UBERON:0002470: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=autopod region | |name=autopod region | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 17:32, 12 September 2014
| Name: | autopod region | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Terminal segment of free upper limb, immediately distal to the zeugopod region. The fully developed autopod consists of the autopod skeleton plus associated structures such as integument, muscle tissue, vasculature etc. The autopod is divided into mesopodial, metapodiual, and acropodial segments. Examples: human hand, mouse paw, human foot" [UBERON:cjm] | ||
| Xrefs: |
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| Synonyms: |
"autopod" BROAD [MA:0002714] "autopodial limb segment" EXACT [MA:th] "autopodial segment" EXACT [] "autopodium" EXACT [] "autopodium region" EXACT [] "distal free limb segment" EXACT [FMA:83015] "distal segment of free limb" EXACT [FMA:83015] "paw" RELATED [] "pod" RELATED [] | ||
| Comments: | Naming conventions for pod terms under discussion within phenoscape group; note that this refers to the limb segment, not just the skeleton. | ||
| Alt_id: | UBERON:MA_0002714-MIAA_0000091 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002529(limb segment) |
|---|---|
| develops_from: | UBERON:0010130(autopod plate) |
Children
| is a: | UBERON:0002387 (foot),UBERON:0002398 (manus) |
|---|---|
| part of: | UBERON:0008837 (palmar/plantar part of autopod),UBERON:0012139 (segment of autopod),UBERON:0015790 (autopod skin) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10273-104E3
- 10285-104F6
- 10286-104F7 (Skin - palm, donor1)
- 10301-104H4 (Fingernail (including nail plate, eponychium and hyponychium), donor2)
- 10313-104I7
- 10314-104I8
- 10329-105B5
- 10341-105C8
- 10342-105C9
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002470 (autopod region), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results
