CL:0000669: Difference between revisions
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|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
|name= | |name=pericyte cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:35, 12 September 2014
| Name: | pericyte cell | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "An elongated, contractile cell found wrapped about precapillary arterioles outside the basement membrane. Pericytes are present in capillaries where proper adventitia and muscle layer are missing (thus distingushing this cell type from adventitial cells). They are relatively undifferentiated and may become fibroblasts, macrophages, or smooth muscle cells." [GOC:dsd, GOC:tfm, ISBN:0721662544, MESH:D020286, PMID:16807374, PMID:17986482, PMID:20024907] | ||
| Xrefs: |
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| Synonyms: |
"adventitial cell" RELATED [] "adventitial reticular cell" EXACT [] "ARC" EXACT [PMID:17986482] "cell of Rouget" EXACT [] "pericyte" EXACT [] "pericyte of Rouget" EXACT [] | ||
| Comments: | Pericytes are CD10-positive, CD13-positive, CD31-negative, CD45-negative, CD106-positive, CD117-negative, CD140-positive, CD144-negative, CD146-positive, CD271-positive, CD325-positive, NG2-positive, RGS5-positive, SMA-positive, and desmin-positive. A subpopulation is CD248-positive. They are also capable of producing angiopoietin 1, CXCL12, TGF-beta, and VEGF-A. | ||
| Alt_id: | CL:0000184 |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000183(contractile cell),CL:0000630(supportive cell),CL:0002320(connective tissue cell) |
|---|
Children
| is a: | CL:0000650 (mesangial cell),CL:0002575 (central nervous system pericyte),CL:1001318 (renal interstitial pericyte) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11491-119E6 (Pericytes, donor1)
- 11518-119H6 (Renal Mesangial Cells, donor1)
- 11571-120E5 (Pericytes, donor2)
- 11598-120H5 (Renal Mesangial Cells, donor2)
- 11652-122E5 (Pericytes, donor3)
- 11679-122H5 (Renal Mesangial Cells, donor3)
Mouse (Mus musculus)
- 11491-119E6 (Pericytes, donor1)
- 11518-119H6 (Renal Mesangial Cells, donor1)
- 11571-120E5 (Pericytes, donor2)
- 11598-120H5 (Renal Mesangial Cells, donor2)
- 11652-122E5 (Pericytes, donor3)
- 11679-122H5 (Renal Mesangial Cells, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000669 (pericyte cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.4e-66 | FFCP PHASE2:Hg19::chr15:57598803..57598812,+#_aeec4a401a145916983f5d26cb11d206 | p6@LOC283663 |
| 2.4e-66 | FFCP PHASE1:Hg19::chr15:57598803..57598812,+#_aeec4a401a145916983f5d26cb11d206 | p6@LOC283663 |
| 3.1e-50 | FFCP PHASE1:Hg19::chr18:8054314..8054316,-#_07a266773064eb5884d153ef9f3d7740 | p@chr18:8054314..8054316, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr5:149515832..149515837,-#_07a266773064eb5884d153ef9f3d7740 | p@chr5:149515832..149515837, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr18:8054314..8054316,-#_07a266773064eb5884d153ef9f3d7740 | p@chr18:8054314..8054316, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr13:75493774..75493776,-#_07a266773064eb5884d153ef9f3d7740 | p@chr13:75493774..75493776, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr13:75493774..75493776,-#_07a266773064eb5884d153ef9f3d7740 | p@chr13:75493774..75493776, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr5:149515832..149515837,-#_07a266773064eb5884d153ef9f3d7740 | p@chr5:149515832..149515837, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr12:279860..279871,+#_5ae6c7cd6c8cc5ec888609a4e2114fa1 | p@chr12:279860..279871, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr12:279860..279871,+#_5ae6c7cd6c8cc5ec888609a4e2114fa1 | p@chr12:279860..279871, + |
| 2.22e-40 | FFCP PHASE1:Hg19::chr11:61634723..61634731,+#_e905070ba1ec5fa3fb37603b22b037ac | p@chr11:61634723..61634731, + |
| 2.22e-40 | FFCP PHASE2:Hg19::chr2:133426030..133426041,-#_e905070ba1ec5fa3fb37603b22b037ac | p@chr2:133426030..133426041, - |
| 2.22e-40 | FFCP PHASE1:Hg19::chr2:133426030..133426041,-#_e905070ba1ec5fa3fb37603b22b037ac | p@chr2:133426030..133426041, - |
| 2.22e-40 | FFCP PHASE2:Hg19::chr11:61634723..61634731,+#_e905070ba1ec5fa3fb37603b22b037ac | p@chr11:61634723..61634731, + |
| 2.71e-40 | FFCP PHASE1:Hg19::chr1:51791596..51791607,-#_955f95a6cf04143a460eaa850259aee1 | p23@TTC39A |
| 2.71e-40 | FFCP PHASE2:Hg19::chr1:51791596..51791607,-#_955f95a6cf04143a460eaa850259aee1 | p23@TTC39A |
| 4.94e-40 | FFCP PHASE1:Hg19::chr13:100634777..100634788,+#_5f27ab464d834ccd0fc5fd771973d730 | p13@ZIC2 |
| 4.94e-40 | FFCP PHASE2:Hg19::chr13:100634777..100634788,+#_5f27ab464d834ccd0fc5fd771973d730 | p13@ZIC2 |
| 4.28e-34 | FFCP PHASE2:Hg19::chr17:75471711..75471726,+#_3887052e1655cb3413918fb3c99d3b96 | p73@SEPT9 |
| 4.28e-34 | FFCP PHASE1:Hg19::chr5:149532703..149532711,+#_3887052e1655cb3413918fb3c99d3b96 | p@chr5:149532703..149532711, + |
| 4.28e-34 | FFCP PHASE2:Hg19::chr5:149532703..149532711,+#_3887052e1655cb3413918fb3c99d3b96 | p@chr5:149532703..149532711, + |
| 4.28e-34 | FFCP PHASE1:Hg19::chr17:75471711..75471726,+#_3887052e1655cb3413918fb3c99d3b96 | p73@SEPT9 |
| 7.07e-34 | FFCP PHASE1:Hg19::chr2:133426106..133426117,-#_2ac75917a87dc84f3211b931853d8950 | p@chr2:133426106..133426117, - |
| 7.07e-34 | FFCP PHASE2:Hg19::chr2:133426106..133426117,-#_2ac75917a87dc84f3211b931853d8950 | p@chr2:133426106..133426117, - |
| 8.36e-34 | FFCP PHASE2:Hg19::chr11:62752310..62752313,-#_1ef6c73b80808248189cda402d47e206 | p7@SLC22A6 |
| 8.36e-34 | FFCP PHASE1:Hg19::chr11:62752310..62752313,-#_1ef6c73b80808248189cda402d47e206 | p7@SLC22A6 |
| 1.78e-29 | FFCP PHASE1:Hg19::chr3:147128048..147128057,+#_540f712452258d5e34e35524d573b316 | p4@AB464362 |
| 1.78e-29 | FFCP PHASE2:Hg19::chr3:147109858..147109861,+#_540f712452258d5e34e35524d573b316 | p@chr3:147109858..147109861, + |
| 1.78e-29 | FFCP PHASE1:Hg19::chr5:149537789..149537803,-#_540f712452258d5e34e35524d573b316 | p@chr5:149537789..149537803, - |
| 1.78e-29 | FFCP PHASE2:Hg19::chr3:147128048..147128057,+#_540f712452258d5e34e35524d573b316 | p4@AB464362 |
| 1.78e-29 | FFCP PHASE2:Hg19::chr5:149537789..149537803,-#_540f712452258d5e34e35524d573b316 | p@chr5:149537789..149537803, - |
| 1.78e-29 | FFCP PHASE1:Hg19::chr3:147109858..147109861,+#_540f712452258d5e34e35524d573b316 | p@chr3:147109858..147109861, + |
| 4.21e-29 | FFCP PHASE1:Hg19::chr12:15941738..15941768,+#_a03a35f5fcb2bd234c93c09895b28f4f | p@chr12:15941738..15941768, + |
| 4.21e-29 | FFCP PHASE2:Hg19::chr12:15941738..15941768,+#_a03a35f5fcb2bd234c93c09895b28f4f | p@chr12:15941738..15941768, + |
| 4.86e-29 | FFCP PHASE1:Hg19::chr17:26890530..26890545,-#_84152ef46a4dce4a489e839fbe00354d | p@chr17:26890530..26890545, - |
| 4.86e-29 | FFCP PHASE2:Hg19::chr17:26890530..26890545,-#_84152ef46a4dce4a489e839fbe00354d | p@chr17:26890530..26890545, - |
| 8.39e-27 | FFCP PHASE2:Hg19::chr6:94129519..94129544,+#_28bd2271272ffb18431d1af2555409a5 | p@chr6:94129519..94129544, + |
| 8.39e-27 | FFCP PHASE1:Hg19::chr6:94129519..94129544,+#_28bd2271272ffb18431d1af2555409a5 | p@chr6:94129519..94129544, + |
| 9.17e-27 | FFCP PHASE2:Hg19::chr22:37945945..37945963,+#_dc296454577b29adc0299c2e039f4687 | p1@ENST00000428838 |
| 9.17e-27 | FFCP PHASE1:Hg19::chr22:37945945..37945963,+#_dc296454577b29adc0299c2e039f4687 | p1@ENST00000428838 |
| 5.23e-26 | FFCP PHASE1:Hg19::chr3:147128031..147128038,+#_3cb1f65de5943aab6fe0d4133575c25e | p7@AB464362 |
| 5.23e-26 | FFCP PHASE2:Hg19::chr3:147128031..147128038,+#_3cb1f65de5943aab6fe0d4133575c25e | p7@AB464362 |
| 5.56e-26 | FFCP PHASE1:Hg19::chr11:67186174..67186179,+#_73291a0c52157f46c60d3d7fa45e0080 | p@chr11:67186174..67186179, + |
| 5.56e-26 | FFCP PHASE1:Hg19::chr11:65061637..65061642,+#_73291a0c52157f46c60d3d7fa45e0080 | p13@POLA2 |
| 5.56e-26 | FFCP PHASE2:Hg19::chr11:65061637..65061642,+#_73291a0c52157f46c60d3d7fa45e0080 | p13@POLA2 |
| 5.56e-26 | FFCP PHASE1:Hg19::chr19:48281847..48281853,+#_73291a0c52157f46c60d3d7fa45e0080 | p7@SEPW1 |
| 5.56e-26 | FFCP PHASE2:Hg19::chr11:67186174..67186179,+#_73291a0c52157f46c60d3d7fa45e0080 | p@chr11:67186174..67186179, + |
| 5.56e-26 | FFCP PHASE2:Hg19::chr19:48281847..48281853,+#_73291a0c52157f46c60d3d7fa45e0080 | p7@SEPW1 |
| 6.73e-26 | FFCP PHASE2:Hg19::chr10:102495136..102495146,+#_deae222fb1ef53d2bbbcee9e566a7ea5 | p8@PAX2 |
| 6.73e-26 | FFCP PHASE1:Hg19::chr10:102495136..102495146,+#_deae222fb1ef53d2bbbcee9e566a7ea5 | p8@PAX2 |
| 6.73e-26 | FFCP PHASE2:Hg19::chr10:134535354..134535366,-#_deae222fb1ef53d2bbbcee9e566a7ea5 | p@chr10:134535354..134535366, - |
| 6.73e-26 | FFCP PHASE1:Hg19::chr10:134535354..134535366,-#_deae222fb1ef53d2bbbcee9e566a7ea5 | p@chr10:134535354..134535366, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr8:144875310..144875315,-#_4a4a041d7c5c235f9cecad29771dae26 | p19@SCRIB |
| 7.14e-26 | FFCP PHASE2:Hg19::chr20:32850613..32850632,+#_4a4a041d7c5c235f9cecad29771dae26 | p@chr20:32850613..32850632, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr5:148609626..148609631,+#_4a4a041d7c5c235f9cecad29771dae26 | p@chr5:148609626..148609631, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr17:56614878..56614885,-#_4a4a041d7c5c235f9cecad29771dae26 | p@chr17:56614878..56614885, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr9:81641483..81641491,-#_4a4a041d7c5c235f9cecad29771dae26 | p@chr9:81641483..81641491, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr6:31848961..31848968,-#_4a4a041d7c5c235f9cecad29771dae26 | p@chr6:31848961..31848968, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr17:56614878..56614885,-#_4a4a041d7c5c235f9cecad29771dae26 | p@chr17:56614878..56614885, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr19:48283768..48283781,+#_4a4a041d7c5c235f9cecad29771dae26 | p@chr19:48283768..48283781, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr14:23574150..23574161,-#_4a4a041d7c5c235f9cecad29771dae26 | p2@uc010aki.1 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr14:23574150..23574161,-#_4a4a041d7c5c235f9cecad29771dae26 | p2@uc010aki.1 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr1:201399370..201399380,-#_4a4a041d7c5c235f9cecad29771dae26 | p8@TNNI1 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr8:144875310..144875315,-#_4a4a041d7c5c235f9cecad29771dae26 | p19@SCRIB |
| 7.14e-26 | FFCP PHASE1:Hg19::chr3:165929277..165929294,-#_4a4a041d7c5c235f9cecad29771dae26 | p@chr3:165929277..165929294, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr19:48283768..48283781,+#_4a4a041d7c5c235f9cecad29771dae26 | p@chr19:48283768..48283781, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr5:148609626..148609631,+#_4a4a041d7c5c235f9cecad29771dae26 | p@chr5:148609626..148609631, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr20:32850613..32850632,+#_4a4a041d7c5c235f9cecad29771dae26 | p@chr20:32850613..32850632, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr6:31848961..31848968,-#_4a4a041d7c5c235f9cecad29771dae26 | p@chr6:31848961..31848968, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_4a4a041d7c5c235f9cecad29771dae26 | p10@PAX2 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_4a4a041d7c5c235f9cecad29771dae26 | p10@PAX2 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr9:81641483..81641491,-#_4a4a041d7c5c235f9cecad29771dae26 | p@chr9:81641483..81641491, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr3:165929277..165929294,-#_4a4a041d7c5c235f9cecad29771dae26 | p@chr3:165929277..165929294, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr10:35894364..35894370,+#_4a4a041d7c5c235f9cecad29771dae26 | p4@GJD4 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr10:35894364..35894370,+#_4a4a041d7c5c235f9cecad29771dae26 | p4@GJD4 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr1:201399370..201399380,-#_4a4a041d7c5c235f9cecad29771dae26 | p8@TNNI1 |
| 8.56e-26 | FFCP PHASE1:Hg19::chr17:75446774..75446783,+#_544e4ef0c35f67f4723a7e60e4d7af19 | p49@SEPT9 |
| 8.56e-26 | FFCP PHASE2:Hg19::chr17:75446774..75446783,+#_544e4ef0c35f67f4723a7e60e4d7af19 | p49@SEPT9 |
| 9.82e-26 | FFCP PHASE1:Hg19::chr17:17480803..17480814,-#_e15ce64699966ad0a7c04b32dfd85f98 | p19@PEMT |
| 9.82e-26 | FFCP PHASE2:Hg19::chr17:17480803..17480814,-#_e15ce64699966ad0a7c04b32dfd85f98 | p19@PEMT |
| 1.43e-25 | FFCP PHASE2:Hg19::chr14:98348860..98348862,-#_be025c17982f13f97a86a5e3b0468f3c | p@chr14:98348860..98348862, - |
| 1.43e-25 | FFCP PHASE1:Hg19::chr14:98348860..98348862,-#_be025c17982f13f97a86a5e3b0468f3c | p@chr14:98348860..98348862, - |
| 1.65e-23 | FFCP PHASE1:Hg19::chr1:155224987..155224998,-#_2bf348a8e4c97d62d7dd1a625e2d4541 | p8@FAM189B |
| 1.65e-23 | FFCP PHASE2:Hg19::chr1:155224987..155224998,-#_2bf348a8e4c97d62d7dd1a625e2d4541 | p8@FAM189B |
| 2.63e-23 | FFCP PHASE1:Hg19::chr17:48346424..48346435,+#_419950981da7749abedde04ede78c89c | p@chr17:48346424..48346435, + |
| 2.63e-23 | FFCP PHASE2:Hg19::chr17:48346424..48346435,+#_419950981da7749abedde04ede78c89c | p@chr17:48346424..48346435, + |
| 2.94e-23 | FFCP PHASE1:Hg19::chr11:73020686..73020697,+#_8273fcc573d96e38a068e5e4c6a7ea77 | p23@ARHGEF17 |
| 2.94e-23 | FFCP PHASE2:Hg19::chr11:73020686..73020697,+#_8273fcc573d96e38a068e5e4c6a7ea77 | p23@ARHGEF17 |
| 5.14e-23 | FFCP PHASE2:Hg19::chr11:60680190..60680212,+#_20ee9a99a15fde7a638d1031f3a78ef8 | p@chr11:60680190..60680212, + |
| 5.14e-23 | FFCP PHASE1:Hg19::chr11:60680190..60680212,+#_20ee9a99a15fde7a638d1031f3a78ef8 | p@chr11:60680190..60680212, + |
| 5.75e-23 | FFCP PHASE1:Hg19::chr4:167520111..167520112,-#_be26b6a471af313cc25dbfa59144e438 | p@chr4:167520111..167520112, - |
| 5.75e-23 | FFCP PHASE2:Hg19::chr4:167520111..167520112,-#_be26b6a471af313cc25dbfa59144e438 | p@chr4:167520111..167520112, - |
| 6.42e-23 | FFCP PHASE2:Hg19::chr5:158523468..158523481,-#_90ba5bfe133a310b7175cd0b14445a6e | p20@EBF1 |
| 6.42e-23 | FFCP PHASE1:Hg19::chr5:158523468..158523481,-#_90ba5bfe133a310b7175cd0b14445a6e | p20@EBF1 |
| 7.18e-23 | FFCP PHASE2:Hg19::chr19:46806885..46806888,+#_857b56fe41d81e240c0401e69f0981cc | p11@HIF3A |
| 7.18e-23 | FFCP PHASE1:Hg19::chr19:46806885..46806888,+#_857b56fe41d81e240c0401e69f0981cc | p11@HIF3A |
| 1.0e-22 | FFCP PHASE2:Hg19::chr11:2179591..2179596,-#_9b744c1b8c48467b5cc806498ef0413a | p5@INS-IGF2 |
| 1.0e-22 | FFCP PHASE1:Hg19::chr11:2179591..2179596,-#_9b744c1b8c48467b5cc806498ef0413a | p5@INS-IGF2 |
| 2.72e-21 | FFCP PHASE2:Hg19::chr17:75446704..75446713,+#_f71225512411f9f73e0f456e3efb3a8c | p35@SEPT9 |
| 2.72e-21 | FFCP PHASE1:Hg19::chr17:75446704..75446713,+#_f71225512411f9f73e0f456e3efb3a8c | p35@SEPT9 |
