UBERON:0001467: Difference between revisions
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|located_in= | |located_in= | ||
|name=shoulder | |name=shoulder | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0010708 | |part_of=UBERON:0010708 | ||
Latest revision as of 17:18, 12 September 2014
| Name: | shoulder | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "In human anatomy, the shoulder joint comprises the part of the body where the humerus attaches to the scapula. The shoulder refers to the group of structures in the region of the joint. It is made up of three bones: the clavicle (collarbone), the scapula (shoulder blade), and the humerus (upper arm bone) as well as associated muscles, ligaments and tendons. The articulations between the bones of the shoulder make up the shoulder joints. There are two kinds of cartilage in the joint. The first type is the white cartilage on the ends of the bones (called articular cartilage) which allows the bones to glide and move on each other. When this type of cartilage starts to wear out (a process called arthritis), the joint becomes painful and stiff. The labrum is a second kind of cartilage in the shoulder which is distinctly different from the articular cartilage. This cartilage is more fibrous or rigid than the cartilage on the ends of the ball and socket. Also, this cartilage is also found only around the socket where it is attached. The shoulder must be flexible for the wide range of motion required in the arms and hands and also strong enough to allow for actions such as lifting, pushing and pulling. The compromise between these two functions results in a large number of shoulder problems not faced by other joints such as the hip. [WP,unvetted]." [Wikipedia:Shoulder] | ||
| Xrefs: |
| ||
| Synonyms: |
"articulatio humeri" RELATED LATIN [Wikipedia:Shoulder] "shoulder region" EXACT [] | ||
| Comments: | AO notes: In FMA, the shoulder is part of the pectoral girdle region. in MA, shoulder structures like shoulder joints, bones, nerves etc are part of the shoulder and the forelimb. E.g. humerus is a shoulder bone | ||
| Alt_id: | UBERON:FMA_25202-MA_0000038 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000475(organism subdivision) |
|---|---|
| part_of: | UBERON:0010708(pectoral complex) |
Children
| part of: | UBERON:0001097 (axillary lymph node) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 1063-29H9 (accessory axillary lymph node, adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001467 (shoulder), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.07e-86 | FFCP PHASE2:Mm9::chr4:32325858..32325865,+#_c845dbdcd65e4883ba02d29c8cc39823 | p18@Bach2 |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:104978425..104978430,-#_c845dbdcd65e4883ba02d29c8cc39823 | p@chr12:104978425..104978430, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr16:19235714..19235723,-#_c845dbdcd65e4883ba02d29c8cc39823 | p@chr16:19235714..19235723, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr15:98457062..98457072,+#_c845dbdcd65e4883ba02d29c8cc39823 | p@chr15:98457062..98457072, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:98457062..98457072,+#_c845dbdcd65e4883ba02d29c8cc39823 | p@chr15:98457062..98457072, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:73409774..73409819,+#_c845dbdcd65e4883ba02d29c8cc39823 | p@chr10:73409774..73409819, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr12:104978425..104978430,-#_c845dbdcd65e4883ba02d29c8cc39823 | p@chr12:104978425..104978430, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr15:98457111..98457118,+#_c845dbdcd65e4883ba02d29c8cc39823 | p@chr15:98457111..98457118, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:98457111..98457118,+#_c845dbdcd65e4883ba02d29c8cc39823 | p@chr15:98457111..98457118, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr12:114567506..114567507,-#_c845dbdcd65e4883ba02d29c8cc39823 | p@chr12:114567506..114567507, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:32325858..32325865,+#_c845dbdcd65e4883ba02d29c8cc39823 | p18@Bach2 |
| 3.07e-86 | FFCP PHASE1:Mm9::chr12:93042811..93042816,-#_c845dbdcd65e4883ba02d29c8cc39823 | p@chr12:93042811..93042816, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr16:19235714..19235723,-#_c845dbdcd65e4883ba02d29c8cc39823 | p@chr16:19235714..19235723, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr8:3918216..3918219,-#_c845dbdcd65e4883ba02d29c8cc39823 | p@chr8:3918216..3918219, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr4:122604700..122604706,-#_c845dbdcd65e4883ba02d29c8cc39823 | p@chr4:122604700..122604706, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:37383896..37383899,+#_c845dbdcd65e4883ba02d29c8cc39823 | p2@ENSMUST00000172477 |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:5405967..5405985,+#_c845dbdcd65e4883ba02d29c8cc39823 | p@chr11:5405967..5405985, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:37383896..37383899,+#_c845dbdcd65e4883ba02d29c8cc39823 | p2@ENSMUST00000172477 |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:93042811..93042816,-#_c845dbdcd65e4883ba02d29c8cc39823 | p@chr12:93042811..93042816, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:114567506..114567507,-#_c845dbdcd65e4883ba02d29c8cc39823 | p@chr12:114567506..114567507, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr8:3918216..3918219,-#_c845dbdcd65e4883ba02d29c8cc39823 | p@chr8:3918216..3918219, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:122604700..122604706,-#_c845dbdcd65e4883ba02d29c8cc39823 | p@chr4:122604700..122604706, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:5405967..5405985,+#_c845dbdcd65e4883ba02d29c8cc39823 | p@chr11:5405967..5405985, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:73409774..73409819,+#_c845dbdcd65e4883ba02d29c8cc39823 | p@chr10:73409774..73409819, + |
| 2.74e-44 | FFCP PHASE2:Mm9::chr1:156901987..156901994,-#_138d57bfa8556de7936773ddb1bdd98f | p@chr1:156901987..156901994, - |
| 2.74e-44 | FFCP PHASE2:Mm9::chr4:130488147..130488154,+#_138d57bfa8556de7936773ddb1bdd98f | p@chr4:130488147..130488154, + |
| 2.74e-44 | FFCP PHASE2:Mm9::chr15:100610674..100610678,+#_138d57bfa8556de7936773ddb1bdd98f | p@chr15:100610674..100610678, + |
| 2.74e-44 | FFCP PHASE2:Mm9::chr2:152582794..152582807,+#_138d57bfa8556de7936773ddb1bdd98f | p@chr2:152582794..152582807, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr6:129628862..129628871,-#_138d57bfa8556de7936773ddb1bdd98f | p@chr6:129628862..129628871, - |
| 2.74e-44 | FFCP PHASE1:Mm9::chr3:87316559..87316571,-#_138d57bfa8556de7936773ddb1bdd98f | p@chr3:87316559..87316571, - |
| 2.74e-44 | FFCP PHASE1:Mm9::chr2:152582794..152582807,+#_138d57bfa8556de7936773ddb1bdd98f | p@chr2:152582794..152582807, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr6:127022920..127022928,+#_138d57bfa8556de7936773ddb1bdd98f | p1@Fgf23 |
| 2.74e-44 | FFCP PHASE2:Mm9::chr3:87316559..87316571,-#_138d57bfa8556de7936773ddb1bdd98f | p@chr3:87316559..87316571, - |
| 2.74e-44 | FFCP PHASE2:Mm9::chr6:129628862..129628871,-#_138d57bfa8556de7936773ddb1bdd98f | p@chr6:129628862..129628871, - |
| 2.74e-44 | FFCP PHASE2:Mm9::chr6:127022920..127022928,+#_138d57bfa8556de7936773ddb1bdd98f | p1@Fgf23 |
| 2.74e-44 | FFCP PHASE1:Mm9::chr1:156901987..156901994,-#_138d57bfa8556de7936773ddb1bdd98f | p@chr1:156901987..156901994, - |
| 2.74e-44 | FFCP PHASE1:Mm9::chr15:100610674..100610678,+#_138d57bfa8556de7936773ddb1bdd98f | p@chr15:100610674..100610678, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr4:130488147..130488154,+#_138d57bfa8556de7936773ddb1bdd98f | p@chr4:130488147..130488154, + |
| 7.47e-44 | FFCP PHASE1:Mm9::chr13:83714297..83714301,+#_add8541c636b2310567607e768c90ab1 | p@chr13:83714297..83714301, + |
| 7.47e-44 | FFCP PHASE1:Mm9::chr2:26524291..26524300,-#_add8541c636b2310567607e768c90ab1 | p@chr2:26524291..26524300, - |
| 7.47e-44 | FFCP PHASE1:Mm9::chr17:73460572..73460579,+#_add8541c636b2310567607e768c90ab1 | p@chr17:73460572..73460579, + |
| 7.47e-44 | FFCP PHASE1:Mm9::chrX:13200511..13200521,+#_add8541c636b2310567607e768c90ab1 | p@chrX:13200511..13200521, + |
| 7.47e-44 | FFCP PHASE2:Mm9::chr2:70769189..70769223,+#_add8541c636b2310567607e768c90ab1 | p@chr2:70769189..70769223, + |
| 7.47e-44 | FFCP PHASE1:Mm9::chr2:70769189..70769223,+#_add8541c636b2310567607e768c90ab1 | p@chr2:70769189..70769223, + |
| 7.47e-44 | FFCP PHASE2:Mm9::chrX:7157626..7157635,+#_add8541c636b2310567607e768c90ab1 | p3@Foxp3 |
| 7.47e-44 | FFCP PHASE1:Mm9::chr17:73506745..73506750,+#_add8541c636b2310567607e768c90ab1 | p@chr17:73506745..73506750, + |
| 7.47e-44 | FFCP PHASE1:Mm9::chr1:69594451..69594464,-#_add8541c636b2310567607e768c90ab1 | p@chr1:69594451..69594464, - |
| 7.47e-44 | FFCP PHASE1:Mm9::chr5:111607677..111607689,-#_add8541c636b2310567607e768c90ab1 | p@chr5:111607677..111607689, - |
| 7.47e-44 | FFCP PHASE1:Mm9::chr1:156901880..156901891,-#_add8541c636b2310567607e768c90ab1 | p@chr1:156901880..156901891, - |
| 7.47e-44 | FFCP PHASE1:Mm9::chr8:22042143..22042150,-#_add8541c636b2310567607e768c90ab1 | p1@Gm15056, p1@LOC100504014 |
| 7.47e-44 | FFCP PHASE2:Mm9::chr5:111607677..111607689,-#_add8541c636b2310567607e768c90ab1 | p@chr5:111607677..111607689, - |
| 7.47e-44 | FFCP PHASE1:Mm9::chrX:7157626..7157635,+#_add8541c636b2310567607e768c90ab1 | p3@Foxp3 |
| 7.47e-44 | FFCP PHASE2:Mm9::chr17:73460572..73460579,+#_add8541c636b2310567607e768c90ab1 | p@chr17:73460572..73460579, + |
| 7.47e-44 | FFCP PHASE2:Mm9::chr8:22042143..22042150,-#_add8541c636b2310567607e768c90ab1 | p1@Gm15056, p1@LOC100504014 |
| 7.47e-44 | FFCP PHASE2:Mm9::chr1:156901880..156901891,-#_add8541c636b2310567607e768c90ab1 | p@chr1:156901880..156901891, - |
| 7.47e-44 | FFCP PHASE2:Mm9::chr13:83714297..83714301,+#_add8541c636b2310567607e768c90ab1 | p@chr13:83714297..83714301, + |
| 7.47e-44 | FFCP PHASE2:Mm9::chr1:69594451..69594464,-#_add8541c636b2310567607e768c90ab1 | p@chr1:69594451..69594464, - |
| 7.47e-44 | FFCP PHASE2:Mm9::chrX:13200511..13200521,+#_add8541c636b2310567607e768c90ab1 | p@chrX:13200511..13200521, + |
| 7.47e-44 | FFCP PHASE2:Mm9::chr2:26524291..26524300,-#_add8541c636b2310567607e768c90ab1 | p@chr2:26524291..26524300, - |
| 7.47e-44 | FFCP PHASE2:Mm9::chr17:73506745..73506750,+#_add8541c636b2310567607e768c90ab1 | p@chr17:73506745..73506750, + |
| 2.87e-30 | FFCP PHASE2:Mm9::chr16:19236303..19236306,-#_ea30aadc378b1a23609126d6a33775a6 | p@chr16:19236303..19236306, - |
| 2.87e-30 | FFCP PHASE2:Mm9::chr3:60276705..60276708,+#_ea30aadc378b1a23609126d6a33775a6 | p35@Mbnl1 |
| 2.87e-30 | FFCP PHASE1:Mm9::chr2:153750777..153750817,+#_ea30aadc378b1a23609126d6a33775a6 | p@chr2:153750777..153750817, + |
| 2.87e-30 | FFCP PHASE2:Mm9::chr2:153750777..153750817,+#_ea30aadc378b1a23609126d6a33775a6 | p@chr2:153750777..153750817, + |
| 2.87e-30 | FFCP PHASE1:Mm9::chr17:75917733..75917762,-#_ea30aadc378b1a23609126d6a33775a6 | p@chr17:75917733..75917762, - |
| 2.87e-30 | FFCP PHASE2:Mm9::chr17:75917733..75917762,-#_ea30aadc378b1a23609126d6a33775a6 | p@chr17:75917733..75917762, - |
| 2.87e-30 | FFCP PHASE1:Mm9::chr10:77555495..77555503,-#_ea30aadc378b1a23609126d6a33775a6 | p@chr10:77555495..77555503, - |
| 2.87e-30 | FFCP PHASE2:Mm9::chr9:63685871..63685874,-#_ea30aadc378b1a23609126d6a33775a6 | p@chr9:63685871..63685874, - |
| 2.87e-30 | FFCP PHASE1:Mm9::chr1:175421064..175421071,-#_ea30aadc378b1a23609126d6a33775a6 | p@chr1:175421064..175421071, - |
| 2.87e-30 | FFCP PHASE2:Mm9::chr10:77555495..77555503,-#_ea30aadc378b1a23609126d6a33775a6 | p@chr10:77555495..77555503, - |
| 2.87e-30 | FFCP PHASE1:Mm9::chr9:63685871..63685874,-#_ea30aadc378b1a23609126d6a33775a6 | p@chr9:63685871..63685874, - |
| 2.87e-30 | FFCP PHASE2:Mm9::chr6:43026981..43026982,-#_ea30aadc378b1a23609126d6a33775a6 | p@chr6:43026981..43026982, - |
| 2.87e-30 | FFCP PHASE2:Mm9::chr1:175421064..175421071,-#_ea30aadc378b1a23609126d6a33775a6 | p@chr1:175421064..175421071, - |
| 2.87e-30 | FFCP PHASE1:Mm9::chr16:19236303..19236306,-#_ea30aadc378b1a23609126d6a33775a6 | p@chr16:19236303..19236306, - |
| 2.87e-30 | FFCP PHASE1:Mm9::chr3:60276705..60276708,+#_ea30aadc378b1a23609126d6a33775a6 | p35@Mbnl1 |
| 2.87e-30 | FFCP PHASE1:Mm9::chr6:43026981..43026982,-#_ea30aadc378b1a23609126d6a33775a6 | p@chr6:43026981..43026982, - |
| 2.87e-30 | FFCP PHASE2:Mm9::chr14:101862396..101862406,-#_ea30aadc378b1a23609126d6a33775a6 | p7@Tbc1d4 |
| 2.87e-30 | FFCP PHASE1:Mm9::chr14:101862396..101862406,-#_ea30aadc378b1a23609126d6a33775a6 | p7@Tbc1d4 |
| 5.62e-30 | FFCP PHASE2:Mm9::chrX:7156827..7156838,+#_9b0d4d3c52f8717ff106d22e9a9bcb49 | p2@Foxp3 |
| 5.62e-30 | FFCP PHASE2:Mm9::chr10:96058243..96058251,-#_9b0d4d3c52f8717ff106d22e9a9bcb49 | p@chr10:96058243..96058251, - |
| 5.62e-30 | FFCP PHASE1:Mm9::chr17:65245146..65245162,+#_9b0d4d3c52f8717ff106d22e9a9bcb49 | p@chr17:65245146..65245162, + |
| 5.62e-30 | FFCP PHASE1:Mm9::chr12:3463400..3463409,+#_9b0d4d3c52f8717ff106d22e9a9bcb49 | p@chr12:3463400..3463409, + |
| 5.62e-30 | FFCP PHASE2:Mm9::chr5:68157953..68157957,-#_9b0d4d3c52f8717ff106d22e9a9bcb49 | p@chr5:68157953..68157957, - |
| 5.62e-30 | FFCP PHASE1:Mm9::chr15:27700724..27700733,+#_9b0d4d3c52f8717ff106d22e9a9bcb49 | p@chr15:27700724..27700733, + |
| 5.62e-30 | FFCP PHASE1:Mm9::chrX:7156827..7156838,+#_9b0d4d3c52f8717ff106d22e9a9bcb49 | p2@Foxp3 |
| 5.62e-30 | FFCP PHASE2:Mm9::chr12:3463400..3463409,+#_9b0d4d3c52f8717ff106d22e9a9bcb49 | p@chr12:3463400..3463409, + |
| 5.62e-30 | FFCP PHASE2:Mm9::chr17:65245146..65245162,+#_9b0d4d3c52f8717ff106d22e9a9bcb49 | p@chr17:65245146..65245162, + |
| 5.62e-30 | FFCP PHASE2:Mm9::chr13:93865596..93865618,+#_9b0d4d3c52f8717ff106d22e9a9bcb49 | p@chr13:93865596..93865618, + |
| 5.62e-30 | FFCP PHASE2:Mm9::chr16:18588911..18588925,-#_9b0d4d3c52f8717ff106d22e9a9bcb49 | p@chr16:18588911..18588925, - |
| 5.62e-30 | FFCP PHASE2:Mm9::chr15:27700724..27700733,+#_9b0d4d3c52f8717ff106d22e9a9bcb49 | p@chr15:27700724..27700733, + |
| 5.62e-30 | FFCP PHASE1:Mm9::chr5:68157953..68157957,-#_9b0d4d3c52f8717ff106d22e9a9bcb49 | p@chr5:68157953..68157957, - |
| 5.62e-30 | FFCP PHASE1:Mm9::chr16:18588911..18588925,-#_9b0d4d3c52f8717ff106d22e9a9bcb49 | p@chr16:18588911..18588925, - |
| 5.62e-30 | FFCP PHASE1:Mm9::chr10:96058243..96058251,-#_9b0d4d3c52f8717ff106d22e9a9bcb49 | p@chr10:96058243..96058251, - |
| 5.62e-30 | FFCP PHASE1:Mm9::chr1:69595291..69595300,-#_9b0d4d3c52f8717ff106d22e9a9bcb49 | p@chr1:69595291..69595300, - |
| 5.62e-30 | FFCP PHASE1:Mm9::chr13:93865596..93865618,+#_9b0d4d3c52f8717ff106d22e9a9bcb49 | p@chr13:93865596..93865618, + |
| 5.62e-30 | FFCP PHASE1:Mm9::chr1:152303107..152303115,-#_9b0d4d3c52f8717ff106d22e9a9bcb49 | p@chr1:152303107..152303115, - |
| 5.62e-30 | FFCP PHASE2:Mm9::chr1:152303107..152303115,-#_9b0d4d3c52f8717ff106d22e9a9bcb49 | p@chr1:152303107..152303115, - |
| 5.62e-30 | FFCP PHASE2:Mm9::chr1:69595291..69595300,-#_9b0d4d3c52f8717ff106d22e9a9bcb49 | p@chr1:69595291..69595300, - |
| 1.1e-29 | FFCP PHASE1:Mm9::chr11:75828956..75828969,-#_8dad571235c7b24b8469aaf8fe2cb4b1 | p@chr11:75828956..75828969, - |
| 1.1e-29 | FFCP PHASE2:Mm9::chr15:78325671..78325681,-#_8dad571235c7b24b8469aaf8fe2cb4b1 | p4@Il2rb |
