CL:0000082: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=epithelial cell of lung | |name=epithelial cell of lung | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002048;;UBERON:0000115;;UBERON:0002048 | |part_of=UBERON:0002048;;UBERON:0000115;;UBERON:0002048 | ||
Latest revision as of 16:29, 12 September 2014
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000066(epithelial cell) |
|---|---|
| part_of: | UBERON:0002048(lung),UBERON:0000115(lung epithelium),UBERON:0002048(lung) |
Children
| is a: | CL:0010003 (epithelial cell of alveolus of lung) |
|---|---|
| derives from: | FF:0100762 (lung cancer cell line sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
- 10457-106G7 (squamous cell lung carcinoma cell line:LC-1F)
- 10462-106H3
- 10468-106H9
- 10472-106I4
- 10486-107A9 (squamous cell lung carcinoma cell line:EBC-1)
- 10499-107C4 (lung adenocarcinoma cell line:A549)
- 10500-107C5
- 10501-107C6 (squamous cell lung carcinoma cell line:RERF-LC-AI)
- 10502-107C7
... further results Mouse (Mus musculus)
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
- 10457-106G7 (squamous cell lung carcinoma cell line:LC-1F)
- 10462-106H3
- 10468-106H9
- 10472-106I4
- 10486-107A9 (squamous cell lung carcinoma cell line:EBC-1)
- 10499-107C4 (lung adenocarcinoma cell line:A549)
- 10500-107C5
- 10501-107C6 (squamous cell lung carcinoma cell line:RERF-LC-AI)
- 10502-107C7
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000082 (epithelial cell of lung), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.46e-24 | FFCP PHASE1:Hg19::chr2:233352573..233352580,-#_2eb73a20164db7dedc1cdab9b0ee8bfb | p4@ECEL1 |
| 3.46e-24 | FFCP PHASE2:Hg19::chr2:233352573..233352580,-#_2eb73a20164db7dedc1cdab9b0ee8bfb | p4@ECEL1 |
| 5.37e-22 | FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_94164513bc202a85df27a68fefb6dd65 | p@chr6:45399245..45399258, + |
| 5.37e-22 | FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_94164513bc202a85df27a68fefb6dd65 | p@chr6:45399533..45399540, + |
| 5.37e-22 | FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_94164513bc202a85df27a68fefb6dd65 | p@chr6:45399533..45399540, + |
| 5.37e-22 | FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_94164513bc202a85df27a68fefb6dd65 | p@chr6:45399263..45399274, + |
| 5.37e-22 | FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_94164513bc202a85df27a68fefb6dd65 | p@chr6:45399263..45399274, + |
| 5.37e-22 | FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_94164513bc202a85df27a68fefb6dd65 | p@chr6:45399294..45399301, + |
| 5.37e-22 | FFCP PHASE1:Hg19::chr7:31938679..31938703,-#_94164513bc202a85df27a68fefb6dd65 | p@chr7:31938679..31938703, - |
| 5.37e-22 | FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_94164513bc202a85df27a68fefb6dd65 | p@chr6:45399294..45399301, + |
| 5.37e-22 | FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_94164513bc202a85df27a68fefb6dd65 | p@chr6:45405332..45405343, + |
| 5.37e-22 | FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_94164513bc202a85df27a68fefb6dd65 | p@chr6:45405332..45405343, + |
| 5.37e-22 | FFCP PHASE1:Hg19::chr6:125378873..125378876,+#_94164513bc202a85df27a68fefb6dd65 | p@chr6:125378873..125378876, + |
| 5.37e-22 | FFCP PHASE2:Hg19::chr7:31938679..31938703,-#_94164513bc202a85df27a68fefb6dd65 | p@chr7:31938679..31938703, - |
| 5.37e-22 | FFCP PHASE2:Hg19::chr7:157944243..157944249,-#_94164513bc202a85df27a68fefb6dd65 | p@chr7:157944243..157944249, - |
| 5.37e-22 | FFCP PHASE1:Hg19::chr7:157944243..157944249,-#_94164513bc202a85df27a68fefb6dd65 | p@chr7:157944243..157944249, - |
| 5.37e-22 | FFCP PHASE2:Hg19::chr6:125378873..125378876,+#_94164513bc202a85df27a68fefb6dd65 | p@chr6:125378873..125378876, + |
| 5.37e-22 | FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_94164513bc202a85df27a68fefb6dd65 | p@chr6:45405393..45405412, + |
| 5.37e-22 | FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_94164513bc202a85df27a68fefb6dd65 | p@chr6:45399245..45399258, + |
| 5.37e-22 | FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_94164513bc202a85df27a68fefb6dd65 | p@chr6:45405393..45405412, + |
| 1.58e-19 | FFCP PHASE2:Hg19::chr6:73785930..73785949,-#_a0a37a357b0c5245cbf514ee37511366 | p@chr6:73785930..73785949, - |
| 1.58e-19 | FFCP PHASE1:Hg19::chr6:73785930..73785949,-#_a0a37a357b0c5245cbf514ee37511366 | p@chr6:73785930..73785949, - |
| 1.68e-19 | FFCP PHASE2:Hg19::chr10:5057199..5057247,-#_213dc9c22d68b090d6a450bbb210448b | p@chr10:5057199..5057247, - |
| 1.68e-19 | FFCP PHASE1:Hg19::chr10:5057199..5057247,-#_213dc9c22d68b090d6a450bbb210448b | p@chr10:5057199..5057247, - |
| 6.08e-19 | FFCP PHASE1:Hg19::chr1:161085273..161085285,+#_87688c7374cfc8feb264ad94aa924eeb | p@chr1:161085273..161085285, + |
| 6.08e-19 | FFCP PHASE2:Hg19::chr1:161085273..161085285,+#_87688c7374cfc8feb264ad94aa924eeb | p@chr1:161085273..161085285, + |
| 5.04e-17 | FFCP PHASE2:Hg19::chr14:36990061..36990072,-#_cc8bfb34212af6924d4e0dbf3620be02 | p11@NKX2-1 |
| 5.04e-17 | FFCP PHASE1:Hg19::chr14:36990061..36990072,-#_cc8bfb34212af6924d4e0dbf3620be02 | p11@NKX2-1 |
| 1.43e-16 | FFCP PHASE1:Hg19::chr8:63077406..63077421,-#_b75b9ee3f6a27603d84d4556200029bb | p@chr8:63077406..63077421, - |
| 1.43e-16 | FFCP PHASE2:Hg19::chr8:63077406..63077421,-#_b75b9ee3f6a27603d84d4556200029bb | p@chr8:63077406..63077421, - |
| 1.75e-16 | FFCP PHASE2:Hg19::chr14:36989407..36989410,-#_cc24d02359f5c97239b467d67878e3f9 | p15@NKX2-1 |
| 1.75e-16 | FFCP PHASE1:Hg19::chr14:36989407..36989410,-#_cc24d02359f5c97239b467d67878e3f9 | p15@NKX2-1 |
| 2.52e-16 | FFCP PHASE1:Hg19::chr2:194367545..194367554,+#_4585e5d7c15ce1d5e483b155d9db3a1f | p@chr2:194367545..194367554, + |
| 2.52e-16 | FFCP PHASE2:Hg19::chr2:194367545..194367554,+#_4585e5d7c15ce1d5e483b155d9db3a1f | p@chr2:194367545..194367554, + |
| 1.19e-15 | FFCP PHASE1:Hg19::chr14:36989412..36989423,-#_095c5047b16fef062d39cdf9feb02290 | p12@NKX2-1 |
| 1.19e-15 | FFCP PHASE2:Hg19::chr14:36989412..36989423,-#_095c5047b16fef062d39cdf9feb02290 | p12@NKX2-1 |
| 4.02e-15 | FFCP PHASE2:Hg19::chr20:22565370..22565388,-#_eabdc52ccae3eb47f82fccf3d9974155 | p2@FOXA2 |
| 4.02e-15 | FFCP PHASE1:Hg19::chr20:22565370..22565388,-#_eabdc52ccae3eb47f82fccf3d9974155 | p2@FOXA2 |
| 4.91e-15 | FFCP PHASE2:Hg19::chr4:3344434..3344441,+#_2cdefe9a614e08d81b019c3027df1542 | p@chr4:3344434..3344441, + |
| 4.91e-15 | FFCP PHASE1:Hg19::chr13:70823810..70823813,+#_2cdefe9a614e08d81b019c3027df1542 | p@chr13:70823810..70823813, + |
| 4.91e-15 | FFCP PHASE1:Hg19::chr12:57638896..57638928,-#_2cdefe9a614e08d81b019c3027df1542 | p@chr12:57638896..57638928, - |
| 4.91e-15 | FFCP PHASE2:Hg19::chr13:70823810..70823813,+#_2cdefe9a614e08d81b019c3027df1542 | p@chr13:70823810..70823813, + |
| 4.91e-15 | FFCP PHASE2:Hg19::chr7:1968190..1968198,-#_2cdefe9a614e08d81b019c3027df1542 | p@chr7:1968190..1968198, - |
| 4.91e-15 | FFCP PHASE1:Hg19::chr7:1968190..1968198,-#_2cdefe9a614e08d81b019c3027df1542 | p@chr7:1968190..1968198, - |
| 4.91e-15 | FFCP PHASE1:Hg19::chr11:69518108..69518118,-#_2cdefe9a614e08d81b019c3027df1542 | p@chr11:69518108..69518118, - |
| 4.91e-15 | FFCP PHASE2:Hg19::chr12:57638896..57638928,-#_2cdefe9a614e08d81b019c3027df1542 | p@chr12:57638896..57638928, - |
| 4.91e-15 | FFCP PHASE1:Hg19::chr8:40525350..40525354,-#_2cdefe9a614e08d81b019c3027df1542 | p@chr8:40525350..40525354, - |
| 4.91e-15 | FFCP PHASE2:Hg19::chr6:45399724..45399733,+#_2cdefe9a614e08d81b019c3027df1542 | p@chr6:45399724..45399733, + |
| 4.91e-15 | FFCP PHASE1:Hg19::chr6:45399724..45399733,+#_2cdefe9a614e08d81b019c3027df1542 | p@chr6:45399724..45399733, + |
| 4.91e-15 | FFCP PHASE1:Hg19::chr5:92526866..92526914,-#_2cdefe9a614e08d81b019c3027df1542 | p@chr5:92526866..92526914, - |
| 4.91e-15 | FFCP PHASE2:Hg19::chr8:40525350..40525354,-#_2cdefe9a614e08d81b019c3027df1542 | p@chr8:40525350..40525354, - |
| 4.91e-15 | FFCP PHASE2:Hg19::chr7:1968200..1968208,-#_2cdefe9a614e08d81b019c3027df1542 | p@chr7:1968200..1968208, - |
| 4.91e-15 | FFCP PHASE2:Hg19::chr11:69518108..69518118,-#_2cdefe9a614e08d81b019c3027df1542 | p@chr11:69518108..69518118, - |
| 4.91e-15 | FFCP PHASE1:Hg19::chr7:1968200..1968208,-#_2cdefe9a614e08d81b019c3027df1542 | p@chr7:1968200..1968208, - |
| 4.91e-15 | FFCP PHASE1:Hg19::chr11:69518332..69518343,-#_2cdefe9a614e08d81b019c3027df1542 | p@chr11:69518332..69518343, - |
| 4.91e-15 | FFCP PHASE2:Hg19::chr6:73786593..73786601,+#_2cdefe9a614e08d81b019c3027df1542 | p@chr6:73786593..73786601, + |
| 4.91e-15 | FFCP PHASE2:Hg19::chr5:92526866..92526914,-#_2cdefe9a614e08d81b019c3027df1542 | p@chr5:92526866..92526914, - |
| 4.91e-15 | FFCP PHASE1:Hg19::chr6:73786593..73786601,+#_2cdefe9a614e08d81b019c3027df1542 | p@chr6:73786593..73786601, + |
| 4.91e-15 | FFCP PHASE2:Hg19::chr11:69518332..69518343,-#_2cdefe9a614e08d81b019c3027df1542 | p@chr11:69518332..69518343, - |
| 4.91e-15 | FFCP PHASE2:Hg19::chr6:45399422..45399430,+#_2cdefe9a614e08d81b019c3027df1542 | p@chr6:45399422..45399430, + |
| 4.91e-15 | FFCP PHASE1:Hg19::chr6:45399422..45399430,+#_2cdefe9a614e08d81b019c3027df1542 | p@chr6:45399422..45399430, + |
| 4.91e-15 | FFCP PHASE2:Hg19::chr6:73786620..73786627,+#_2cdefe9a614e08d81b019c3027df1542 | p@chr6:73786620..73786627, + |
| 4.91e-15 | FFCP PHASE1:Hg19::chr4:3344434..3344441,+#_2cdefe9a614e08d81b019c3027df1542 | p@chr4:3344434..3344441, + |
| 4.91e-15 | FFCP PHASE1:Hg19::chr6:73786620..73786627,+#_2cdefe9a614e08d81b019c3027df1542 | p@chr6:73786620..73786627, + |
| 5.27e-15 | FFCP PHASE2:Hg19::chr19:6828544..6828554,+#_84b828af05bdae2568674a02aed68859 | p@chr19:6828544..6828554, + |
| 5.27e-15 | FFCP PHASE1:Hg19::chr4:3310694..3310716,-#_84b828af05bdae2568674a02aed68859 | p@chr4:3310694..3310716, - |
| 5.27e-15 | FFCP PHASE2:Hg19::chr16:19396252..19396261,+#_84b828af05bdae2568674a02aed68859 | p@chr16:19396252..19396261, + |
| 5.27e-15 | FFCP PHASE2:Hg19::chr4:3310694..3310716,-#_84b828af05bdae2568674a02aed68859 | p@chr4:3310694..3310716, - |
| 5.27e-15 | FFCP PHASE1:Hg19::chr7:44574294..44574303,-#_84b828af05bdae2568674a02aed68859 | p@chr7:44574294..44574303, - |
| 5.27e-15 | FFCP PHASE1:Hg19::chr12:53686428..53686432,+#_84b828af05bdae2568674a02aed68859 | p@chr12:53686428..53686432, + |
| 5.27e-15 | FFCP PHASE2:Hg19::chr7:44574294..44574303,-#_84b828af05bdae2568674a02aed68859 | p@chr7:44574294..44574303, - |
| 5.27e-15 | FFCP PHASE1:Hg19::chr18:10085554..10085562,+#_84b828af05bdae2568674a02aed68859 | p@chr18:10085554..10085562, + |
| 5.27e-15 | FFCP PHASE1:Hg19::chr5:77683792..77683799,+#_84b828af05bdae2568674a02aed68859 | p@chr5:77683792..77683799, + |
| 5.27e-15 | FFCP PHASE1:Hg19::chr16:19396252..19396261,+#_84b828af05bdae2568674a02aed68859 | p@chr16:19396252..19396261, + |
| 5.27e-15 | FFCP PHASE2:Hg19::chr12:53686428..53686432,+#_84b828af05bdae2568674a02aed68859 | p@chr12:53686428..53686432, + |
| 5.27e-15 | FFCP PHASE2:Hg19::chr5:77683792..77683799,+#_84b828af05bdae2568674a02aed68859 | p@chr5:77683792..77683799, + |
| 5.27e-15 | FFCP PHASE2:Hg19::chr18:10085554..10085562,+#_84b828af05bdae2568674a02aed68859 | p@chr18:10085554..10085562, + |
| 5.27e-15 | FFCP PHASE1:Hg19::chr19:6828544..6828554,+#_84b828af05bdae2568674a02aed68859 | p@chr19:6828544..6828554, + |
| 5.66e-15 | FFCP PHASE2:Hg19::chr18:71843121..71843138,+#_abb0bab07843143c7ca62ea56694b73e | p@chr18:71843121..71843138, + |
| 5.66e-15 | FFCP PHASE1:Hg19::chr18:71843159..71843180,+#_abb0bab07843143c7ca62ea56694b73e | p@chr18:71843159..71843180, + |
| 5.66e-15 | FFCP PHASE2:Hg19::chr18:71843159..71843180,+#_abb0bab07843143c7ca62ea56694b73e | p@chr18:71843159..71843180, + |
| 5.66e-15 | FFCP PHASE1:Hg19::chr18:72611750..72611755,+#_abb0bab07843143c7ca62ea56694b73e | p@chr18:72611750..72611755, + |
| 5.66e-15 | FFCP PHASE1:Hg19::chr6:18208425..18208436,+#_abb0bab07843143c7ca62ea56694b73e | p@chr6:18208425..18208436, + |
| 5.66e-15 | FFCP PHASE2:Hg19::chr18:72611750..72611755,+#_abb0bab07843143c7ca62ea56694b73e | p@chr18:72611750..72611755, + |
| 5.66e-15 | FFCP PHASE2:Hg19::chr6:18208425..18208436,+#_abb0bab07843143c7ca62ea56694b73e | p@chr6:18208425..18208436, + |
| 5.66e-15 | FFCP PHASE1:Hg19::chr2:233352641..233352675,+#_abb0bab07843143c7ca62ea56694b73e | p@chr2:233352641..233352675, + |
| 5.66e-15 | FFCP PHASE2:Hg19::chr2:233352641..233352675,+#_abb0bab07843143c7ca62ea56694b73e | p@chr2:233352641..233352675, + |
| 5.66e-15 | FFCP PHASE1:Hg19::chr1:156779602..156779619,-#_abb0bab07843143c7ca62ea56694b73e | p@chr1:156779602..156779619, - |
| 5.66e-15 | FFCP PHASE1:Hg19::chr18:71843121..71843138,+#_abb0bab07843143c7ca62ea56694b73e | p@chr18:71843121..71843138, + |
| 5.66e-15 | FFCP PHASE2:Hg19::chr1:156779602..156779619,-#_abb0bab07843143c7ca62ea56694b73e | p@chr1:156779602..156779619, - |
| 5.96e-15 | FFCP PHASE1:Hg19::chr14:36982724..36982767,-#_b00fe5a8d91ad4704c30351da7e1243f | p1@SFTA3 |
| 5.96e-15 | FFCP PHASE2:Hg19::chr14:36982724..36982767,-#_b00fe5a8d91ad4704c30351da7e1243f | p1@SFTA3 |
| 2.37e-14 | FFCP PHASE1:Hg19::chr11:123325116..123325128,+#_c51aa76ba0c94295734e9fd282a71421 | p4@ENST00000525757, p4@uc001pyv.1 |
| 2.37e-14 | FFCP PHASE2:Hg19::chr11:123325116..123325128,+#_c51aa76ba0c94295734e9fd282a71421 | p4@ENST00000525757, p4@uc001pyv.1 |
| 2.81e-14 | FFCP PHASE2:Hg19::chrY:59027988..59028000,+#_8e1968ef7f9191a3bc4b018279d87cd0 | p@chrY:59027988..59028000, + |
| 2.81e-14 | FFCP PHASE1:Hg19::chrY:59027988..59028000,+#_8e1968ef7f9191a3bc4b018279d87cd0 | p@chrY:59027988..59028000, + |
| 3.31e-14 | FFCP PHASE2:Hg19::chr14:36982935..36982943,-#_552cf2e3a95f54262ea528eb298d2099 | p9@SFTA3 |
| 3.31e-14 | FFCP PHASE1:Hg19::chr11:17555398..17555410,-#_552cf2e3a95f54262ea528eb298d2099 | p9@USH1C |
| 3.31e-14 | FFCP PHASE2:Hg19::chr11:17555398..17555410,-#_552cf2e3a95f54262ea528eb298d2099 | p9@USH1C |
| 3.31e-14 | FFCP PHASE1:Hg19::chr14:36982935..36982943,-#_552cf2e3a95f54262ea528eb298d2099 | p9@SFTA3 |
