CL:0000790: Difference between revisions
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|name=immature alpha-beta T cell | |name=immature alpha-beta T cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:37, 12 September 2014
| Name: | immature alpha-beta T cell |
|---|---|
| Namespace: | FANTOM |
| Definition: | "An alpha-beta T cell that has an immature phenotype and has not completed T cell selection." [GOC:add, GOC:tfm, ISBN:0781735149] |
| Synonyms: |
"immature alpha-beta T lymphocyte" EXACT [] "immature alpha-beta T-cell" EXACT [] "immature alpha-beta T-lymphocyte" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000789(alpha-beta T cell),CL:0002420(immature T cell) |
|---|
Children
| is a: | CL:0000809 (double-positive, alpha-beta thymocyte),CL:0000810 (CD4-positive, alpha-beta thymocyte),CL:0000914 (immature NK T cell) |
|---|---|
| develops from: | CL:0000791 (mature alpha-beta T cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000790 (immature alpha-beta T cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.82e-125 | FFCP PHASE1:Hg19::chr5:35859622..35859626,+#_e6c960257014ec9f3b0f1ec3483b4685 | p@chr5:35859622..35859626, + |
| 4.82e-125 | FFCP PHASE2:Hg19::chr5:35859622..35859626,+#_e6c960257014ec9f3b0f1ec3483b4685 | p@chr5:35859622..35859626, + |
| 2.55e-96 | FFCP PHASE2:Hg19::chr15:89179440..89179457,-#_da17c4eaefdc2bdb98187e3fb3a0ae74 | p@chr15:89179440..89179457, - |
| 2.55e-96 | FFCP PHASE1:Hg19::chr15:89179440..89179457,-#_da17c4eaefdc2bdb98187e3fb3a0ae74 | p@chr15:89179440..89179457, - |
| 1.42e-94 | FFCP PHASE1:Hg19::chr5:35854487..35854499,-#_ecdf5399abf09a27d14fdf69181688bb | p@chr5:35854487..35854499, - |
| 1.42e-94 | FFCP PHASE2:Hg19::chr5:35854487..35854499,-#_ecdf5399abf09a27d14fdf69181688bb | p@chr5:35854487..35854499, - |
| 1.09e-92 | FFCP PHASE1:Hg19::chr5:35854779..35854826,+#_422e78d8807de835cb16cf480d724c6d | p@chr5:35854779..35854826, + |
| 1.09e-92 | FFCP PHASE2:Hg19::chr5:35854779..35854826,+#_422e78d8807de835cb16cf480d724c6d | p@chr5:35854779..35854826, + |
| 4.33e-92 | FFCP PHASE2:Hg19::chr4:103551892..103551903,-#_73949685289049ba469eb9401b5c4d2e | p@chr4:103551892..103551903, - |
| 4.33e-92 | FFCP PHASE1:Hg19::chr4:103551892..103551903,-#_73949685289049ba469eb9401b5c4d2e | p@chr4:103551892..103551903, - |
| 1.97e-90 | FFCP PHASE1:Hg19::chr5:35856882..35856909,-#_c13075825743dd1dd4acbdb8239ac84e | p@chr5:35856882..35856909, - |
| 1.97e-90 | FFCP PHASE2:Hg19::chr5:35856882..35856909,-#_c13075825743dd1dd4acbdb8239ac84e | p@chr5:35856882..35856909, - |
| 2.93e-90 | FFCP PHASE2:Hg19::chr18:68318174..68318193,-#_79bb3c1cb26b91ee5f24f37a243a7711 | p1@GTSCR1 |
| 2.93e-90 | FFCP PHASE1:Hg19::chr18:68318174..68318193,-#_79bb3c1cb26b91ee5f24f37a243a7711 | p1@GTSCR1 |
| 5.78e-88 | FFCP PHASE1:Hg19::chr7:97880779..97880793,+#_0d7c9c2cb592d7943685eb717136e20f | p@chr7:97880779..97880793, + |
| 5.78e-88 | FFCP PHASE2:Hg19::chr7:97880779..97880793,+#_0d7c9c2cb592d7943685eb717136e20f | p@chr7:97880779..97880793, + |
| 8.73e-88 | FFCP PHASE1:Hg19::chr1:25255894..25255906,+#_375b337ad2e84ef108f76b7d938b98ba | p@chr1:25255894..25255906, + |
| 8.73e-88 | FFCP PHASE2:Hg19::chr1:25255894..25255906,+#_375b337ad2e84ef108f76b7d938b98ba | p@chr1:25255894..25255906, + |
| 4.59e-87 | FFCP PHASE2:Hg19::chr2:38830433..38830444,-#_e49bc4be3ee9d37ba19a60a712a83f1e | p10@HNRPLL |
| 4.59e-87 | FFCP PHASE1:Hg19::chr2:38830433..38830444,-#_e49bc4be3ee9d37ba19a60a712a83f1e | p10@HNRPLL |
| 1.31e-86 | FFCP PHASE1:Mm9::chr14:54831123..54831141,+#_203e0f2adf58a0ef9882a5850b4ab5af | p1@ENSMUST00000103733 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr4:151490126..151490137,+#_203e0f2adf58a0ef9882a5850b4ab5af | p3@Tnfrsf25 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr4:32339511..32339518,+#_203e0f2adf58a0ef9882a5850b4ab5af | p@chr4:32339511..32339518, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr14:54150421..54150439,+#_203e0f2adf58a0ef9882a5850b4ab5af | p1@uc007tsm.1 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr6:48637679..48637692,+#_203e0f2adf58a0ef9882a5850b4ab5af | p@chr6:48637679..48637692, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr19:10869146..10869168,-#_203e0f2adf58a0ef9882a5850b4ab5af | p@chr19:10869146..10869168, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr14:54150421..54150439,+#_203e0f2adf58a0ef9882a5850b4ab5af | p1@uc007tsm.1 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:99015330..99015341,-#_203e0f2adf58a0ef9882a5850b4ab5af | p@chr11:99015330..99015341, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr19:10869146..10869168,-#_203e0f2adf58a0ef9882a5850b4ab5af | p@chr19:10869146..10869168, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr4:32339511..32339518,+#_203e0f2adf58a0ef9882a5850b4ab5af | p@chr4:32339511..32339518, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:99015330..99015341,-#_203e0f2adf58a0ef9882a5850b4ab5af | p@chr11:99015330..99015341, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_203e0f2adf58a0ef9882a5850b4ab5af | p1@ENSMUST00000103733 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr6:48637679..48637692,+#_203e0f2adf58a0ef9882a5850b4ab5af | p@chr6:48637679..48637692, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr4:151490126..151490137,+#_203e0f2adf58a0ef9882a5850b4ab5af | p3@Tnfrsf25 |
| 2.98e-86 | FFCP PHASE2:Hg19::chr10:14611822..14611844,-#_106efaa98116e05a2f7fa28c5a34f340 | p@chr10:14611822..14611844, - |
| 2.98e-86 | FFCP PHASE1:Hg19::chr10:14611822..14611844,-#_106efaa98116e05a2f7fa28c5a34f340 | p@chr10:14611822..14611844, - |
| 3.57e-86 | FFCP PHASE2:Hg19::chr4:90205082..90205093,+#_4d8ea01efdbd51268fde0731980c0014 | p@chr4:90205082..90205093, + |
| 3.57e-86 | FFCP PHASE1:Hg19::chr4:90205082..90205093,+#_4d8ea01efdbd51268fde0731980c0014 | p@chr4:90205082..90205093, + |
| 9.89e-85 | FFCP PHASE1:Hg19::chr16:57162957..57162973,+#_491942319898bebeee8ab400008d0cc4 | p@chr16:57162957..57162973, + |
| 9.89e-85 | FFCP PHASE2:Hg19::chr16:57162957..57162973,+#_491942319898bebeee8ab400008d0cc4 | p@chr16:57162957..57162973, + |
| 1.01e-83 | FFCP PHASE1:Hg19::chr2:87053288..87053295,-#_26c71318a0dad23d3a9fc12798cc3c6b | p@chr2:87053288..87053295, - |
| 1.01e-83 | FFCP PHASE2:Hg19::chr2:87053288..87053295,-#_26c71318a0dad23d3a9fc12798cc3c6b | p@chr2:87053288..87053295, - |
| 1.1e-83 | FFCP PHASE2:Hg19::chr6:128299606..128299618,+#_e9b7d28ba957183de2fa1af9b1214688 | p@chr6:128299606..128299618, + |
| 1.1e-83 | FFCP PHASE2:Hg19::chr11:122709344..122709378,+#_e9b7d28ba957183de2fa1af9b1214688 | p@chr11:122709344..122709378, + |
| 1.1e-83 | FFCP PHASE1:Hg19::chr11:122709344..122709378,+#_e9b7d28ba957183de2fa1af9b1214688 | p@chr11:122709344..122709378, + |
| 1.1e-83 | FFCP PHASE1:Hg19::chr6:128299606..128299618,+#_e9b7d28ba957183de2fa1af9b1214688 | p@chr6:128299606..128299618, + |
| 1.69e-83 | FFCP PHASE1:Hg19::chr5:35780579..35780585,+#_e1bdef9ad35278de8accf5d62f66b1d4 | p@chr5:35780579..35780585, + |
| 1.69e-83 | FFCP PHASE2:Hg19::chr5:35780579..35780585,+#_e1bdef9ad35278de8accf5d62f66b1d4 | p@chr5:35780579..35780585, + |
| 1.02e-82 | FFCP PHASE1:Hg19::chr5:35859218..35859252,-#_874fc92678ebe1c01fda3dd83b12d078 | p@chr5:35859218..35859252, - |
| 1.02e-82 | FFCP PHASE2:Hg19::chr5:35859218..35859252,-#_874fc92678ebe1c01fda3dd83b12d078 | p@chr5:35859218..35859252, - |
| 1.33e-82 | FFCP PHASE2:Hg19::chr12:49375076..49375089,-#_78dbfd06a63f156aa8d393e7a03d8d00 | p@chr12:49375076..49375089, - |
| 1.33e-82 | FFCP PHASE1:Hg19::chr12:49375076..49375089,-#_78dbfd06a63f156aa8d393e7a03d8d00 | p@chr12:49375076..49375089, - |
| 3.02e-82 | FFCP PHASE2:Hg19::chr10:9060907..9060927,-#_f50af08e5869c89bbafed91911443d39 | p@chr10:9060907..9060927, - |
| 3.02e-82 | FFCP PHASE1:Hg19::chr10:9060907..9060927,-#_f50af08e5869c89bbafed91911443d39 | p@chr10:9060907..9060927, - |
| 4.05e-82 | FFCP PHASE2:Hg19::chr12:10561626..10561641,-#_fb3ef584c86bf0308aea07975f48ec75 | p@chr12:10561626..10561641, - |
| 4.05e-82 | FFCP PHASE1:Hg19::chr12:10561626..10561641,-#_fb3ef584c86bf0308aea07975f48ec75 | p@chr12:10561626..10561641, - |
| 4.31e-82 | FFCP PHASE2:Hg19::chr7:150178764..150178778,-#_84e6548312b91eed0fa55b91e568a896 | p@chr7:150178764..150178778, - |
| 4.31e-82 | FFCP PHASE1:Hg19::chr7:150178764..150178778,-#_84e6548312b91eed0fa55b91e568a896 | p@chr7:150178764..150178778, - |
| 5.81e-82 | FFCP PHASE2:Hg19::chr2:182038499..182038509,+#_4f0398d4e8e47f8f3633c6043e8fa8d0 | p@chr2:182038499..182038509, + |
| 5.81e-82 | FFCP PHASE1:Hg19::chr2:182038499..182038509,+#_4f0398d4e8e47f8f3633c6043e8fa8d0 | p@chr2:182038499..182038509, + |
| 1.02e-81 | FFCP PHASE2:Hg19::chr4:4271366..4271377,-#_0c178b02033f6758db33de1c291b6439 | p@chr4:4271366..4271377, - |
| 1.02e-81 | FFCP PHASE1:Hg19::chr4:4271366..4271377,-#_0c178b02033f6758db33de1c291b6439 | p@chr4:4271366..4271377, - |
| 8.22e-81 | FFCP PHASE2:Hg19::chr11:108094238..108094253,+#_1732ce444bc3b73a474f683378b613ff | p10@ATM |
| 8.22e-81 | FFCP PHASE1:Hg19::chr11:108094238..108094253,+#_1732ce444bc3b73a474f683378b613ff | p10@ATM |
| 2.22e-80 | FFCP PHASE2:Hg19::chr12:12867774..12867787,-#_f605bea605792660c92711700d567b76 | p@chr12:12867774..12867787, - |
| 2.22e-80 | FFCP PHASE1:Hg19::chr12:12867774..12867787,-#_f605bea605792660c92711700d567b76 | p@chr12:12867774..12867787, - |
| 8.6e-79 | FFCP PHASE1:Hg19::chr5:67571114..67571129,-#_d5175924d806a96ef8ade160620c4355 | p@chr5:67571114..67571129, - |
| 8.6e-79 | FFCP PHASE2:Hg19::chr5:67571114..67571129,-#_d5175924d806a96ef8ade160620c4355 | p@chr5:67571114..67571129, - |
| 2.3e-78 | FFCP PHASE1:Mm9::chr14:54811976..54811990,+#_12982197b0a456c3fa36e24c8a0afb04 | p1@ENSMUST00000103714 |
| 2.3e-78 | FFCP PHASE2:Mm9::chr14:54811976..54811990,+#_12982197b0a456c3fa36e24c8a0afb04 | p1@ENSMUST00000103714 |
| 2.3e-78 | FFCP PHASE1:Mm9::chr5:123440486..123440504,-#_12982197b0a456c3fa36e24c8a0afb04 | p@chr5:123440486..123440504, - |
| 2.3e-78 | FFCP PHASE2:Mm9::chr12:74704873..74704900,+#_12982197b0a456c3fa36e24c8a0afb04 | p@chr12:74704873..74704900, + |
| 2.3e-78 | FFCP PHASE1:Mm9::chr14:56207154..56207165,-#_12982197b0a456c3fa36e24c8a0afb04 | p@chr14:56207154..56207165, - |
| 2.3e-78 | FFCP PHASE2:Mm9::chr14:56207154..56207165,-#_12982197b0a456c3fa36e24c8a0afb04 | p@chr14:56207154..56207165, - |
| 2.3e-78 | FFCP PHASE2:Mm9::chr5:123440486..123440504,-#_12982197b0a456c3fa36e24c8a0afb04 | p@chr5:123440486..123440504, - |
| 2.3e-78 | FFCP PHASE2:Mm9::chr7:31935025..31935037,+#_12982197b0a456c3fa36e24c8a0afb04 | p@chr7:31935025..31935037, + |
| 2.3e-78 | FFCP PHASE1:Mm9::chr8:84082784..84082795,+#_12982197b0a456c3fa36e24c8a0afb04 | p@chr8:84082784..84082795, + |
| 2.3e-78 | FFCP PHASE1:Mm9::chr7:31935025..31935037,+#_12982197b0a456c3fa36e24c8a0afb04 | p@chr7:31935025..31935037, + |
| 2.3e-78 | FFCP PHASE1:Mm9::chr12:74704873..74704900,+#_12982197b0a456c3fa36e24c8a0afb04 | p@chr12:74704873..74704900, + |
| 2.3e-78 | FFCP PHASE2:Mm9::chr8:84082784..84082795,+#_12982197b0a456c3fa36e24c8a0afb04 | p@chr8:84082784..84082795, + |
| 2.56e-78 | FFCP PHASE1:Hg19::chr6:143228788..143228799,-#_b458f5e87f53433f1bd1f9b8af9339fc | p@chr6:143228788..143228799, - |
| 2.56e-78 | FFCP PHASE2:Hg19::chr6:143228788..143228799,-#_b458f5e87f53433f1bd1f9b8af9339fc | p@chr6:143228788..143228799, - |
| 2.82e-78 | FFCP PHASE1:Mm9::chr5:123440767..123440778,+#_a52303727c62da45c0c8fd84b0418811 | p@chr5:123440767..123440778, + |
| 2.82e-78 | FFCP PHASE1:Mm9::chr4:32422919..32422935,+#_a52303727c62da45c0c8fd84b0418811 | p@chr4:32422919..32422935, + |
| 2.82e-78 | FFCP PHASE2:Mm9::chr14:54838649..54838660,+#_a52303727c62da45c0c8fd84b0418811 | p@chr14:54838649..54838660, + |
| 2.82e-78 | FFCP PHASE1:Mm9::chr14:54838649..54838660,+#_a52303727c62da45c0c8fd84b0418811 | p@chr14:54838649..54838660, + |
| 2.82e-78 | FFCP PHASE2:Mm9::chr4:32422919..32422935,+#_a52303727c62da45c0c8fd84b0418811 | p@chr4:32422919..32422935, + |
| 2.82e-78 | FFCP PHASE2:Mm9::chr5:123440767..123440778,+#_a52303727c62da45c0c8fd84b0418811 | p@chr5:123440767..123440778, + |
| 3.46e-78 | FFCP PHASE1:Mm9::chr15:27786221..27786240,-#_86771277fc0a14b603cbec14a9b0137d | p@chr15:27786221..27786240, - |
| 3.46e-78 | FFCP PHASE2:Mm9::chr15:27786221..27786240,-#_86771277fc0a14b603cbec14a9b0137d | p@chr15:27786221..27786240, - |
| 4.25e-78 | FFCP PHASE2:Mm9::chr6:99215016..99215036,+#_18386f6541465440cc970f1f17ab7f0b | p@chr6:99215016..99215036, + |
| 4.25e-78 | FFCP PHASE1:Mm9::chr3:103672068..103672090,-#_18386f6541465440cc970f1f17ab7f0b | p@chr3:103672068..103672090, - |
| 4.25e-78 | FFCP PHASE1:Mm9::chr6:99215016..99215036,+#_18386f6541465440cc970f1f17ab7f0b | p@chr6:99215016..99215036, + |
| 4.25e-78 | FFCP PHASE2:Mm9::chr3:103672068..103672090,-#_18386f6541465440cc970f1f17ab7f0b | p@chr3:103672068..103672090, - |
| 5.22e-78 | FFCP PHASE2:Mm9::chr6:48634453..48634468,-#_4725b729f4d10409e0be41c1f6a23fda | p@chr6:48634453..48634468, - |
| 5.22e-78 | FFCP PHASE1:Mm9::chr6:48634453..48634468,-#_4725b729f4d10409e0be41c1f6a23fda | p@chr6:48634453..48634468, - |
| 6.45e-78 | FFCP PHASE1:Hg19::chr7:36816941..36816949,+#_edb57007deb03a703a3ef969cdfb775c | p@chr7:36816941..36816949, + |
| 6.45e-78 | FFCP PHASE2:Hg19::chr7:36816941..36816949,+#_edb57007deb03a703a3ef969cdfb775c | p@chr7:36816941..36816949, + |
| 7.86e-78 | FFCP PHASE1:Mm9::chr15:60018823..60018838,-#_96022322bd8840b69244e476600cf608 | p5@uc007vxz.1 |
| 7.86e-78 | FFCP PHASE2:Mm9::chr15:60018823..60018838,-#_96022322bd8840b69244e476600cf608 | p5@uc007vxz.1 |
