UBERON:0001255: Difference between revisions
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|located_in= | |located_in= | ||
|name=urinary bladder | |name=urinary bladder | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001556 | |part_of=UBERON:0001556 | ||
Latest revision as of 17:17, 12 September 2014
| Name: | urinary bladder | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Organ with organ cavity which is continuous proximally with the right and left ureters and distally with the urethra." [FMA:15900, Wikipedia:Urinary_bladder] | ||
| Xrefs: |
| ||
| Synonyms: |
"bladder" EXACT [] "excretory canal" BROAD [] "vesica urinaria" RELATED LATIN [Wikipedia:Urinary_bladder] | ||
| Comments: | editor note: consider adding a 'bladder' grouping class | ||
| Alt_id: | UBERON:FMA_15900-FMA_7203-MA_0000368-MA_0000380-MIAA_0000118-MIAA_0000119-MIAA_0000122-WBbt_0005775-XAO_0000154-ZFA_0000529 | ||
| Subset: |
major_organ organ_slim uberon_slim |
200px-Urinary_system.svg.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000489(cavitated compound organ),UBERON:0002075(viscus),UBERON:0004120(mesoderm-derived structure),UBERON:0006554(urinary system structure) |
|---|---|
| develops_from: | UBERON:0000164(primitive urogenital sinus) |
| part_of: | UBERON:0001556(lower urinary tract) |
Children
| derives from: | FF:0010011 (human bladder - adult sample),FF:0011437 (mouse urinary bladder- adult sample) |
|---|---|
| part of: | UBERON:0001256 (wall of urinary bladder),UBERON:0001259 (mucosa of urinary bladder),CL:0002597 (smooth muscle cell of bladder),UBERON:0004645 (urinary bladder urothelium),CL:1001319 (bladder cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10011-101C2 (bladder, adult, pool1)
- 10418-106C4 (transitional-cell carcinoma cell line:5637)
- 10565-108A7
- 10587-108D2
- 10751-110D4
- 11519-119H7 (Smooth Muscle Cells - Bladder, donor1)
- 11599-120H6
- 11680-122H6
- 879-12E4 (urinary bladder, adult)
Mouse (Mus musculus)
- 10011-101C2 (bladder, adult, pool1)
- 10418-106C4 (transitional-cell carcinoma cell line:5637)
- 10565-108A7
- 10587-108D2
- 10751-110D4
- 11519-119H7 (Smooth Muscle Cells - Bladder, donor1)
- 11599-120H6
- 11680-122H6
- 879-12E4 (urinary bladder, adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001255 (urinary bladder), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:101282110..101282113,+#_2c05b9049aa6f1d0b902d7807dc6f71d | p@chr15:101282110..101282113, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr5:148796190..148796191,+#_2c05b9049aa6f1d0b902d7807dc6f71d | p@chr5:148796190..148796191, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr9:125155637..125155639,+#_2c05b9049aa6f1d0b902d7807dc6f71d | p@chr9:125155637..125155639, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr5:148796190..148796191,+#_2c05b9049aa6f1d0b902d7807dc6f71d | p@chr5:148796190..148796191, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr9:125155637..125155639,+#_2c05b9049aa6f1d0b902d7807dc6f71d | p@chr9:125155637..125155639, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr17:3808512..3808513,-#_2c05b9049aa6f1d0b902d7807dc6f71d | p@chr17:3808512..3808513, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:3808512..3808513,-#_2c05b9049aa6f1d0b902d7807dc6f71d | p@chr17:3808512..3808513, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:184801068..184801075,-#_2c05b9049aa6f1d0b902d7807dc6f71d | p@chr1:184801068..184801075, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr15:99673979..99673984,+#_2c05b9049aa6f1d0b902d7807dc6f71d | p27@SYNM |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:184801068..184801075,-#_2c05b9049aa6f1d0b902d7807dc6f71d | p@chr1:184801068..184801075, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:99673979..99673984,+#_2c05b9049aa6f1d0b902d7807dc6f71d | p27@SYNM |
| 1.55e-98 | FFCP PHASE2:Hg19::chr10:5660248..5660254,-#_2c05b9049aa6f1d0b902d7807dc6f71d | p2@ENST00000427341 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:5660248..5660254,-#_2c05b9049aa6f1d0b902d7807dc6f71d | p2@ENST00000427341 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr15:101282110..101282113,+#_2c05b9049aa6f1d0b902d7807dc6f71d | p@chr15:101282110..101282113, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr9:109794961..109794968,-#_666dd11fd0d5bfa7db6780f33bf9e653 | p@chr9:109794961..109794968, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr12:80992302..80992309,+#_666dd11fd0d5bfa7db6780f33bf9e653 | p@chr12:80992302..80992309, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr9:109794961..109794968,-#_666dd11fd0d5bfa7db6780f33bf9e653 | p@chr9:109794961..109794968, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:84847637..84847642,+#_666dd11fd0d5bfa7db6780f33bf9e653 | p3@Upk3a |
| 3.07e-86 | FFCP PHASE1:Mm9::chr14:29722238..29722242,-#_666dd11fd0d5bfa7db6780f33bf9e653 | p@chr14:29722238..29722242, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr19:58073599..58073605,+#_666dd11fd0d5bfa7db6780f33bf9e653 | p@chr19:58073599..58073605, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:89595040..89595050,-#_666dd11fd0d5bfa7db6780f33bf9e653 | p@chr11:89595040..89595050, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr9:74005044..74005065,+#_666dd11fd0d5bfa7db6780f33bf9e653 | p@chr9:74005044..74005065, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:44429795..44429800,+#_666dd11fd0d5bfa7db6780f33bf9e653 | p3@Npy6r |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:61188929..61188936,+#_666dd11fd0d5bfa7db6780f33bf9e653 | p@chr10:61188929..61188936, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr9:74005044..74005065,+#_666dd11fd0d5bfa7db6780f33bf9e653 | p@chr9:74005044..74005065, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr19:34791339..34791346,-#_666dd11fd0d5bfa7db6780f33bf9e653 | p@chr19:34791339..34791346, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:24078882..24078896,+#_666dd11fd0d5bfa7db6780f33bf9e653 | p2@Sbp |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:77520043..77520048,+#_666dd11fd0d5bfa7db6780f33bf9e653 | p@chr10:77520043..77520048, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr7:31388578..31388584,-#_666dd11fd0d5bfa7db6780f33bf9e653 | p@chr7:31388578..31388584, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr14:68331267..68331286,-#_666dd11fd0d5bfa7db6780f33bf9e653 | p@chr14:68331267..68331286, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:61188929..61188936,+#_666dd11fd0d5bfa7db6780f33bf9e653 | p@chr10:61188929..61188936, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr7:31388578..31388584,-#_666dd11fd0d5bfa7db6780f33bf9e653 | p@chr7:31388578..31388584, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr14:68331267..68331286,-#_666dd11fd0d5bfa7db6780f33bf9e653 | p@chr14:68331267..68331286, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr15:84847637..84847642,+#_666dd11fd0d5bfa7db6780f33bf9e653 | p3@Upk3a |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:44429795..44429800,+#_666dd11fd0d5bfa7db6780f33bf9e653 | p3@Npy6r |
| 3.07e-86 | FFCP PHASE1:Mm9::chr19:58073599..58073605,+#_666dd11fd0d5bfa7db6780f33bf9e653 | p@chr19:58073599..58073605, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr14:29722238..29722242,-#_666dd11fd0d5bfa7db6780f33bf9e653 | p@chr14:29722238..29722242, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr15:36485068..36485103,-#_666dd11fd0d5bfa7db6780f33bf9e653 | p@chr15:36485068..36485103, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr19:34791339..34791346,-#_666dd11fd0d5bfa7db6780f33bf9e653 | p@chr19:34791339..34791346, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:89595040..89595050,-#_666dd11fd0d5bfa7db6780f33bf9e653 | p@chr11:89595040..89595050, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:77520043..77520048,+#_666dd11fd0d5bfa7db6780f33bf9e653 | p@chr10:77520043..77520048, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:36485068..36485103,-#_666dd11fd0d5bfa7db6780f33bf9e653 | p@chr15:36485068..36485103, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:80992302..80992309,+#_666dd11fd0d5bfa7db6780f33bf9e653 | p@chr12:80992302..80992309, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:24078882..24078896,+#_666dd11fd0d5bfa7db6780f33bf9e653 | p2@Sbp |
| 2.74e-50 | FFCP PHASE1:Hg19::chr3:13992334..13992338,-#_32c08e31778648c4e259c4ac139a6b1d | p@chr3:13992334..13992338, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr16:15850261..15850268,-#_32c08e31778648c4e259c4ac139a6b1d | p@chr16:15850261..15850268, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr4:186567032..186567041,-#_32c08e31778648c4e259c4ac139a6b1d | p@chr4:186567032..186567041, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr6:21664489..21664494,+#_32c08e31778648c4e259c4ac139a6b1d | p@chr6:21664489..21664494, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr16:15850261..15850268,-#_32c08e31778648c4e259c4ac139a6b1d | p@chr16:15850261..15850268, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr4:186567032..186567041,-#_32c08e31778648c4e259c4ac139a6b1d | p@chr4:186567032..186567041, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr6:21666284..21666297,+#_32c08e31778648c4e259c4ac139a6b1d | p26@LINC00340 |
| 2.74e-50 | FFCP PHASE2:Hg19::chr6:21383702..21383704,+#_32c08e31778648c4e259c4ac139a6b1d | p@chr6:21383702..21383704, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr21:39627877..39627884,+#_32c08e31778648c4e259c4ac139a6b1d | p@chr21:39627877..39627884, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr6:21664489..21664494,+#_32c08e31778648c4e259c4ac139a6b1d | p@chr6:21664489..21664494, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr6:21666284..21666297,+#_32c08e31778648c4e259c4ac139a6b1d | p26@LINC00340 |
| 2.74e-50 | FFCP PHASE1:Hg19::chr6:21383702..21383704,+#_32c08e31778648c4e259c4ac139a6b1d | p@chr6:21383702..21383704, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr6:21588091..21588098,-#_32c08e31778648c4e259c4ac139a6b1d | p@chr6:21588091..21588098, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr21:39627877..39627884,+#_32c08e31778648c4e259c4ac139a6b1d | p@chr21:39627877..39627884, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr3:13992334..13992338,-#_32c08e31778648c4e259c4ac139a6b1d | p@chr3:13992334..13992338, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr6:21588091..21588098,-#_32c08e31778648c4e259c4ac139a6b1d | p@chr6:21588091..21588098, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr1:233430709..233430711,+#_e2deef71c9e90bd3a4a86d287f547de3 | p@chr1:233430709..233430711, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr1:233430709..233430711,+#_e2deef71c9e90bd3a4a86d287f547de3 | p@chr1:233430709..233430711, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr6:21876977..21876981,+#_e2deef71c9e90bd3a4a86d287f547de3 | p@chr6:21876977..21876981, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr6:21876977..21876981,+#_e2deef71c9e90bd3a4a86d287f547de3 | p@chr6:21876977..21876981, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr2:135755239..135755248,+#_209c0b79a5bc041797b0c88bca3eb031 | p@chr2:135755239..135755248, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr16:44943814..44943823,+#_209c0b79a5bc041797b0c88bca3eb031 | p4@Cd200r3 |
| 2.74e-44 | FFCP PHASE1:Mm9::chr7:31388822..31388831,-#_209c0b79a5bc041797b0c88bca3eb031 | p@chr7:31388822..31388831, - |
| 2.74e-44 | FFCP PHASE2:Mm9::chr10:76337225..76337243,-#_209c0b79a5bc041797b0c88bca3eb031 | p@chr10:76337225..76337243, - |
| 2.74e-44 | FFCP PHASE1:Mm9::chr16:34922180..34922189,+#_209c0b79a5bc041797b0c88bca3eb031 | p@chr16:34922180..34922189, + |
| 2.74e-44 | FFCP PHASE2:Mm9::chr7:31388822..31388831,-#_209c0b79a5bc041797b0c88bca3eb031 | p@chr7:31388822..31388831, - |
| 2.74e-44 | FFCP PHASE1:Mm9::chr16:38783715..38783726,-#_209c0b79a5bc041797b0c88bca3eb031 | p@chr16:38783715..38783726, - |
| 2.74e-44 | FFCP PHASE1:Mm9::chr15:36485291..36485294,-#_209c0b79a5bc041797b0c88bca3eb031 | p2@Snx31 |
| 2.74e-44 | FFCP PHASE2:Mm9::chr4:117650200..117650211,+#_209c0b79a5bc041797b0c88bca3eb031 | p@chr4:117650200..117650211, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr7:31390216..31390224,-#_209c0b79a5bc041797b0c88bca3eb031 | p@chr7:31390216..31390224, - |
| 2.74e-44 | FFCP PHASE1:Mm9::chr10:76337225..76337243,-#_209c0b79a5bc041797b0c88bca3eb031 | p@chr10:76337225..76337243, - |
| 2.74e-44 | FFCP PHASE2:Mm9::chr7:31390216..31390224,-#_209c0b79a5bc041797b0c88bca3eb031 | p@chr7:31390216..31390224, - |
| 2.74e-44 | FFCP PHASE1:Mm9::chr18:44429732..44429737,+#_209c0b79a5bc041797b0c88bca3eb031 | p2@Npy6r |
| 2.74e-44 | FFCP PHASE1:Mm9::chr2:35519156..35519171,+#_209c0b79a5bc041797b0c88bca3eb031 | p@chr2:35519156..35519171, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr5:92827077..92827083,+#_209c0b79a5bc041797b0c88bca3eb031 | p@chr5:92827077..92827083, + |
| 2.74e-44 | FFCP PHASE2:Mm9::chr10:77520022..77520033,+#_209c0b79a5bc041797b0c88bca3eb031 | p@chr10:77520022..77520033, + |
| 2.74e-44 | FFCP PHASE2:Mm9::chr4:41154091..41154099,-#_209c0b79a5bc041797b0c88bca3eb031 | p@chr4:41154091..41154099, - |
| 2.74e-44 | FFCP PHASE2:Mm9::chr2:35519156..35519171,+#_209c0b79a5bc041797b0c88bca3eb031 | p@chr2:35519156..35519171, + |
| 2.74e-44 | FFCP PHASE2:Mm9::chr16:34922180..34922189,+#_209c0b79a5bc041797b0c88bca3eb031 | p@chr16:34922180..34922189, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr7:31388537..31388547,-#_209c0b79a5bc041797b0c88bca3eb031 | p@chr7:31388537..31388547, - |
| 2.74e-44 | FFCP PHASE2:Mm9::chr7:31388537..31388547,-#_209c0b79a5bc041797b0c88bca3eb031 | p@chr7:31388537..31388547, - |
| 2.74e-44 | FFCP PHASE1:Mm9::chr4:53416435..53416446,-#_209c0b79a5bc041797b0c88bca3eb031 | p1@ENSMUST00000154377 |
| 2.74e-44 | FFCP PHASE2:Mm9::chr5:92827077..92827083,+#_209c0b79a5bc041797b0c88bca3eb031 | p@chr5:92827077..92827083, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr4:117650200..117650211,+#_209c0b79a5bc041797b0c88bca3eb031 | p@chr4:117650200..117650211, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr7:31391935..31391967,+#_209c0b79a5bc041797b0c88bca3eb031 | p@chr7:31391935..31391967, + |
| 2.74e-44 | FFCP PHASE2:Mm9::chr7:31391935..31391967,+#_209c0b79a5bc041797b0c88bca3eb031 | p@chr7:31391935..31391967, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr4:41154091..41154099,-#_209c0b79a5bc041797b0c88bca3eb031 | p@chr4:41154091..41154099, - |
| 2.74e-44 | FFCP PHASE2:Mm9::chr19:34791405..34791413,-#_209c0b79a5bc041797b0c88bca3eb031 | p@chr19:34791405..34791413, - |
| 2.74e-44 | FFCP PHASE2:Mm9::chr5:87332887..87332894,+#_209c0b79a5bc041797b0c88bca3eb031 | p@chr5:87332887..87332894, + |
| 2.74e-44 | FFCP PHASE2:Mm9::chr9:48260437..48260446,+#_209c0b79a5bc041797b0c88bca3eb031 | p@chr9:48260437..48260446, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr5:87332887..87332894,+#_209c0b79a5bc041797b0c88bca3eb031 | p@chr5:87332887..87332894, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr10:77520022..77520033,+#_209c0b79a5bc041797b0c88bca3eb031 | p@chr10:77520022..77520033, + |
| 2.74e-44 | FFCP PHASE2:Mm9::chr2:135755239..135755248,+#_209c0b79a5bc041797b0c88bca3eb031 | p@chr2:135755239..135755248, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr7:31388597..31388604,-#_209c0b79a5bc041797b0c88bca3eb031 | p@chr7:31388597..31388604, - |
| 2.74e-44 | FFCP PHASE2:Mm9::chr7:31388597..31388604,-#_209c0b79a5bc041797b0c88bca3eb031 | p@chr7:31388597..31388604, - |
| 2.74e-44 | FFCP PHASE2:Mm9::chr18:44429732..44429737,+#_209c0b79a5bc041797b0c88bca3eb031 | p2@Npy6r |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical structure which consists of a membranous sac used to temporarily store urine until it is excreted from the body.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
