UBERON:0002600: Difference between revisions
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|located_in= | |located_in= | ||
|name=limbic lobe | |name=limbic lobe | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 17:33, 12 September 2014
| Name: | limbic lobe | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The limbic lobe (also known as the Cingulate) is a portion of the brain associated with functions such as olfaction and emotion. It contains parts of other lobes, including the frontal, parietal, and temporal. Its main components are the fornicate gyrus, the hippocampus, and the amygdala It is related to the term limbic system, but unlike that term, 'limbic lobe' is a part of the Terminologia Anatomica, and there is less disagreement over what is included in the 'limbic lobe' than there is over what is included in the 'limbic system'. [WP,unvetted]." [Wikipedia:Limbic_lobe] | ||
| Xrefs: |
| ||
| Synonyms: |
"fornicate gyrus" EXACT [FMA:72719] "grande lobe limbique of broca" EXACT [] "limbic lobe (carpenter)" EXACT [] "lobus limbicus" RELATED LATIN [Wikipedia:Limbic_lobe] | ||
| Alt_id: | UBERON:NIF_GrossAnatomy_birnlex_1128-FMA_72719 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0016526(lobe of cerebral hemisphere) |
|---|
Children
| part of: | UBERON:0001954 (Ammon's horn) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10153-102I9 (hippocampus, adult, donor10252)
- 10169-103B7 (hippocampus - adult, donor10196)
- 10363-105F3 (hippocampus, newborn, donor10223)
- 10374-105G5 (hippocampus, adult, donor10258)
- 11551-120C3 (Mouse Astrocytes - hippocampus, donor2)
- 11632-122C3 (Mouse Astrocytes - hippocampus, donor3)
- 11644-122D6 (Mouse Neurons - hippocampal, donor3)
- 11709-123B8 (Mouse Astrocytes - hippocampus, donor1)
- 11721-123D2 (Mouse Neurons - hippocampal, donor1)
- 11739-123F2 (Mouse Neurons - hippocampal, donor2)
... further results Mouse (Mus musculus)
- 10153-102I9 (hippocampus, adult, donor10252)
- 10169-103B7 (hippocampus - adult, donor10196)
- 10363-105F3 (hippocampus, newborn, donor10223)
- 10374-105G5 (hippocampus, adult, donor10258)
- 11551-120C3 (Mouse Astrocytes - hippocampus, donor2)
- 11632-122C3 (Mouse Astrocytes - hippocampus, donor3)
- 11644-122D6 (Mouse Neurons - hippocampal, donor3)
- 11709-123B8 (Mouse Astrocytes - hippocampus, donor1)
- 11721-123D2 (Mouse Neurons - hippocampal, donor1)
- 11739-123F2 (Mouse Neurons - hippocampal, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002600 (limbic lobe), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.68e-99 | FFCP PHASE2:Hg19::chr2:149881275..149881284,+#_e15f3afe11fc9f6139dd2112d6985f6f | p@chr2:149881275..149881284, + |
| 5.68e-99 | FFCP PHASE2:Hg19::chrX:148561320..148561329,-#_e15f3afe11fc9f6139dd2112d6985f6f | p@chrX:148561320..148561329, - |
| 5.68e-99 | FFCP PHASE1:Hg19::chr2:149881275..149881284,+#_e15f3afe11fc9f6139dd2112d6985f6f | p@chr2:149881275..149881284, + |
| 5.68e-99 | FFCP PHASE1:Hg19::chrX:148561320..148561329,-#_e15f3afe11fc9f6139dd2112d6985f6f | p@chrX:148561320..148561329, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:132937900..132937907,-#_c8ca1afcf63df10d8f1313c9bc1de7cf | p@chr6:132937900..132937907, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chrX:110464144..110464149,+#_c8ca1afcf63df10d8f1313c9bc1de7cf | p@chrX:110464144..110464149, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:187628574..187628585,+#_c8ca1afcf63df10d8f1313c9bc1de7cf | p@chr2:187628574..187628585, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chrX:110464144..110464149,+#_c8ca1afcf63df10d8f1313c9bc1de7cf | p@chrX:110464144..110464149, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:187628574..187628585,+#_c8ca1afcf63df10d8f1313c9bc1de7cf | p@chr2:187628574..187628585, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:132937900..132937907,-#_c8ca1afcf63df10d8f1313c9bc1de7cf | p@chr6:132937900..132937907, - |
| 4.22e-98 | FFCP PHASE2:Hg19::chr5:119669127..119669137,-#_30694b88c6d72431d586d3c2c915e5f8 | p4@ENST00000514240 |
| 4.22e-98 | FFCP PHASE1:Hg19::chr3:172166557..172166598,+#_30694b88c6d72431d586d3c2c915e5f8 | p@chr3:172166557..172166598, + |
| 4.22e-98 | FFCP PHASE2:Hg19::chr3:172166557..172166598,+#_30694b88c6d72431d586d3c2c915e5f8 | p@chr3:172166557..172166598, + |
| 4.22e-98 | FFCP PHASE1:Hg19::chr3:71777824..71777833,-#_30694b88c6d72431d586d3c2c915e5f8 | p28@EIF4E3 |
| 4.22e-98 | FFCP PHASE1:Hg19::chr11:79784329..79784335,-#_30694b88c6d72431d586d3c2c915e5f8 | p@chr11:79784329..79784335, - |
| 4.22e-98 | FFCP PHASE2:Hg19::chr3:71777824..71777833,-#_30694b88c6d72431d586d3c2c915e5f8 | p28@EIF4E3 |
| 4.22e-98 | FFCP PHASE2:Hg19::chr11:79784329..79784335,-#_30694b88c6d72431d586d3c2c915e5f8 | p@chr11:79784329..79784335, - |
| 4.22e-98 | FFCP PHASE1:Hg19::chr5:119669127..119669137,-#_30694b88c6d72431d586d3c2c915e5f8 | p4@ENST00000514240 |
| 7.79e-79 | FFCP PHASE2:Hg19::chr18:24435190..24435201,-#_546a1c8ed555479df28d677893658985 | p@chr18:24435190..24435201, - |
| 7.79e-79 | FFCP PHASE1:Hg19::chr18:24435190..24435201,-#_546a1c8ed555479df28d677893658985 | p@chr18:24435190..24435201, - |
| 7.41e-67 | FFCP PHASE1:Hg19::chr10:125454018..125454027,+#_552dce9d21c3f9cb06b4f1cd834c60c7 | p@chr10:125454018..125454027, + |
| 7.41e-67 | FFCP PHASE2:Hg19::chr10:125454018..125454027,+#_552dce9d21c3f9cb06b4f1cd834c60c7 | p@chr10:125454018..125454027, + |
| 1.04e-66 | FFCP PHASE1:Hg19::chr3:12225071..12225084,+#_1230a433d56cdc71f237b9b7c9fb115d | p15@SYN2 |
| 1.04e-66 | FFCP PHASE2:Hg19::chr3:12225071..12225084,+#_1230a433d56cdc71f237b9b7c9fb115d | p15@SYN2 |
| 7.73e-66 | FFCP PHASE2:Hg19::chrX:72432586..72432597,-#_92f3f7081d14a03df1bba8127f4931ed | p@chrX:72432586..72432597, - |
| 7.73e-66 | FFCP PHASE1:Hg19::chrX:72432586..72432597,-#_92f3f7081d14a03df1bba8127f4931ed | p@chrX:72432586..72432597, - |
| 2.02e-57 | FFCP PHASE1:Hg19::chr7:130745294..130745303,-#_83db8e147fae440b13cf77de82e38afc | p@chr7:130745294..130745303, - |
| 2.02e-57 | FFCP PHASE2:Hg19::chr7:130745294..130745303,-#_83db8e147fae440b13cf77de82e38afc | p@chr7:130745294..130745303, - |
| 2.02e-57 | FFCP PHASE2:Hg19::chrX:13789306..13789315,-#_83db8e147fae440b13cf77de82e38afc | p@chrX:13789306..13789315, - |
| 2.02e-57 | FFCP PHASE1:Hg19::chrX:13789306..13789315,-#_83db8e147fae440b13cf77de82e38afc | p@chrX:13789306..13789315, - |
| 2.69e-57 | FFCP PHASE2:Hg19::chr19:49932793..49932820,-#_951d68e2eaa9e6fc3dda91da630755a8 | p@chr19:49932793..49932820, - |
| 2.69e-57 | FFCP PHASE1:Hg19::chr19:49932793..49932820,-#_951d68e2eaa9e6fc3dda91da630755a8 | p@chr19:49932793..49932820, - |
| 3.58e-57 | FFCP PHASE2:Hg19::chr5:111964224..111964247,+#_98ea790a5e67effcc2bca4f39ab1b74c | p1@ENST00000507565 |
| 3.58e-57 | FFCP PHASE1:Hg19::chr2:79601075..79601083,+#_98ea790a5e67effcc2bca4f39ab1b74c | p@chr2:79601075..79601083, + |
| 3.58e-57 | FFCP PHASE2:Hg19::chr2:79601075..79601083,+#_98ea790a5e67effcc2bca4f39ab1b74c | p@chr2:79601075..79601083, + |
| 3.58e-57 | FFCP PHASE1:Hg19::chr5:111964224..111964247,+#_98ea790a5e67effcc2bca4f39ab1b74c | p1@ENST00000507565 |
| 4.77e-57 | FFCP PHASE1:Hg19::chr7:22158177..22158186,-#_1f88ab169ec549dbbb21633c1b978c31 | p@chr7:22158177..22158186, - |
| 4.77e-57 | FFCP PHASE2:Hg19::chr7:22158177..22158186,-#_1f88ab169ec549dbbb21633c1b978c31 | p@chr7:22158177..22158186, - |
| 6.36e-57 | FFCP PHASE2:Hg19::chr8:42981738..42981749,+#_a20bf908089fb61b486941f77c96bdf3 | p4@AK056481 |
| 6.36e-57 | FFCP PHASE1:Hg19::chr8:42981738..42981749,+#_a20bf908089fb61b486941f77c96bdf3 | p4@AK056481 |
| 8.82e-51 | FFCP PHASE2:Hg19::chr5:82155710..82155724,-#_c7f88457e707ab96a24bae0b057e9923 | p@chr5:82155710..82155724, - |
| 8.82e-51 | FFCP PHASE1:Hg19::chr5:82155710..82155724,-#_c7f88457e707ab96a24bae0b057e9923 | p@chr5:82155710..82155724, - |
| 1.14e-50 | FFCP PHASE1:Hg19::chr17:27901500..27901511,-#_23a2c7c173793310fb1b6a2dfa8d8108 | p25@GIT1 |
| 1.14e-50 | FFCP PHASE2:Hg19::chr17:27901500..27901511,-#_23a2c7c173793310fb1b6a2dfa8d8108 | p25@GIT1 |
| 1.14e-50 | FFCP PHASE1:Hg19::chr15:43814895..43814906,+#_23a2c7c173793310fb1b6a2dfa8d8108 | p35@MAP1A |
| 1.14e-50 | FFCP PHASE2:Hg19::chr15:43814895..43814906,+#_23a2c7c173793310fb1b6a2dfa8d8108 | p35@MAP1A |
| 2.42e-50 | FFCP PHASE1:Hg19::chr13:101712292..101712306,-#_2379b853c6db69e84caecea53241f7d4 | p@chr13:101712292..101712306, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr13:101712292..101712306,-#_2379b853c6db69e84caecea53241f7d4 | p@chr13:101712292..101712306, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr3:131756644..131756651,-#_121187e8ba74e263d90092c6272909c5 | p13@CPNE4 |
| 2.74e-50 | FFCP PHASE2:Hg19::chr3:131756644..131756651,-#_121187e8ba74e263d90092c6272909c5 | p13@CPNE4 |
| 2.74e-50 | FFCP PHASE1:Hg19::chr16:7240507..7240509,+#_121187e8ba74e263d90092c6272909c5 | p@chr16:7240507..7240509, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr19:49932741..49932746,-#_121187e8ba74e263d90092c6272909c5 | p@chr19:49932741..49932746, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr16:7240507..7240509,+#_121187e8ba74e263d90092c6272909c5 | p@chr16:7240507..7240509, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr19:49932741..49932746,-#_121187e8ba74e263d90092c6272909c5 | p@chr19:49932741..49932746, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr3:131756632..131756637,-#_121187e8ba74e263d90092c6272909c5 | p11@CPNE4 |
| 2.74e-50 | FFCP PHASE2:Hg19::chr3:131756632..131756637,-#_121187e8ba74e263d90092c6272909c5 | p11@CPNE4 |
| 3.11e-50 | FFCP PHASE2:Hg19::chr11:123502588..123502633,-#_4ffbdb78e14e2894505f5289149ee4de | p16@SCN3B |
| 3.11e-50 | FFCP PHASE1:Hg19::chr11:123502588..123502633,-#_4ffbdb78e14e2894505f5289149ee4de | p16@SCN3B |
| 4.0e-50 | FFCP PHASE1:Hg19::chr3:58552313..58552322,-#_d0b345baa3ac7ec89a0eaa3d95cf1620 | p@chr3:58552313..58552322, - |
| 4.0e-50 | FFCP PHASE2:Hg19::chr3:58552313..58552322,-#_d0b345baa3ac7ec89a0eaa3d95cf1620 | p@chr3:58552313..58552322, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr20:44330800..44330802,-#_fda7672f0d468f3ea8d4bfe59914c1a6 | p@chr20:44330800..44330802, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr21:27650939..27650945,-#_fda7672f0d468f3ea8d4bfe59914c1a6 | p@chr21:27650939..27650945, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr8:26365361..26365372,-#_fda7672f0d468f3ea8d4bfe59914c1a6 | p5@PNMA2 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr19:4772190..4772197,+#_fda7672f0d468f3ea8d4bfe59914c1a6 | p@chr19:4772190..4772197, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr1:99772065..99772074,+#_fda7672f0d468f3ea8d4bfe59914c1a6 | p13@LPPR4 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr8:26365361..26365372,-#_fda7672f0d468f3ea8d4bfe59914c1a6 | p5@PNMA2 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr18:24433388..24433397,-#_fda7672f0d468f3ea8d4bfe59914c1a6 | p20@AQP4 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr20:44330800..44330802,-#_fda7672f0d468f3ea8d4bfe59914c1a6 | p@chr20:44330800..44330802, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr19:4772190..4772197,+#_fda7672f0d468f3ea8d4bfe59914c1a6 | p@chr19:4772190..4772197, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr21:27651095..27651104,+#_fda7672f0d468f3ea8d4bfe59914c1a6 | p@chr21:27651095..27651104, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr21:27650939..27650945,-#_fda7672f0d468f3ea8d4bfe59914c1a6 | p@chr21:27650939..27650945, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr18:24433388..24433397,-#_fda7672f0d468f3ea8d4bfe59914c1a6 | p20@AQP4 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr8:81570615..81570619,-#_fda7672f0d468f3ea8d4bfe59914c1a6 | p@chr8:81570615..81570619, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr1:99772065..99772074,+#_fda7672f0d468f3ea8d4bfe59914c1a6 | p13@LPPR4 |
| 4.52e-50 | FFCP PHASE2:Hg19::chrX:152095682..152095708,-#_fda7672f0d468f3ea8d4bfe59914c1a6 | p@chrX:152095682..152095708, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr7:98460933..98460941,-#_fda7672f0d468f3ea8d4bfe59914c1a6 | p19@TMEM130 |
| 4.52e-50 | FFCP PHASE1:Hg19::chrX:152095682..152095708,-#_fda7672f0d468f3ea8d4bfe59914c1a6 | p@chrX:152095682..152095708, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr7:98460933..98460941,-#_fda7672f0d468f3ea8d4bfe59914c1a6 | p19@TMEM130 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr8:81570615..81570619,-#_fda7672f0d468f3ea8d4bfe59914c1a6 | p@chr8:81570615..81570619, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr21:27651095..27651104,+#_fda7672f0d468f3ea8d4bfe59914c1a6 | p@chr21:27651095..27651104, + |
| 5.15e-50 | FFCP PHASE2:Hg19::chr14:24037817..24037858,-#_9c9249f83e696a92dd28917bb72d6ad8 | p@chr14:24037817..24037858, - |
| 5.15e-50 | FFCP PHASE1:Hg19::chr14:24037817..24037858,-#_9c9249f83e696a92dd28917bb72d6ad8 | p@chr14:24037817..24037858, - |
| 6.61e-50 | FFCP PHASE1:Hg19::chr12:41234328..41234338,+#_a4d5d100f791dea20da41748bfc59b42 | p@chr12:41234328..41234338, + |
| 6.61e-50 | FFCP PHASE2:Hg19::chr12:41234328..41234338,+#_a4d5d100f791dea20da41748bfc59b42 | p@chr12:41234328..41234338, + |
| 3.19e-45 | FFCP PHASE1:Hg19::chr12:79843202..79843213,+#_62eba1cb83955d5f16c8572d5bd9f17e | p@chr12:79843202..79843213, + |
| 3.19e-45 | FFCP PHASE2:Hg19::chr12:79843202..79843213,+#_62eba1cb83955d5f16c8572d5bd9f17e | p@chr12:79843202..79843213, + |
| 3.19e-45 | FFCP PHASE2:Hg19::chr19:3294647..3294651,+#_62eba1cb83955d5f16c8572d5bd9f17e | p@chr19:3294647..3294651, + |
| 3.19e-45 | FFCP PHASE1:Hg19::chr19:3294647..3294651,+#_62eba1cb83955d5f16c8572d5bd9f17e | p@chr19:3294647..3294651, + |
| 6.26e-45 | FFCP PHASE1:Hg19::chr8:27316567..27316576,+#_fd0d405f367b9c1cc72453223687d885 | p@chr8:27316567..27316576, + |
| 6.26e-45 | FFCP PHASE2:Hg19::chr9:87426979..87426990,+#_fd0d405f367b9c1cc72453223687d885 | p54@NTRK2 |
| 6.26e-45 | FFCP PHASE1:Hg19::chr9:87426979..87426990,+#_fd0d405f367b9c1cc72453223687d885 | p54@NTRK2 |
| 6.26e-45 | FFCP PHASE1:Hg19::chr5:63258078..63258088,-#_fd0d405f367b9c1cc72453223687d885 | p6@HTR1A |
| 6.26e-45 | FFCP PHASE2:Hg19::chr8:27316567..27316576,+#_fd0d405f367b9c1cc72453223687d885 | p@chr8:27316567..27316576, + |
| 6.26e-45 | FFCP PHASE2:Hg19::chr5:63258078..63258088,-#_fd0d405f367b9c1cc72453223687d885 | p6@HTR1A |
| 7.83e-45 | FFCP PHASE2:Hg19::chr5:63258105..63258124,-#_192db69e201db54ab0a08983aa7ee748 | p2@HTR1A |
| 7.83e-45 | FFCP PHASE1:Hg19::chr2:101965038..101965076,-#_192db69e201db54ab0a08983aa7ee748 | p@chr2:101965038..101965076, - |
| 7.83e-45 | FFCP PHASE1:Hg19::chr1:160112787..160112798,+#_192db69e201db54ab0a08983aa7ee748 | p12@ATP1A2 |
| 7.83e-45 | FFCP PHASE2:Hg19::chr2:101965038..101965076,-#_192db69e201db54ab0a08983aa7ee748 | p@chr2:101965038..101965076, - |
| 7.83e-45 | FFCP PHASE1:Hg19::chr5:63258105..63258124,-#_192db69e201db54ab0a08983aa7ee748 | p2@HTR1A |
| 7.83e-45 | FFCP PHASE2:Hg19::chr1:160112787..160112798,+#_192db69e201db54ab0a08983aa7ee748 | p12@ATP1A2 |
