | FFCP PHASE1:Hg19::chr5:149537807..149537827,-#_fcb7fdcfb4474b6b8dd1ebcb1da8bcbb | p@chr5:149537807..149537827, - |
| 1.08e-29 | FFCP PHASE2:Hg19::chr5:149537807..149537827,-#_fcb7fdcfb4474b6b8dd1ebcb1da8bcbb | p@chr5:149537807..149537827, - |
| 9.09e-27 | FFCP PHASE1:Hg19::chr3:147124547..147124563,-#_c49da02d4b67c9e0b2c1bc2f0e36c76f | p6@ZIC4 |
| 9.09e-27 | FFCP PHASE2:Hg19::chr3:147124547..147124563,-#_c49da02d4b67c9e0b2c1bc2f0e36c76f | p6@ZIC4 |
| 1.67e-26 | FFCP PHASE2:Hg19::chr2:238066183..238066194,-#_0903d0cfab6abf05c7aa35b8b050fc69 | p@chr2:238066183..238066194, - |
| 1.67e-26 | FFCP PHASE1:Hg19::chr2:238066183..238066194,-#_0903d0cfab6abf05c7aa35b8b050fc69 | p@chr2:238066183..238066194, - |
| 4.08e-26 | FFCP PHASE1:Hg19::chr5:40910094..40910097,+#_1920c39efd24f06c43da94b04a6b940a | p@chr5:40910094..40910097, + |
| 4.08e-26 | FFCP PHASE2:Hg19::chr5:40910094..40910097,+#_1920c39efd24f06c43da94b04a6b940a | p@chr5:40910094..40910097, + |
| 5.56e-26 | FFCP PHASE2:Hg19::chr11:61634768..61634777,+#_7d352cffc25b6a7260c73f6f22cde8ee | p@chr11:61634768..61634777, + |
| 5.56e-26 | FFCP PHASE1:Hg19::chr11:61634768..61634777,+#_7d352cffc25b6a7260c73f6f22cde8ee | p@chr11:61634768..61634777, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr8:58658778..58658788,+#_853498457841394974b0d9cffeacddff | p2@ENST00000518934, p2@uc003xti.1 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr8:58658778..58658788,+#_853498457841394974b0d9cffeacddff | p2@ENST00000518934, p2@uc003xti.1 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr6:129504885..129504896,-#_cce73b04ecbf5625dcedecf842ea74e3 | p@chr6:129504885..129504896, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr6:129504885..129504896,-#_cce73b04ecbf5625dcedecf842ea74e3 | p@chr6:129504885..129504896, - |
| 1.44e-25 | FFCP PHASE1:Hg19::chr12:279773..279812,+#_a376a560524842bdf3f51de9c0466d31 | p@chr12:279773..279812, + |
| 1.44e-25 | FFCP PHASE1:Hg19::chr3:147127358..147127369,+#_a376a560524842bdf3f51de9c0466d31 | p16@ZIC1 |
| 1.44e-25 | FFCP PHASE2:Hg19::chr3:147127358..147127369,+#_a376a560524842bdf3f51de9c0466d31 | p16@ZIC1 |
| 1.44e-25 | FFCP PHASE2:Hg19::chr12:279773..279812,+#_a376a560524842bdf3f51de9c0466d31 | p@chr12:279773..279812, + |
| 2.37e-25 | FFCP PHASE1:Hg19::chr3:147112699..147112713,-#_614b061bb3e226d565e08ae76cf1fcd6 | p@chr3:147112699..147112713, - |
| 2.37e-25 | FFCP PHASE2:Hg19::chr3:147112699..147112713,-#_614b061bb3e226d565e08ae76cf1fcd6 | p@chr3:147112699..147112713, - |
| 1.15e-24 | FFCP PHASE1:Hg19::chr1:47903765..47903783,+#_5082c860d5227ee6b17e95e9733d4ebc | p5@FOXD2 |
| 1.15e-24 | FFCP PHASE2:Hg19::chr1:47903765..47903783,+#_5082c860d5227ee6b17e95e9733d4ebc | p5@FOXD2 |
| 1.45e-24 | FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_4f98eba952efc90500a2bd45dfde8e1f | p@chr9:16138889..16138902, - |
| 1.45e-24 | FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_4f98eba952efc90500a2bd45dfde8e1f | p@chr9:16138889..16138902, - |
| 2.97e-24 | FFCP PHASE1:Hg19::chr2:192128035..192128057,+#_fd6bdb41a144092557c2e89e2ead91d5 | p6@MYO1B |
| 2.97e-24 | FFCP PHASE2:Hg19::chr2:192128035..192128057,+#_fd6bdb41a144092557c2e89e2ead91d5 | p6@MYO1B |
| 3.34e-24 | FFCP PHASE1:Hg19::chr3:147088197..147088208,-#_b4410e388f9c1090de6ef878c0c8d2d7 | p@chr3:147088197..147088208, - |
| 3.34e-24 | FFCP PHASE2:Hg19::chr3:147088197..147088208,-#_b4410e388f9c1090de6ef878c0c8d2d7 | p@chr3:147088197..147088208, - |
| 5.35e-24 | FFCP PHASE1:Hg19::chr17:1013251..1013277,-#_4fe98b33b2065645ed79920e21075043 | p@chr17:1013251..1013277, - |
| 5.35e-24 | FFCP PHASE2:Hg19::chr17:1013251..1013277,-#_4fe98b33b2065645ed79920e21075043 | p@chr17:1013251..1013277, - |
| 1.01e-23 | FFCP PHASE1:Hg19::chr11:60640905..60640919,+#_ca7373887972d2ff03cbad2297e2d88a | p@chr11:60640905..60640919, + |
| 1.01e-23 | FFCP PHASE2:Hg19::chr11:60640905..60640919,+#_ca7373887972d2ff03cbad2297e2d88a | p@chr11:60640905..60640919, + |
| 1.42e-23 | FFCP PHASE1:Hg19::chr17:75446774..75446783,+#_61f7565032710fe2cd90729b1c75d437 | p49@SEPT9 |
| 1.42e-23 | FFCP PHASE2:Hg19::chr17:75446774..75446783,+#_61f7565032710fe2cd90729b1c75d437 | p49@SEPT9 |
| 3.49e-23 | FFCP PHASE2:Hg19::chr11:8832119..8832124,-#_51591b8972e3fafb7cc10b2dfaacae9a | p30@ST5 |
| 3.49e-23 | FFCP PHASE1:Hg19::chr11:8832119..8832124,-#_51591b8972e3fafb7cc10b2dfaacae9a | p30@ST5 |
| 6.84e-23 | FFCP PHASE1:Hg19::chr6:55739244..55739256,-#_7b748390d7f8e771f54aa3883457807e | p2@AB527577, p2@CU693346 |
| 6.84e-23 | FFCP PHASE2:Hg19::chr6:55739244..55739256,-#_7b748390d7f8e771f54aa3883457807e | p2@AB527577, p2@CU693346 |
| 2.06e-22 | FFCP PHASE1:Hg19::chr11:60610073..60610090,+#_ecd259b64c38fdd401a9773b6be055f8 | p6@CCDC86 |
| 2.06e-22 | FFCP PHASE2:Hg19::chr11:60610073..60610090,+#_ecd259b64c38fdd401a9773b6be055f8 | p6@CCDC86 |
