UBERON:0001630: Difference between revisions
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|located_in= | |located_in= | ||
|name=muscle organ | |name=muscle organ | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001015 | |part_of=UBERON:0001015 | ||
Latest revision as of 17:19, 12 September 2014
| Name: | muscle organ | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work[GO]. Nonparenchymatous organ that primarily consists of skeletal muscle tissue aggregated into macroscopic fasciculi by connective tissue; together with other muscles, it constitutes the muscular system. Examples: biceps, diaphragm, masseter, right third external intercostal muscle, external oblique, levator ani, serratus anterior[FMA]." [GO:0007517] | ||
| Xrefs: |
| ||
| Synonyms: |
"muscle" EXACT [ZFA:0005145] "skeletal muscle system" RELATED [BTO:0001103] "somatic muscle" RELATED [BTO:0001103] | ||
| Alt_id: | UBERON:FMA_5022-MIAA_0000302-XAO_0000174 | ||
| Subset: |
organ_slim uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000062(organ),UBERON:0005090(muscle structure) |
|---|---|
| part_of: | UBERON:0001015(musculature) |
Children
| is a: | UBERON:0001665 (triceps surae),UBERON:0001774 (muscle of trunk),UBERON:0002463 (hamstring muscle),UBERON:0003831 (respiratory system muscle),UBERON:0004277 (eye muscle),UBERON:0014892 (skeletal muscle organ) |
|---|---|
| disjoint from: | UBERON:0001474 (bone element) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10069-101I6 (diaphragm, fetal, donor1)
- 10264-104D3
- 10269-104D8
- 10270-104D9
- 10271-104E1
- 10272-104E2 (eye - muscle inferior rectus, donor1)
- 10281-104F2
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10292-104G4 (achilles tendon, donor2)
- 10297-104G9 (eye - muscle superior, donor2)
... further results Mouse (Mus musculus)
- 10069-101I6 (diaphragm, fetal, donor1)
- 10264-104D3
- 10269-104D8
- 10270-104D9
- 10271-104E1
- 10272-104E2 (eye - muscle inferior rectus, donor1)
- 10281-104F2
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10292-104G4 (achilles tendon, donor2)
- 10297-104G9 (eye - muscle superior, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001630 (muscle organ), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.61e-131 | FFCP PHASE1:Hg19::chr2:179542420..179542428,-#_6114feeb7c13a75d03119886aa9e2577 | p@chr2:179542420..179542428, - |
| 4.61e-131 | FFCP PHASE1:Hg19::chr19:50997736..50997745,-#_6114feeb7c13a75d03119886aa9e2577 | p@chr19:50997736..50997745, - |
| 4.61e-131 | FFCP PHASE2:Hg19::chr2:179542420..179542428,-#_6114feeb7c13a75d03119886aa9e2577 | p@chr2:179542420..179542428, - |
| 4.61e-131 | FFCP PHASE2:Hg19::chr19:50994855..50994864,-#_6114feeb7c13a75d03119886aa9e2577 | p@chr19:50994855..50994864, - |
| 4.61e-131 | FFCP PHASE1:Hg19::chr15:99548796..99548805,-#_6114feeb7c13a75d03119886aa9e2577 | p3@PGPEP1L |
| 4.61e-131 | FFCP PHASE1:Hg19::chr19:50994855..50994864,-#_6114feeb7c13a75d03119886aa9e2577 | p@chr19:50994855..50994864, - |
| 4.61e-131 | FFCP PHASE2:Hg19::chr10:99343436..99343448,+#_6114feeb7c13a75d03119886aa9e2577 | p@chr10:99343436..99343448, + |
| 4.61e-131 | FFCP PHASE2:Hg19::chr2:179588230..179588237,-#_6114feeb7c13a75d03119886aa9e2577 | p@chr2:179588230..179588237, - |
| 4.61e-131 | FFCP PHASE2:Hg19::chr2:179548750..179548755,-#_6114feeb7c13a75d03119886aa9e2577 | p@chr2:179548750..179548755, - |
| 4.61e-131 | FFCP PHASE1:Hg19::chr2:179588230..179588237,-#_6114feeb7c13a75d03119886aa9e2577 | p@chr2:179588230..179588237, - |
| 4.61e-131 | FFCP PHASE1:Hg19::chr2:179548750..179548755,-#_6114feeb7c13a75d03119886aa9e2577 | p@chr2:179548750..179548755, - |
| 4.61e-131 | FFCP PHASE1:Hg19::chr10:99343436..99343448,+#_6114feeb7c13a75d03119886aa9e2577 | p@chr10:99343436..99343448, + |
| 4.61e-131 | FFCP PHASE2:Hg19::chr15:99548796..99548805,-#_6114feeb7c13a75d03119886aa9e2577 | p3@PGPEP1L |
| 4.61e-131 | FFCP PHASE2:Hg19::chr19:50997736..50997745,-#_6114feeb7c13a75d03119886aa9e2577 | p@chr19:50997736..50997745, - |
| 8.99e-131 | FFCP PHASE2:Hg19::chr2:152419209..152419216,-#_da129e98a6cc20dc40dd5ccf779126d6 | p@chr2:152419209..152419216, - |
| 8.99e-131 | FFCP PHASE1:Hg19::chr2:168105377..168105386,+#_da129e98a6cc20dc40dd5ccf779126d6 | p28@XIRP2 |
| 8.99e-131 | FFCP PHASE1:Hg19::chr2:152419209..152419216,-#_da129e98a6cc20dc40dd5ccf779126d6 | p@chr2:152419209..152419216, - |
| 8.99e-131 | FFCP PHASE1:Hg19::chr2:152342364..152342373,-#_da129e98a6cc20dc40dd5ccf779126d6 | p@chr2:152342364..152342373, - |
| 8.99e-131 | FFCP PHASE2:Hg19::chr2:152342364..152342373,-#_da129e98a6cc20dc40dd5ccf779126d6 | p@chr2:152342364..152342373, - |
| 8.99e-131 | FFCP PHASE1:Hg19::chr12:102075405..102075407,+#_da129e98a6cc20dc40dd5ccf779126d6 | p@chr12:102075405..102075407, + |
| 8.99e-131 | FFCP PHASE2:Hg19::chr2:152514527..152514536,-#_da129e98a6cc20dc40dd5ccf779126d6 | p@chr2:152514527..152514536, - |
| 8.99e-131 | FFCP PHASE2:Hg19::chr2:152476098..152476105,-#_da129e98a6cc20dc40dd5ccf779126d6 | p@chr2:152476098..152476105, - |
| 8.99e-131 | FFCP PHASE2:Hg19::chr12:102075405..102075407,+#_da129e98a6cc20dc40dd5ccf779126d6 | p@chr12:102075405..102075407, + |
| 8.99e-131 | FFCP PHASE1:Hg19::chr2:152514527..152514536,-#_da129e98a6cc20dc40dd5ccf779126d6 | p@chr2:152514527..152514536, - |
| 8.99e-131 | FFCP PHASE1:Hg19::chr2:152476098..152476105,-#_da129e98a6cc20dc40dd5ccf779126d6 | p@chr2:152476098..152476105, - |
| 8.99e-131 | FFCP PHASE2:Hg19::chr2:168106984..168106993,+#_da129e98a6cc20dc40dd5ccf779126d6 | p34@XIRP2 |
| 8.99e-131 | FFCP PHASE1:Hg19::chr2:168106984..168106993,+#_da129e98a6cc20dc40dd5ccf779126d6 | p34@XIRP2 |
| 8.99e-131 | FFCP PHASE2:Hg19::chr2:168105377..168105386,+#_da129e98a6cc20dc40dd5ccf779126d6 | p28@XIRP2 |
| 1.75e-130 | FFCP PHASE2:Hg19::chr2:152393686..152393693,-#_e4a023fed3fd1ad730cf868aa6984f05 | p@chr2:152393686..152393693, - |
| 1.75e-130 | FFCP PHASE1:Hg19::chr2:152393686..152393693,-#_e4a023fed3fd1ad730cf868aa6984f05 | p@chr2:152393686..152393693, - |
| 5.68e-99 | FFCP PHASE2:Hg19::chr10:99342361..99342373,+#_52947e80235d549da546bbac6182c140 | p@chr10:99342361..99342373, + |
| 5.68e-99 | FFCP PHASE1:Hg19::chr2:179399744..179399749,-#_52947e80235d549da546bbac6182c140 | p@chr2:179399744..179399749, - |
| 5.68e-99 | FFCP PHASE2:Hg19::chr2:179399744..179399749,-#_52947e80235d549da546bbac6182c140 | p@chr2:179399744..179399749, - |
| 5.68e-99 | FFCP PHASE2:Hg19::chr15:99548808..99548813,-#_52947e80235d549da546bbac6182c140 | p6@PGPEP1L |
| 5.68e-99 | FFCP PHASE2:Hg19::chr19:45818804..45818807,-#_52947e80235d549da546bbac6182c140 | p@chr19:45818804..45818807, - |
| 5.68e-99 | FFCP PHASE1:Hg19::chr19:45818804..45818807,-#_52947e80235d549da546bbac6182c140 | p@chr19:45818804..45818807, - |
| 5.68e-99 | FFCP PHASE2:Hg19::chr2:179517267..179517276,-#_52947e80235d549da546bbac6182c140 | p@chr2:179517267..179517276, - |
| 5.68e-99 | FFCP PHASE1:Hg19::chr15:99548808..99548813,-#_52947e80235d549da546bbac6182c140 | p6@PGPEP1L |
| 5.68e-99 | FFCP PHASE1:Hg19::chr2:179517267..179517276,-#_52947e80235d549da546bbac6182c140 | p@chr2:179517267..179517276, - |
| 5.68e-99 | FFCP PHASE2:Hg19::chr2:179509343..179509355,-#_52947e80235d549da546bbac6182c140 | p@chr2:179509343..179509355, - |
| 5.68e-99 | FFCP PHASE2:Hg19::chr2:152522901..152522910,-#_52947e80235d549da546bbac6182c140 | p@chr2:152522901..152522910, - |
| 5.68e-99 | FFCP PHASE1:Hg19::chr2:179509343..179509355,-#_52947e80235d549da546bbac6182c140 | p@chr2:179509343..179509355, - |
| 5.68e-99 | FFCP PHASE1:Hg19::chr10:99342361..99342373,+#_52947e80235d549da546bbac6182c140 | p@chr10:99342361..99342373, + |
| 5.68e-99 | FFCP PHASE2:Hg19::chr19:50995069..50995079,-#_52947e80235d549da546bbac6182c140 | p@chr19:50995069..50995079, - |
| 5.68e-99 | FFCP PHASE1:Hg19::chr2:179399074..179399079,-#_52947e80235d549da546bbac6182c140 | p@chr2:179399074..179399079, - |
| 5.68e-99 | FFCP PHASE1:Hg19::chr2:152522901..152522910,-#_52947e80235d549da546bbac6182c140 | p@chr2:152522901..152522910, - |
| 5.68e-99 | FFCP PHASE2:Hg19::chr2:179397272..179397275,-#_52947e80235d549da546bbac6182c140 | p143@TTN |
| 5.68e-99 | FFCP PHASE1:Hg19::chr19:50995069..50995079,-#_52947e80235d549da546bbac6182c140 | p@chr19:50995069..50995079, - |
| 5.68e-99 | FFCP PHASE1:Hg19::chr2:179397272..179397275,-#_52947e80235d549da546bbac6182c140 | p143@TTN |
| 5.68e-99 | FFCP PHASE2:Hg19::chr2:179399074..179399079,-#_52947e80235d549da546bbac6182c140 | p@chr2:179399074..179399079, - |
| 5.68e-99 | FFCP PHASE2:Hg19::chr2:168114748..168114758,+#_52947e80235d549da546bbac6182c140 | p32@XIRP2 |
| 5.68e-99 | FFCP PHASE1:Hg19::chr2:168114748..168114758,+#_52947e80235d549da546bbac6182c140 | p32@XIRP2 |
| 9.38e-99 | FFCP PHASE2:Hg19::chr19:55644220..55644230,-#_ba192c92360fb4144227915c6ad7bc5d | p@chr19:55644220..55644230, - |
| 9.38e-99 | FFCP PHASE2:Hg19::chr2:152544188..152544205,-#_ba192c92360fb4144227915c6ad7bc5d | p@chr2:152544188..152544205, - |
| 9.38e-99 | FFCP PHASE1:Hg19::chr2:152581419..152581429,+#_ba192c92360fb4144227915c6ad7bc5d | p@chr2:152581419..152581429, + |
| 9.38e-99 | FFCP PHASE1:Hg19::chr19:55644220..55644230,-#_ba192c92360fb4144227915c6ad7bc5d | p@chr19:55644220..55644230, - |
| 9.38e-99 | FFCP PHASE2:Hg19::chr2:152426665..152426675,-#_ba192c92360fb4144227915c6ad7bc5d | p@chr2:152426665..152426675, - |
| 9.38e-99 | FFCP PHASE1:Hg19::chr2:152544188..152544205,-#_ba192c92360fb4144227915c6ad7bc5d | p@chr2:152544188..152544205, - |
| 9.38e-99 | FFCP PHASE1:Hg19::chr2:152426665..152426675,-#_ba192c92360fb4144227915c6ad7bc5d | p@chr2:152426665..152426675, - |
| 9.38e-99 | FFCP PHASE2:Hg19::chr2:152581419..152581429,+#_ba192c92360fb4144227915c6ad7bc5d | p@chr2:152581419..152581429, + |
| 9.38e-99 | FFCP PHASE2:Hg19::chrX:21676413..21676421,-#_ba192c92360fb4144227915c6ad7bc5d | p4@KLHL34 |
| 9.38e-99 | FFCP PHASE1:Hg19::chrX:21676413..21676421,-#_ba192c92360fb4144227915c6ad7bc5d | p4@KLHL34 |
| 9.38e-99 | FFCP PHASE1:Hg19::chr12:111351081..111351086,-#_ba192c92360fb4144227915c6ad7bc5d | p@chr12:111351081..111351086, - |
| 9.38e-99 | FFCP PHASE2:Hg19::chr2:179569985..179569993,-#_ba192c92360fb4144227915c6ad7bc5d | p@chr2:179569985..179569993, - |
| 9.38e-99 | FFCP PHASE2:Hg19::chr2:179594654..179594662,-#_ba192c92360fb4144227915c6ad7bc5d | p@chr2:179594654..179594662, - |
| 9.38e-99 | FFCP PHASE1:Hg19::chr2:179569985..179569993,-#_ba192c92360fb4144227915c6ad7bc5d | p@chr2:179569985..179569993, - |
| 9.38e-99 | FFCP PHASE1:Hg19::chr2:179594654..179594662,-#_ba192c92360fb4144227915c6ad7bc5d | p@chr2:179594654..179594662, - |
| 9.38e-99 | FFCP PHASE2:Hg19::chr2:168105520..168105527,+#_ba192c92360fb4144227915c6ad7bc5d | p45@XIRP2 |
| 9.38e-99 | FFCP PHASE2:Hg19::chr14:20904319..20904328,-#_ba192c92360fb4144227915c6ad7bc5d | p@chr14:20904319..20904328, - |
| 9.38e-99 | FFCP PHASE1:Hg19::chr2:168105520..168105527,+#_ba192c92360fb4144227915c6ad7bc5d | p45@XIRP2 |
| 9.38e-99 | FFCP PHASE2:Hg19::chr2:152520289..152520294,-#_ba192c92360fb4144227915c6ad7bc5d | p@chr2:152520289..152520294, - |
| 9.38e-99 | FFCP PHASE2:Hg19::chr2:179529262..179529271,-#_ba192c92360fb4144227915c6ad7bc5d | p@chr2:179529262..179529271, - |
| 9.38e-99 | FFCP PHASE2:Hg19::chr12:111351081..111351086,-#_ba192c92360fb4144227915c6ad7bc5d | p@chr12:111351081..111351086, - |
| 9.38e-99 | FFCP PHASE1:Hg19::chr14:20904319..20904328,-#_ba192c92360fb4144227915c6ad7bc5d | p@chr14:20904319..20904328, - |
| 9.38e-99 | FFCP PHASE1:Hg19::chr2:179529262..179529271,-#_ba192c92360fb4144227915c6ad7bc5d | p@chr2:179529262..179529271, - |
| 9.38e-99 | FFCP PHASE1:Hg19::chr2:152520289..152520294,-#_ba192c92360fb4144227915c6ad7bc5d | p@chr2:152520289..152520294, - |
| 9.38e-99 | FFCP PHASE2:Hg19::chrX:21672387..21672391,-#_ba192c92360fb4144227915c6ad7bc5d | p@chrX:21672387..21672391, - |
| 9.38e-99 | FFCP PHASE1:Hg19::chrX:21672387..21672391,-#_ba192c92360fb4144227915c6ad7bc5d | p@chrX:21672387..21672391, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:152383493..152383501,-#_94244da6056d4207b2201ad2e6164e86 | p@chr2:152383493..152383501, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_94244da6056d4207b2201ad2e6164e86 | p@chr2:76859417..76859418, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_94244da6056d4207b2201ad2e6164e86 | p@chr7:128483294..128483304, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:10871020..10871032,-#_94244da6056d4207b2201ad2e6164e86 | p26@CSDA |
| 1.55e-98 | FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_94244da6056d4207b2201ad2e6164e86 | p@chr4:186423235..186423240, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_94244da6056d4207b2201ad2e6164e86 | p@chr11:3691037..3691040, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr18:10458574..10458579,-#_94244da6056d4207b2201ad2e6164e86 | p@chr18:10458574..10458579, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_94244da6056d4207b2201ad2e6164e86 | p@chr22:25535147..25535150, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_94244da6056d4207b2201ad2e6164e86 | p@chr22:25535147..25535150, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_94244da6056d4207b2201ad2e6164e86 | p@chr4:85166508..85166512, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_94244da6056d4207b2201ad2e6164e86 | p@chr11:3691037..3691040, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_94244da6056d4207b2201ad2e6164e86 | p@chr10:97176812..97176813, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_94244da6056d4207b2201ad2e6164e86 | p@chr10:79759687..79759690, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_94244da6056d4207b2201ad2e6164e86 | p@chr2:76859417..76859418, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_94244da6056d4207b2201ad2e6164e86 | p@chr7:128483294..128483304, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_94244da6056d4207b2201ad2e6164e86 | p@chr4:186423235..186423240, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_94244da6056d4207b2201ad2e6164e86 | p@chr2:179396370..179396375, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:10871020..10871032,-#_94244da6056d4207b2201ad2e6164e86 | p26@CSDA |
| 1.55e-98 | FFCP PHASE1:Hg19::chr18:10458574..10458579,-#_94244da6056d4207b2201ad2e6164e86 | p@chr18:10458574..10458579, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_94244da6056d4207b2201ad2e6164e86 | p@chr2:179396370..179396375, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:152409955..152409964,-#_94244da6056d4207b2201ad2e6164e86 | p@chr2:152409955..152409964, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:152409955..152409964,-#_94244da6056d4207b2201ad2e6164e86 | p@chr2:152409955..152409964, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Portion of tissue composed of contractile fibers.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
