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|located_in=
|located_in=
|name=medulla oblongata
|name=medulla oblongata
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0002028;;UBERON:0002298;;UBERON:0005290
|part_of=UBERON:0002028;;UBERON:0002298;;UBERON:0005290

Latest revision as of 17:22, 12 September 2014

Name:medulla oblongata
Namespace:FANTOM
Definition:"Organ component of neuraxis that has as its parts the medullary reticular formation, inferior olivary complex and cochlear nuclear complex, among other structures[FMA]. The medulla oblongata lies directly above the spinal cord and controls vital autonomic functions such as digestion, breathing and the control of heart rate[GO]." [FMA:62004, GO:0021550, Wikipedia:Bone_marrow_of_ovary_oblongata]
Xrefs:
links:

AAO:0010486
ABA:MY
BTO:0000041
EFO:0000924
EHDAA2:0001088
EHDAA:7588
EMAPA:17550
EV:0100275
FMA:62004
GAID:590
[1]
MA:0000206
MAT:0000111
MAT:0000367
MESH:A.08.186.211.132.810.406
MIAA:0000111
ncithesaurus:Medulla_Oblongata
NIF_GrossAnatomy:birnlex_957
OpenCyc:Mx4rvVjxSJwpEbGdrcN5Y29ycA
OpenCyc:Mx4rwCqnXJwpEbGdrcN5Y29ycA
SCTID:279104005
TAO:0000545
VHOG:0000181
XAO:0003100

ZFA:0000545
Synonyms: "bulb" BROAD []
"bulbus" EXACT [FMA:62004, FMA:TA]
"medulla" BROAD [ABA:MY]
"medulla oblonzata" RELATED LATIN [Wikipedia:Medulla_oblongata]
"metepencephalon" RELATED [FMA:62004]
Alt_id: UBERON:FMA_62004-MA_0000206-MIAA_0000111-XAO_0003100-ZFA_0000545
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000064(organ part),UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0002028(hindbrain),UBERON:0002298(brainstem),UBERON:0005290(myelencephalon)



Children

is a:FF:10361-105F1 (medulla oblongata, newborn, donor10223)
derives from:FF:0010038 (human medulla oblongata - adult sample),FF:0011284 (mouse medulla oblongata- adult sample),FF:0011465 (mouse medulla oblongata- neonate N30 sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001896 (medulla oblongata), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.98e-131FFCP PHASE1:Hg19::chr12:44467410..44467418,+#_68c3e983765014266873215ef9f2974ap13@TMEM117
8.98e-131FFCP PHASE1:Hg19::chr5:35090318..35090324,-#_68c3e983765014266873215ef9f2974ap@chr5:35090318..35090324, -
8.98e-131FFCP PHASE2:Hg19::chr2:8851401..8851408,+#_68c3e983765014266873215ef9f2974ap@chr2:8851401..8851408, +
8.98e-131FFCP PHASE2:Hg19::chr5:35090318..35090324,-#_68c3e983765014266873215ef9f2974ap@chr5:35090318..35090324, -
8.98e-131FFCP PHASE1:Hg19::chr5:35090057..35090065,-#_68c3e983765014266873215ef9f2974ap27@PRLR
8.98e-131FFCP PHASE1:Hg19::chr6:132580699..132580702,+#_68c3e983765014266873215ef9f2974ap@chr6:132580699..132580702, +
8.98e-131FFCP PHASE2:Hg19::chr5:35090057..35090065,-#_68c3e983765014266873215ef9f2974ap27@PRLR
8.98e-131FFCP PHASE2:Hg19::chr6:132580699..132580702,+#_68c3e983765014266873215ef9f2974ap@chr6:132580699..132580702, +
8.98e-131FFCP PHASE2:Hg19::chr12:44467410..44467418,+#_68c3e983765014266873215ef9f2974ap13@TMEM117
8.98e-131FFCP PHASE1:Hg19::chr2:8851401..8851408,+#_68c3e983765014266873215ef9f2974ap@chr2:8851401..8851408, +
5.2e-118FFCP PHASE1:Hg19::chr11:114146042..114146050,-#_186f65f65aa00cbd80c7e67372831ac6p@chr11:114146042..114146050, -
5.2e-118FFCP PHASE2:Hg19::chr11:114146042..114146050,-#_186f65f65aa00cbd80c7e67372831ac6p@chr11:114146042..114146050, -
5.2e-118FFCP PHASE1:Hg19::chr8:12803146..12803155,+#_186f65f65aa00cbd80c7e67372831ac6p17@KIAA1456
5.2e-118FFCP PHASE2:Hg19::chr8:12803146..12803155,+#_186f65f65aa00cbd80c7e67372831ac6p17@KIAA1456
5.69e-99FFCP PHASE1:Hg19::chr7:129015906..129015915,+#_a7ed9df5bdde6b712291defad845530dp@chr7:129015906..129015915, +
5.69e-99FFCP PHASE2:Hg19::chr7:129015906..129015915,+#_a7ed9df5bdde6b712291defad845530dp@chr7:129015906..129015915, +
5.69e-99FFCP PHASE1:Hg19::chr5:35090259..35090267,-#_a7ed9df5bdde6b712291defad845530dp12@PRLR
5.69e-99FFCP PHASE2:Hg19::chr5:35090259..35090267,-#_a7ed9df5bdde6b712291defad845530dp12@PRLR
7.95e-99FFCP PHASE1:Hg19::chr7:129027894..129027906,+#_c9053c77dbf3bb4c2497ee775605383ap16@AHCYL2
7.95e-99FFCP PHASE2:Hg19::chr7:129027894..129027906,+#_c9053c77dbf3bb4c2497ee775605383ap16@AHCYL2
1.55e-98FFCP PHASE1:Hg19::chr8:37561236..37561245,+#_c4bfa268b9ff0ac0b1618f9f176c0316p@chr8:37561236..37561245, +
1.55e-98FFCP PHASE2:Hg19::chr8:37561236..37561245,+#_c4bfa268b9ff0ac0b1618f9f176c0316p@chr8:37561236..37561245, +
6.24e-88FFCP PHASE1:Hg19::chr7:129012882..129012891,-#_5a5321b3923df58e622e2ffe862f37a8p@chr7:129012882..129012891, -
6.24e-88FFCP PHASE2:Hg19::chr11:119216846..119216857,-#_5a5321b3923df58e622e2ffe862f37a8p@chr11:119216846..119216857, -
6.24e-88FFCP PHASE2:Hg19::chr5:35089832..35089839,-#_5a5321b3923df58e622e2ffe862f37a8p26@PRLR
6.24e-88FFCP PHASE1:Hg19::chr15:40492238..40492270,+#_5a5321b3923df58e622e2ffe862f37a8p8@BUB1B
6.24e-88FFCP PHASE2:Hg19::chr7:129012882..129012891,-#_5a5321b3923df58e622e2ffe862f37a8p@chr7:129012882..129012891, -
6.24e-88FFCP PHASE1:Hg19::chr7:129015806..129015815,+#_5a5321b3923df58e622e2ffe862f37a8p@chr7:129015806..129015815, +
6.24e-88FFCP PHASE2:Hg19::chr12:20951599..20951604,+#_5a5321b3923df58e622e2ffe862f37a8p@chr12:20951599..20951604, +
6.24e-88FFCP PHASE2:Hg19::chr7:129015806..129015815,+#_5a5321b3923df58e622e2ffe862f37a8p@chr7:129015806..129015815, +
6.24e-88FFCP PHASE1:Hg19::chr12:20951599..20951604,+#_5a5321b3923df58e622e2ffe862f37a8p@chr12:20951599..20951604, +
6.24e-88FFCP PHASE2:Hg19::chr12:44467399..44467407,+#_5a5321b3923df58e622e2ffe862f37a8p12@TMEM117
6.24e-88FFCP PHASE2:Hg19::chr15:40492238..40492270,+#_5a5321b3923df58e622e2ffe862f37a8p8@BUB1B
6.24e-88FFCP PHASE1:Hg19::chr5:35089799..35089804,-#_5a5321b3923df58e622e2ffe862f37a8p20@PRLR
6.24e-88FFCP PHASE2:Hg19::chr12:129304411..129304414,-#_5a5321b3923df58e622e2ffe862f37a8p11@SLC15A4
6.24e-88FFCP PHASE1:Hg19::chr12:44467399..44467407,+#_5a5321b3923df58e622e2ffe862f37a8p12@TMEM117
6.24e-88FFCP PHASE2:Hg19::chr5:35089799..35089804,-#_5a5321b3923df58e622e2ffe862f37a8p20@PRLR
6.24e-88FFCP PHASE1:Hg19::chr11:119216846..119216857,-#_5a5321b3923df58e622e2ffe862f37a8p@chr11:119216846..119216857, -
6.24e-88FFCP PHASE1:Hg19::chr12:129304411..129304414,-#_5a5321b3923df58e622e2ffe862f37a8p11@SLC15A4
6.24e-88FFCP PHASE1:Hg19::chr5:35089832..35089839,-#_5a5321b3923df58e622e2ffe862f37a8p26@PRLR
9.74e-88FFCP PHASE2:Hg19::chr18:29172879..29172882,+#_958def1af071bf3d3cb57b3e0c098bc7p5@TTR
9.74e-88FFCP PHASE1:Hg19::chr8:12803139..12803144,+#_958def1af071bf3d3cb57b3e0c098bc7p23@KIAA1456
9.74e-88FFCP PHASE1:Hg19::chr5:33514132..33514156,+#_958def1af071bf3d3cb57b3e0c098bc7p@chr5:33514132..33514156, +
9.74e-88FFCP PHASE1:Hg19::chr18:29172879..29172882,+#_958def1af071bf3d3cb57b3e0c098bc7p5@TTR
9.74e-88FFCP PHASE2:Hg19::chr5:33514132..33514156,+#_958def1af071bf3d3cb57b3e0c098bc7p@chr5:33514132..33514156, +
9.74e-88FFCP PHASE2:Hg19::chr11:71869850..71869861,+#_958def1af071bf3d3cb57b3e0c098bc7p1@ENST00000544535
9.74e-88FFCP PHASE2:Hg19::chr8:12803139..12803144,+#_958def1af071bf3d3cb57b3e0c098bc7p23@KIAA1456
9.74e-88FFCP PHASE1:Hg19::chr11:71869850..71869861,+#_958def1af071bf3d3cb57b3e0c098bc7p1@ENST00000544535
1.52e-87FFCP PHASE1:Hg19::chr10:73479518..73479527,-#_0c9924a32c250f1849968fe3aa9eb1f3p5@C10orf105
1.52e-87FFCP PHASE1:Hg19::chr5:126959224..126959239,+#_0c9924a32c250f1849968fe3aa9eb1f3p@chr5:126959224..126959239, +
1.52e-87FFCP PHASE2:Hg19::chr16:49670005..49670020,-#_0c9924a32c250f1849968fe3aa9eb1f3p@chr16:49670005..49670020, -
1.52e-87FFCP PHASE2:Hg19::chr10:73479518..73479527,-#_0c9924a32c250f1849968fe3aa9eb1f3p5@C10orf105
1.52e-87FFCP PHASE2:Hg19::chr5:126959224..126959239,+#_0c9924a32c250f1849968fe3aa9eb1f3p@chr5:126959224..126959239, +
1.52e-87FFCP PHASE1:Hg19::chr11:111191106..111191110,+#_0c9924a32c250f1849968fe3aa9eb1f3p@chr11:111191106..111191110, +
1.52e-87FFCP PHASE1:Hg19::chr16:49670005..49670020,-#_0c9924a32c250f1849968fe3aa9eb1f3p@chr16:49670005..49670020, -
1.52e-87FFCP PHASE2:Hg19::chr11:111191106..111191110,+#_0c9924a32c250f1849968fe3aa9eb1f3p@chr11:111191106..111191110, +
5.41e-85FFCP PHASE1:Hg19::chr2:69741832..69741847,-#_bf4f8ad227fc47dc5891f8ad275fe075p@chr2:69741832..69741847, -
5.41e-85FFCP PHASE2:Hg19::chr2:69741832..69741847,-#_bf4f8ad227fc47dc5891f8ad275fe075p@chr2:69741832..69741847, -
5.41e-85FFCP PHASE1:Hg19::chr10:73479546..73479553,-#_bf4f8ad227fc47dc5891f8ad275fe075p4@C10orf105
5.41e-85FFCP PHASE2:Hg19::chr10:73479546..73479553,-#_bf4f8ad227fc47dc5891f8ad275fe075p4@C10orf105
7.21e-85FFCP PHASE1:Hg19::chr5:150050170..150050182,+#_b4bdbe9d367fa2817a88b2a552ab8de2p@chr5:150050170..150050182, +
7.21e-85FFCP PHASE2:Hg19::chr5:150050170..150050182,+#_b4bdbe9d367fa2817a88b2a552ab8de2p@chr5:150050170..150050182, +
2.27e-84FFCP PHASE2:Hg19::chr15:99666457..99666462,+#_ce0e50efc20a92076a03ef5db91bf5f6p@chr15:99666457..99666462, +
2.27e-84FFCP PHASE1:Hg19::chr15:99666457..99666462,+#_ce0e50efc20a92076a03ef5db91bf5f6p@chr15:99666457..99666462, +
3.03e-84FFCP PHASE2:Hg19::chr17:42993851..42993858,-#_962b3ca5ef8f94e59527ef74eb8c1bc3p@chr17:42993851..42993858, -
3.03e-84FFCP PHASE1:Hg19::chr17:42993851..42993858,-#_962b3ca5ef8f94e59527ef74eb8c1bc3p@chr17:42993851..42993858, -
4.03e-84FFCP PHASE2:Hg19::chr17:65489258..65489261,-#_a6f292714c3230ce3a101e7f6dbca2a5p@chr17:65489258..65489261, -
4.03e-84FFCP PHASE1:Hg19::chr17:65489258..65489261,-#_a6f292714c3230ce3a101e7f6dbca2a5p@chr17:65489258..65489261, -
1.66e-74FFCP PHASE2:Hg19::chr10:18242120..18242136,+#_f32788d11c38c40374df11a7780271d8p4@SLC39A12
1.66e-74FFCP PHASE1:Hg19::chr10:18242120..18242136,+#_f32788d11c38c40374df11a7780271d8p4@SLC39A12
2.14e-74FFCP PHASE2:Hg19::chr12:47779637..47779662,-#_fb5896f223aa0da30588ae0503617cb8p@chr12:47779637..47779662, -
2.14e-74FFCP PHASE1:Hg19::chr12:47779637..47779662,-#_fb5896f223aa0da30588ae0503617cb8p@chr12:47779637..47779662, -
2.14e-74FFCP PHASE1:Hg19::chr9:128998376..128998387,-#_fb5896f223aa0da30588ae0503617cb8p@chr9:128998376..128998387, -
2.14e-74FFCP PHASE2:Hg19::chr9:128998376..128998387,-#_fb5896f223aa0da30588ae0503617cb8p@chr9:128998376..128998387, -
7.51e-74FFCP PHASE2:Hg19::chr6:151054854..151054865,+#_cde45bdffcc7ce78156f750348a5756bp17@PLEKHG1
7.51e-74FFCP PHASE1:Hg19::chr6:151054854..151054865,+#_cde45bdffcc7ce78156f750348a5756bp17@PLEKHG1
9.82e-67FFCP PHASE1:Hg19::chr7:129015671..129015685,+#_c5c9df535b4211af1045612322857c79p11@AHCYL2
9.82e-67FFCP PHASE1:Hg19::chr5:35089843..35089860,-#_c5c9df535b4211af1045612322857c79p7@PRLR
9.82e-67FFCP PHASE2:Hg19::chr7:129015671..129015685,+#_c5c9df535b4211af1045612322857c79p11@AHCYL2
9.82e-67FFCP PHASE2:Hg19::chr5:35089843..35089860,-#_c5c9df535b4211af1045612322857c79p7@PRLR
1.71e-66FFCP PHASE1:Hg19::chr9:20927844..20927855,+#_f718344480f949c7f9a2b96000f62ea9p@chr9:20927844..20927855, +
1.71e-66FFCP PHASE2:Hg19::chr9:20927844..20927855,+#_f718344480f949c7f9a2b96000f62ea9p@chr9:20927844..20927855, +
1.92e-66FFCP PHASE1:Hg19::chr11:20621148..20621166,+#_7a267860ed1e359307780d303a636cccp1@SLC6A5
1.92e-66FFCP PHASE2:Hg19::chr11:20621148..20621166,+#_7a267860ed1e359307780d303a636cccp1@SLC6A5
2.39e-66FFCP PHASE2:Hg19::chr7:129015616..129015619,+#_71ca6147e3aa3c37cbce10ec96d64b62p38@AHCYL2
2.39e-66FFCP PHASE1:Hg19::chr9:5954514..5954521,-#_71ca6147e3aa3c37cbce10ec96d64b62p18@KIAA2026
2.39e-66FFCP PHASE1:Hg19::chr7:129015511..129015519,+#_71ca6147e3aa3c37cbce10ec96d64b62p30@AHCYL2
2.39e-66FFCP PHASE2:Hg19::chr9:5954514..5954521,-#_71ca6147e3aa3c37cbce10ec96d64b62p18@KIAA2026
2.39e-66FFCP PHASE2:Hg19::chr7:129015511..129015519,+#_71ca6147e3aa3c37cbce10ec96d64b62p30@AHCYL2
2.39e-66FFCP PHASE1:Hg19::chr7:129015616..129015619,+#_71ca6147e3aa3c37cbce10ec96d64b62p38@AHCYL2
2.4e-66FFCP PHASE1:Hg19::chr3:59750150..59750155,-#_a4efbe9c9ddc1edcae172f5a662b834bp@chr3:59750150..59750155, -
2.4e-66FFCP PHASE2:Hg19::chr3:59750150..59750155,-#_a4efbe9c9ddc1edcae172f5a662b834bp@chr3:59750150..59750155, -
2.4e-66FFCP PHASE1:Hg19::chr7:150529074..150529076,+#_a4efbe9c9ddc1edcae172f5a662b834bp@chr7:150529074..150529076, +
2.4e-66FFCP PHASE2:Hg19::chr7:150529074..150529076,+#_a4efbe9c9ddc1edcae172f5a662b834bp@chr7:150529074..150529076, +
2.4e-66FFCP PHASE2:Hg19::chr17:48913152..48913158,+#_a4efbe9c9ddc1edcae172f5a662b834bp9@WFIKKN2
2.4e-66FFCP PHASE1:Hg19::chr17:48913152..48913158,+#_a4efbe9c9ddc1edcae172f5a662b834bp9@WFIKKN2
2.41e-66FFCP PHASE1:Hg19::chr10:97236225..97236232,-#_26053e81ab19c076fd1dcedc84dc55e2p@chr10:97236225..97236232, -
2.41e-66FFCP PHASE2:Hg19::chr10:97236225..97236232,-#_26053e81ab19c076fd1dcedc84dc55e2p@chr10:97236225..97236232, -
3.35e-66FFCP PHASE1:Hg19::chr3:125997081..125997085,+#_9c5274f834121ed99dd3af50dbeba805p@chr3:125997081..125997085, +
3.35e-66FFCP PHASE2:Hg19::chr3:125997081..125997085,+#_9c5274f834121ed99dd3af50dbeba805p@chr3:125997081..125997085, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "Posterior portion of the hindbrain which controls respiration, heartbeat, digestion, and swallowing as well as some locomotor responses.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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