UBERON:0001343: Difference between revisions
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|located_in= | |located_in= | ||
|name=seminiferous tubule of testis | |name=seminiferous tubule of testis | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000473 | |part_of=UBERON:0000473 | ||
Latest revision as of 17:17, 12 September 2014
| Name: | seminiferous tubule of testis | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Seminiferous tubules are located in the testicles, and are the specific location of meiosis, and the subsequent creation of gametes, namely spermatozoa. The epithelium of the tubule consists of sustentacular or Sertoli cells, which are tall, columnar type cells that line the tubule. In between the Sertoli cells are spermatogenic cells, which differentiate through meiosis to sperm cells. There are two types: convoluted and straight. convuluted towards the lateral side and straight as the tubule comes medially to form ducts which will exit the testis. [WP,unvetted]." [Wikipedia:Seminiferous_tubule] | ||
| Xrefs: |
| ||
| Synonyms: |
"seminiferous cord" EXACT [EMAPA:18685] "seminiferous tubule" EXACT [] "testis - seminiferous tubule" EXACT [] "tubuli seminiferi" EXACT [] "tubuli seminiferi" RELATED LATIN [Wikipedia:Seminiferous_tubule] | ||
| Alt_id: | UBERON:FMA_19825-XAO_0003088 | ||
| Subset: | uberon_slim |
200px-Gray1145.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005904(duct of male reproductive system) |
|---|---|
| develops_from: | UBERON:0005297(testis sex cord) |
| part_of: | UBERON:0000473(testis) |
Children
| derives from: | FF:0011471 (mouse epididymis and seminiferous tubule- neonate N30 sample),FF:0011506 (mouse epididymis and seminiferous tubule- neonate N00 sample) |
|---|---|
| part of: | CL:0000216 (Sertoli cell),CL:0002625 (seminiferous tubule epithelial cell),UBERON:0004813 (seminiferous tubule epithelium) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11255-116F4 (Sertoli Cells, donor1)
- 11333-117F1 (Sertoli Cells, donor2)
- 1310-23B1 (epididymis and seminiferous tubule, neonate N00)
- 1387-42A2 (epididymis and seminiferous tubule, neonate N30)
Mouse (Mus musculus)
- 11255-116F4 (Sertoli Cells, donor1)
- 11333-117F1 (Sertoli Cells, donor2)
- 1310-23B1 (epididymis and seminiferous tubule, neonate N00)
- 1387-42A2 (epididymis and seminiferous tubule, neonate N30)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001343 (seminiferous tubule of testis), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE2:Hg19::chr11:27721743..27721753,-#_e6177b5ebd3bd2c28f8f1044c677b99a | p26@BDNF |
| 5.42e-195 | FFCP PHASE1:Hg19::chr11:27721743..27721753,-#_e6177b5ebd3bd2c28f8f1044c677b99a | p26@BDNF |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:227505905..227505906,-#_c8728c8451df9bbfc7a2881358806779 | p43@CDC42BPA |
| 9.37e-99 | FFCP PHASE1:Hg19::chr3:158450428..158450431,-#_c8728c8451df9bbfc7a2881358806779 | p9@RARRES1 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr3:158450428..158450431,-#_c8728c8451df9bbfc7a2881358806779 | p9@RARRES1 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:227505905..227505906,-#_c8728c8451df9bbfc7a2881358806779 | p43@CDC42BPA |
| 2.55e-98 | FFCP PHASE2:Hg19::chr19:40320572..40320586,-#_1f4f956dd582857f6f9f5db61b258d5d | p@chr19:40320572..40320586, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:9519086..9519101,+#_1f4f956dd582857f6f9f5db61b258d5d | p@chr2:9519086..9519101, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:193356854..193356864,+#_1f4f956dd582857f6f9f5db61b258d5d | p@chr3:193356854..193356864, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:170430340..170430344,+#_1f4f956dd582857f6f9f5db61b258d5d | p@chr3:170430340..170430344, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr8:47529304..47529311,-#_1f4f956dd582857f6f9f5db61b258d5d | p@chr8:47529304..47529311, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr7:89874193..89874199,+#_1f4f956dd582857f6f9f5db61b258d5d | p7@C7orf63 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr8:69832864..69832865,+#_1f4f956dd582857f6f9f5db61b258d5d | p@chr8:69832864..69832865, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr8:47529304..47529311,-#_1f4f956dd582857f6f9f5db61b258d5d | p@chr8:47529304..47529311, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr13:53030077..53030083,-#_1f4f956dd582857f6f9f5db61b258d5d | p@chr13:53030077..53030083, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr19:54600897..54600899,+#_1f4f956dd582857f6f9f5db61b258d5d | p@chr19:54600897..54600899, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr19:40320572..40320586,-#_1f4f956dd582857f6f9f5db61b258d5d | p@chr19:40320572..40320586, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr13:53030077..53030083,-#_1f4f956dd582857f6f9f5db61b258d5d | p@chr13:53030077..53030083, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr7:18206831..18206833,+#_1f4f956dd582857f6f9f5db61b258d5d | p@chr7:18206831..18206833, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:193356854..193356864,+#_1f4f956dd582857f6f9f5db61b258d5d | p@chr3:193356854..193356864, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr19:54600897..54600899,+#_1f4f956dd582857f6f9f5db61b258d5d | p@chr19:54600897..54600899, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:170430340..170430344,+#_1f4f956dd582857f6f9f5db61b258d5d | p@chr3:170430340..170430344, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr8:69832864..69832865,+#_1f4f956dd582857f6f9f5db61b258d5d | p@chr8:69832864..69832865, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:9519086..9519101,+#_1f4f956dd582857f6f9f5db61b258d5d | p@chr2:9519086..9519101, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr7:18206831..18206833,+#_1f4f956dd582857f6f9f5db61b258d5d | p@chr7:18206831..18206833, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr7:89874193..89874199,+#_1f4f956dd582857f6f9f5db61b258d5d | p7@C7orf63 |
| 1.23e-66 | FFCP PHASE2:Hg19::chr2:19551668..19551679,-#_48920e7f29a6b1768024e49874b8691f | p@chr2:19551668..19551679, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr2:19551668..19551679,-#_48920e7f29a6b1768024e49874b8691f | p@chr2:19551668..19551679, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr1:197889533..197889548,+#_d7348263c7f815cf58dcb1c080973a1f | p@chr1:197889533..197889548, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr2:72803155..72803204,-#_d7348263c7f815cf58dcb1c080973a1f | p@chr2:72803155..72803204, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr12:15815732..15815744,-#_d7348263c7f815cf58dcb1c080973a1f | p21@EPS8 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr12:15815732..15815744,-#_d7348263c7f815cf58dcb1c080973a1f | p21@EPS8 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr7:98445585..98445594,-#_d7348263c7f815cf58dcb1c080973a1f | p22@TMEM130 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr3:112931461..112931474,-#_d7348263c7f815cf58dcb1c080973a1f | p@chr3:112931461..112931474, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr3:112931461..112931474,-#_d7348263c7f815cf58dcb1c080973a1f | p@chr3:112931461..112931474, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr1:197889533..197889548,+#_d7348263c7f815cf58dcb1c080973a1f | p@chr1:197889533..197889548, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr7:98445585..98445594,-#_d7348263c7f815cf58dcb1c080973a1f | p22@TMEM130 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr2:72803155..72803204,-#_d7348263c7f815cf58dcb1c080973a1f | p@chr2:72803155..72803204, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr10:1034666..1034675,+#_583b5a2133afe5be76929d498d542e7a | p4@GTPBP4 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr5:90830481..90830492,+#_583b5a2133afe5be76929d498d542e7a | p@chr5:90830481..90830492, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr10:1034666..1034675,+#_583b5a2133afe5be76929d498d542e7a | p4@GTPBP4 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr8:141728731..141728740,-#_583b5a2133afe5be76929d498d542e7a | p38@PTK2 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_583b5a2133afe5be76929d498d542e7a | p@chr5:75912402..75912418, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr3:99984127..99984138,+#_583b5a2133afe5be76929d498d542e7a | p@chr3:99984127..99984138, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr5:90830481..90830492,+#_583b5a2133afe5be76929d498d542e7a | p@chr5:90830481..90830492, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr3:170916991..170916995,-#_583b5a2133afe5be76929d498d542e7a | p@chr3:170916991..170916995, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr21:48080873..48080878,+#_583b5a2133afe5be76929d498d542e7a | p@chr21:48080873..48080878, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr21:48080873..48080878,+#_583b5a2133afe5be76929d498d542e7a | p@chr21:48080873..48080878, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr8:141728731..141728740,-#_583b5a2133afe5be76929d498d542e7a | p38@PTK2 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_583b5a2133afe5be76929d498d542e7a | p@chr5:75912402..75912418, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr3:99984127..99984138,+#_583b5a2133afe5be76929d498d542e7a | p@chr3:99984127..99984138, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr3:170916991..170916995,-#_583b5a2133afe5be76929d498d542e7a | p@chr3:170916991..170916995, - |
| 6.41e-58 | FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_c133c470e5acb18ed9dad64cfc831adf | p4@Spink12 |
| 6.41e-58 | FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_c133c470e5acb18ed9dad64cfc831adf | p4@Spink12 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr2:177009137..177009140,+#_5adea3f77ed382f8a04ddefefabb1033 | p@chr2:177009137..177009140, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr6:134210772..134210782,+#_5adea3f77ed382f8a04ddefefabb1033 | p8@TCF21 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr6:134210772..134210782,+#_5adea3f77ed382f8a04ddefefabb1033 | p8@TCF21 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr2:177009137..177009140,+#_5adea3f77ed382f8a04ddefefabb1033 | p@chr2:177009137..177009140, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr11:114173606..114173612,+#_5adea3f77ed382f8a04ddefefabb1033 | p@chr11:114173606..114173612, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr11:114173606..114173612,+#_5adea3f77ed382f8a04ddefefabb1033 | p@chr11:114173606..114173612, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr3:46477553..46477563,-#_0826d2eba7af8961233437fbcf5b629f | p@chr3:46477553..46477563, - |
| 2.42e-50 | FFCP PHASE1:Hg19::chr5:144875561..144875565,+#_0826d2eba7af8961233437fbcf5b629f | p@chr5:144875561..144875565, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr7:137564648..137564658,-#_0826d2eba7af8961233437fbcf5b629f | p32@CREB3L2 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr19:54024454..54024463,+#_0826d2eba7af8961233437fbcf5b629f | p31@ZNF331 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr5:144875561..144875565,+#_0826d2eba7af8961233437fbcf5b629f | p@chr5:144875561..144875565, + |
| 2.42e-50 | FFCP PHASE2:Hg19::chr7:137564648..137564658,-#_0826d2eba7af8961233437fbcf5b629f | p32@CREB3L2 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr21:17214724..17214740,+#_0826d2eba7af8961233437fbcf5b629f | p11@USP25 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr2:55459485..55459491,-#_0826d2eba7af8961233437fbcf5b629f | p6@C2orf63 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr3:46477553..46477563,-#_0826d2eba7af8961233437fbcf5b629f | p@chr3:46477553..46477563, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr19:54024454..54024463,+#_0826d2eba7af8961233437fbcf5b629f | p31@ZNF331 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr21:17214724..17214740,+#_0826d2eba7af8961233437fbcf5b629f | p11@USP25 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr2:55459485..55459491,-#_0826d2eba7af8961233437fbcf5b629f | p6@C2orf63 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr15:39288691..39288698,+#_0826d2eba7af8961233437fbcf5b629f | p@chr15:39288691..39288698, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr15:39288691..39288698,+#_0826d2eba7af8961233437fbcf5b629f | p@chr15:39288691..39288698, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr4:103969123..103969127,-#_5bb3bb3a52e2ebfe02e666b89c2181f2 | p@chr4:103969123..103969127, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr12:5198350..5198359,+#_5bb3bb3a52e2ebfe02e666b89c2181f2 | p@chr12:5198350..5198359, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr12:5198350..5198359,+#_5bb3bb3a52e2ebfe02e666b89c2181f2 | p@chr12:5198350..5198359, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr11:829412..829430,+#_5bb3bb3a52e2ebfe02e666b89c2181f2 | p11@EFCAB4A |
| 3.99e-50 | FFCP PHASE1:Hg19::chr14:64804787..64804796,-#_5bb3bb3a52e2ebfe02e666b89c2181f2 | p10@ESR2 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr15:39420650..39420666,+#_5bb3bb3a52e2ebfe02e666b89c2181f2 | p@chr15:39420650..39420666, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr15:39420650..39420666,+#_5bb3bb3a52e2ebfe02e666b89c2181f2 | p@chr15:39420650..39420666, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr14:64804787..64804796,-#_5bb3bb3a52e2ebfe02e666b89c2181f2 | p10@ESR2 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr11:829412..829430,+#_5bb3bb3a52e2ebfe02e666b89c2181f2 | p11@EFCAB4A |
| 3.99e-50 | FFCP PHASE1:Hg19::chr4:103969123..103969127,-#_5bb3bb3a52e2ebfe02e666b89c2181f2 | p@chr4:103969123..103969127, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr17:58165788..58165794,-#_ff8dc9874e9032fddac9acf0ea43c4f8 | p1@LOC645638 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr16:1203194..1203207,+#_ff8dc9874e9032fddac9acf0ea43c4f8 | p3@CACNA1H |
| 6.58e-50 | FFCP PHASE1:Hg19::chr7:92462738..92462749,-#_ff8dc9874e9032fddac9acf0ea43c4f8 | p51@CDK6 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr14:50697797..50697820,-#_ff8dc9874e9032fddac9acf0ea43c4f8 | p13@SOS2 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr14:50697797..50697820,-#_ff8dc9874e9032fddac9acf0ea43c4f8 | p13@SOS2 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr17:58165788..58165794,-#_ff8dc9874e9032fddac9acf0ea43c4f8 | p1@LOC645638 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr7:92462738..92462749,-#_ff8dc9874e9032fddac9acf0ea43c4f8 | p51@CDK6 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr16:1203194..1203207,+#_ff8dc9874e9032fddac9acf0ea43c4f8 | p3@CACNA1H |
| 4.52e-44 | FFCP PHASE1:Mm9::chr17:75581992..75582009,+#_5b2fed591b04b97e73acb4dcf8a3dbab | p@chr17:75581992..75582009, + |
| 4.52e-44 | FFCP PHASE2:Mm9::chr17:75581992..75582009,+#_5b2fed591b04b97e73acb4dcf8a3dbab | p@chr17:75581992..75582009, + |
| 6.62e-41 | FFCP PHASE1:Hg19::chr3:194214959..194214968,-#_97edfc0aac2af46dfb0732d3a12b0141 | p@chr3:194214959..194214968, - |
| 6.62e-41 | FFCP PHASE2:Hg19::chr3:194214959..194214968,-#_97edfc0aac2af46dfb0732d3a12b0141 | p@chr3:194214959..194214968, - |
| 9.91e-41 | FFCP PHASE2:Hg19::chr8:125193673..125193689,-#_6bf59b44454d936bf3f722a33563cf9e | p@chr8:125193673..125193689, - |
| 9.91e-41 | FFCP PHASE2:Hg19::chr3:49139102..49139119,-#_6bf59b44454d936bf3f722a33563cf9e | p@chr3:49139102..49139119, - |
| 9.91e-41 | FFCP PHASE2:Hg19::chr15:34522001..34522013,+#_6bf59b44454d936bf3f722a33563cf9e | p@chr15:34522001..34522013, + |
| 9.91e-41 | FFCP PHASE1:Hg19::chr15:34522001..34522013,+#_6bf59b44454d936bf3f722a33563cf9e | p@chr15:34522001..34522013, + |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Any of the coiled tubules located in the testes in which spermatozoa are produced.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
