Personal tools

UBERON:0004536: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0004536
|alt_id=
|name=lymph vasculature
|namespace=
|def="A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. Lymphatic vessels are usually classified as either superficial or deep." [ZFA:0005105]
|xref=FMA:63815;;TAO:0005105;;ZFA:0005105
|is_a=UBERON:0002049
|synonym="lymphatic trunks and ducts" EXACT [FMA:63815];;"lymphatic vasculature" EXACT [];;"lymphatic vessel network" EXACT [];;"lymphatic vessels set" EXACT [FMA:63815];;"set of lymphatic vessels" EXACT [];;"trunci et ductus lymphatici" EXACT [FMA:63815, FMA:TA]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. Lymphatic vessels are usually classified as either superficial or deep." [ZFA:0005105]
|subset=vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004536
|is_a=UBERON:0002049
|is_obsolete=
|located_in=
|located_in=
|name=lymph vasculature
|namespace=
|obo_creation_date=
|part_of=UBERON:0002465
|part_of=UBERON:0002465
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=vertebrate_core
|preceded_by=
|synonym="lymphatic trunks and ducts" EXACT [FMA:63815];;"lymphatic vasculature" EXACT [];;"lymphatic vessel network" EXACT [];;"lymphatic vessels set" EXACT [FMA:63815];;"set of lymphatic vessels" EXACT [];;"trunci et ductus lymphatici" EXACT [FMA:63815, FMA:TA]
|union_of=
|xref=FMA:63815;;TAO:0005105;;ZFA:0005105
}}
}}

Revision as of 11:30, 12 September 2014

Name:lymph vasculature
Definition:"A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. Lymphatic vessels are usually classified as either superficial or deep." [ZFA:0005105]
Xrefs:
links:

FMA:63815
TAO:0005105

ZFA:0005105
Synonyms: "lymphatic trunks and ducts" EXACT [FMA:63815]
"lymphatic vasculature" EXACT []
"lymphatic vessel network" EXACT []
"lymphatic vessels set" EXACT [FMA:63815]
"set of lymphatic vessels" EXACT []
"trunci et ductus lymphatici" EXACT [FMA:63815, FMA:TA]
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002049(vasculature)
part_of:UBERON:0002465(lymphoid system)



Children

part of:UBERON:0001473 (lymphatic vessel)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004536 (lymph vasculature), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.05e-102FFCP PHASE1:Hg19::chr9:13432964..13432971,-#_7692df7a2b1b74c9cd002ffc47fd60f2p@chr9:13432964..13432971, -
5.05e-102FFCP PHASE2:Hg19::chr9:13432964..13432971,-#_7692df7a2b1b74c9cd002ffc47fd60f2p@chr9:13432964..13432971, -
4.74e-79FFCP PHASE1:Hg19::chr1:65344872..65344880,-#_3c1527a031b8361675bea51a1850b594p15@JAK1
4.74e-79FFCP PHASE2:Hg19::chr1:65344872..65344880,-#_3c1527a031b8361675bea51a1850b594p15@JAK1
1.08e-76FFCP PHASE1:Hg19::chr3:30560368..30560379,+#_5572ab3e945b54d5ce64e415b76b89fdp@chr3:30560368..30560379, +
1.08e-76FFCP PHASE2:Hg19::chr3:30560368..30560379,+#_5572ab3e945b54d5ce64e415b76b89fdp@chr3:30560368..30560379, +
6.73e-74FFCP PHASE2:Hg19::chr17:28534912..28534942,-#_18b83cea9f8bf3368a5a10b2b7d55b06p@chr17:28534912..28534942, -
6.73e-74FFCP PHASE1:Hg19::chr17:28534912..28534942,-#_18b83cea9f8bf3368a5a10b2b7d55b06p@chr17:28534912..28534942, -
2.1e-68FFCP PHASE1:Hg19::chr2:56149881..56149899,-#_78ad7225edffa9dcde1eaabe15b0f377p14@EFEMP1
2.1e-68FFCP PHASE2:Hg19::chr2:56149881..56149899,-#_78ad7225edffa9dcde1eaabe15b0f377p14@EFEMP1
1.18e-65FFCP PHASE1:Hg19::chr19:48613876..48613886,-#_b0cbb1deb007f46575d0e5420fd6bc57p7@PLA2G4C
1.18e-65FFCP PHASE2:Hg19::chr19:48613876..48613886,-#_b0cbb1deb007f46575d0e5420fd6bc57p7@PLA2G4C
3.64e-64FFCP PHASE1:Hg19::chr6:74848034..74848043,+#_a093eb72400f554c02aecf623d2c022fp@chr6:74848034..74848043, +
3.64e-64FFCP PHASE2:Hg19::chr6:74848034..74848043,+#_a093eb72400f554c02aecf623d2c022fp@chr6:74848034..74848043, +
6.87e-57FFCP PHASE1:Hg19::chr6:5054373..5054392,-#_b0c20693481c8d12283f89e55dca3127p1@AK126470
6.87e-57FFCP PHASE2:Hg19::chr6:5054373..5054392,-#_b0c20693481c8d12283f89e55dca3127p1@AK126470
9.15e-57FFCP PHASE1:Hg19::chr7:79998842..79998855,+#_157949554de2976b011e39421013bcadp25@CD36
9.15e-57FFCP PHASE2:Hg19::chr7:79998842..79998855,+#_157949554de2976b011e39421013bcadp25@CD36
1.06e-56FFCP PHASE1:Hg19::chr3:145968441..145968451,-#_34160d7d3108dbe429cb7163382d55fbp17@PLSCR4
1.06e-56FFCP PHASE2:Hg19::chr3:145968441..145968451,-#_34160d7d3108dbe429cb7163382d55fbp17@PLSCR4
1.22e-56FFCP PHASE1:Hg19::chr2:33661536..33661549,+#_83784b6ea1464a695ad60dd41b082f4bp17@RASGRP3
1.22e-56FFCP PHASE2:Hg19::chr2:33661536..33661549,+#_83784b6ea1464a695ad60dd41b082f4bp17@RASGRP3
1.41e-56FFCP PHASE1:Hg19::chr9:13446440..13446456,+#_2df8a28bedfa78be0700991c1d81a225p2@ENST00000428006
1.41e-56FFCP PHASE2:Hg19::chr9:13446440..13446456,+#_2df8a28bedfa78be0700991c1d81a225p2@ENST00000428006
4.57e-56FFCP PHASE1:Hg19::chr12:46807404..46807413,+#_89be3d0ace8e87168a44bc609da33743p@chr12:46807404..46807413, +
4.57e-56FFCP PHASE2:Hg19::chr17:28534879..28534889,-#_89be3d0ace8e87168a44bc609da33743p@chr17:28534879..28534889, -
4.57e-56FFCP PHASE2:Hg19::chr12:46807404..46807413,+#_89be3d0ace8e87168a44bc609da33743p@chr12:46807404..46807413, +
4.57e-56FFCP PHASE1:Hg19::chr17:28534879..28534889,-#_89be3d0ace8e87168a44bc609da33743p@chr17:28534879..28534889, -
6.66e-56FFCP PHASE1:Hg19::chr7:79998905..79998917,+#_da82e7a615192c217d8dac2a5e88f66bp26@CD36
6.66e-56FFCP PHASE2:Hg19::chr7:79998905..79998917,+#_da82e7a615192c217d8dac2a5e88f66bp26@CD36
2.32e-54FFCP PHASE2:Hg19::chr8:30300216..30300245,+#_3673059bdf1e330a7e5c0e8056edbb07p10@RBPMS
2.32e-54FFCP PHASE1:Hg19::chr8:30300216..30300245,+#_3673059bdf1e330a7e5c0e8056edbb07p10@RBPMS
3.99e-50FFCP PHASE2:Hg19::chr4:114238344..114238353,+#_6ea3758d7ed69c35c70a63deb22400a3p58@ANK2
3.99e-50FFCP PHASE1:Hg19::chr4:114238344..114238353,+#_6ea3758d7ed69c35c70a63deb22400a3p58@ANK2
3.99e-50FFCP PHASE1:Hg19::chr11:108794408..108794422,+#_6ea3758d7ed69c35c70a63deb22400a3p@chr11:108794408..108794422, +
3.99e-50FFCP PHASE1:Hg19::chr1:66723029..66723041,+#_6ea3758d7ed69c35c70a63deb22400a3p54@PDE4B
3.99e-50FFCP PHASE2:Hg19::chr1:66723029..66723041,+#_6ea3758d7ed69c35c70a63deb22400a3p54@PDE4B
3.99e-50FFCP PHASE1:Hg19::chr2:33661526..33661535,+#_6ea3758d7ed69c35c70a63deb22400a3p23@RASGRP3
3.99e-50FFCP PHASE2:Hg19::chr2:33661526..33661535,+#_6ea3758d7ed69c35c70a63deb22400a3p23@RASGRP3
3.99e-50FFCP PHASE1:Hg19::chr11:108794429..108794441,+#_6ea3758d7ed69c35c70a63deb22400a3p@chr11:108794429..108794441, +
3.99e-50FFCP PHASE2:Hg19::chr11:108794408..108794422,+#_6ea3758d7ed69c35c70a63deb22400a3p@chr11:108794408..108794422, +
3.99e-50FFCP PHASE2:Hg19::chr11:108794429..108794441,+#_6ea3758d7ed69c35c70a63deb22400a3p@chr11:108794429..108794441, +
3.99e-50FFCP PHASE1:Hg19::chr17:75873825..75873826,+#_6ea3758d7ed69c35c70a63deb22400a3p@chr17:75873825..75873826, +
3.99e-50FFCP PHASE2:Hg19::chr17:75873825..75873826,+#_6ea3758d7ed69c35c70a63deb22400a3p@chr17:75873825..75873826, +
9.58e-48FFCP PHASE1:Hg19::chr4:189881560..189881604,-#_f7e7251295406c639301573fc9c54d67p@chr4:189881560..189881604, -
9.58e-48FFCP PHASE2:Hg19::chr4:189881560..189881604,-#_f7e7251295406c639301573fc9c54d67p@chr4:189881560..189881604, -
1.55e-47FFCP PHASE1:Hg19::chr4:90857427..90857438,+#_a1d97d0be108b7158c51784ca8f7913dp@chr4:90857427..90857438, +
1.55e-47FFCP PHASE2:Hg19::chr4:90857427..90857438,+#_a1d97d0be108b7158c51784ca8f7913dp@chr4:90857427..90857438, +
1.71e-47FFCP PHASE1:Hg19::chr10:4823152..4823165,-#_a56ba58c4aacbd3c540add197a45d03ap@chr10:4823152..4823165, -
1.71e-47FFCP PHASE2:Hg19::chr10:4823152..4823165,-#_a56ba58c4aacbd3c540add197a45d03ap@chr10:4823152..4823165, -
3.05e-47FFCP PHASE1:Hg19::chr6:49534004..49534016,+#_1f29b0a9ee91582f5c3373bc7eb56ac8p@chr6:49534004..49534016, +
3.05e-47FFCP PHASE2:Hg19::chr6:49534004..49534016,+#_1f29b0a9ee91582f5c3373bc7eb56ac8p@chr6:49534004..49534016, +
7.08e-47FFCP PHASE1:Hg19::chr12:96841308..96841312,+#_1263577bac1d22327bb3890beb7161dep@chr12:96841308..96841312, +
7.08e-47FFCP PHASE2:Hg19::chr12:96841308..96841312,+#_1263577bac1d22327bb3890beb7161dep@chr12:96841308..96841312, +
3.73e-45FFCP PHASE1:Hg19::chr1:43917566..43917577,-#_5664f186480fa8661aed98a5beb505f4p6@HYI
3.73e-45FFCP PHASE2:Hg19::chr1:43917566..43917577,-#_5664f186480fa8661aed98a5beb505f4p6@HYI
4.34e-45FFCP PHASE1:Hg19::chr3:34262215..34262222,+#_0c16c45d68198428983e62dc29d3f317p@chr3:34262215..34262222, +
4.34e-45FFCP PHASE2:Hg19::chr3:34262215..34262222,+#_0c16c45d68198428983e62dc29d3f317p@chr3:34262215..34262222, +
5.04e-45FFCP PHASE1:Hg19::chr18:54339814..54339822,+#_3b7d658503ae88c295c8cdce8002eb65p7@WDR7
5.04e-45FFCP PHASE2:Hg19::chr18:54339814..54339822,+#_3b7d658503ae88c295c8cdce8002eb65p7@WDR7
6.81e-45FFCP PHASE1:Hg19::chr7:10196589..10196595,-#_3dad64e8512018cfc355107866a66be3p@chr7:10196589..10196595, -
6.81e-45FFCP PHASE2:Hg19::chr7:10196589..10196595,-#_3dad64e8512018cfc355107866a66be3p@chr7:10196589..10196595, -
7.92e-45FFCP PHASE1:Hg19::chr2:62705562..62705579,+#_81d3f821c0d230f258c74babee14151cp@chr2:62705562..62705579, +
7.92e-45FFCP PHASE2:Hg19::chr2:62705562..62705579,+#_81d3f821c0d230f258c74babee14151cp@chr2:62705562..62705579, +
3.69e-44FFCP PHASE1:Hg19::chr4:90856951..90856962,+#_9d6853c5a5bb7152fe9186b17da6cbbfp@chr4:90856951..90856962, +
3.69e-44FFCP PHASE2:Hg19::chr4:90856951..90856962,+#_9d6853c5a5bb7152fe9186b17da6cbbfp@chr4:90856951..90856962, +
3.69e-44FFCP PHASE1:Hg19::chr12:71031281..71031292,-#_9d6853c5a5bb7152fe9186b17da6cbbfp12@PTPRB
3.69e-44FFCP PHASE2:Hg19::chr12:71031281..71031292,-#_9d6853c5a5bb7152fe9186b17da6cbbfp12@PTPRB
3.18e-40FFCP PHASE1:Hg19::chr12:105882068..105882076,+#_360c7932324edd50696b542972c9e6f8p@chr12:105882068..105882076, +
3.18e-40FFCP PHASE2:Hg19::chr12:105882068..105882076,+#_360c7932324edd50696b542972c9e6f8p@chr12:105882068..105882076, +
3.89e-40FFCP PHASE1:Hg19::chr8:6459787..6459796,+#_efe65bdedc5b6303b5eaff7e781cb0f8p@chr8:6459787..6459796, +
3.89e-40FFCP PHASE2:Hg19::chr8:6459787..6459796,+#_efe65bdedc5b6303b5eaff7e781cb0f8p@chr8:6459787..6459796, +
1.55e-39FFCP PHASE1:Hg19::chr4:38057595..38057624,-#_6a61cee4850ddfaf113dd1960620a2f4p@chr4:38057595..38057624, -
1.55e-39FFCP PHASE2:Hg19::chr4:38057595..38057624,-#_6a61cee4850ddfaf113dd1960620a2f4p@chr4:38057595..38057624, -
6.2e-39FFCP PHASE1:Hg19::chr3:194868639..194868654,+#_80087c27c49e65e97fe7ac7f16c05be3p1@ENST00000426468
6.2e-39FFCP PHASE2:Hg19::chr3:194868639..194868654,+#_80087c27c49e65e97fe7ac7f16c05be3p1@ENST00000426468
9.18e-38FFCP PHASE2:Hg19::chr8:16425014..16425019,-#_1b36d3035ef1e16003801481c6952c11p13@MSR1
9.18e-38FFCP PHASE1:Hg19::chr8:16425014..16425019,-#_1b36d3035ef1e16003801481c6952c11p13@MSR1
1.51e-37FFCP PHASE1:Hg19::chr6:168195978..168195989,+#_dd93b93daf4898d5bb078cf837e6952ep3@LOC441179
1.51e-37FFCP PHASE2:Hg19::chr6:168195978..168195989,+#_dd93b93daf4898d5bb078cf837e6952ep3@LOC441179
1.95e-37FFCP PHASE1:Hg19::chr2:27487913..27487933,-#_3c232d88b1ba0d1bfeb2dc9bd7db7bd6p@chr2:27487913..27487933, -
1.95e-37FFCP PHASE2:Hg19::chr2:27487913..27487933,-#_3c232d88b1ba0d1bfeb2dc9bd7db7bd6p@chr2:27487913..27487933, -
5.85e-37FFCP PHASE1:Hg19::chr8:6420777..6420779,-#_1a9067c809e422232cb9807ff0934b76p5@ANGPT2
5.85e-37FFCP PHASE2:Hg19::chr8:6420777..6420779,-#_1a9067c809e422232cb9807ff0934b76p5@ANGPT2
1.23e-36FFCP PHASE1:Hg19::chr6:168195926..168195943,+#_16b5e16e3868b5bd29dd847a04fe7ad4p1@LOC441179
1.23e-36FFCP PHASE2:Hg19::chr6:168195926..168195943,+#_16b5e16e3868b5bd29dd847a04fe7ad4p1@LOC441179
1.33e-36FFCP PHASE2:Hg19::chr10:94590895..94590905,+#_a53138f965f7a989e07c54f872d17564p8@EXOC6
1.33e-36FFCP PHASE1:Hg19::chr10:94590895..94590905,+#_a53138f965f7a989e07c54f872d17564p8@EXOC6
5.59e-36FFCP PHASE2:Hg19::chr8:16425043..16425061,-#_a7bdb902e77ad6d64b8d40d48daba7aep5@MSR1
5.59e-36FFCP PHASE1:Hg19::chr8:16425043..16425061,-#_a7bdb902e77ad6d64b8d40d48daba7aep5@MSR1
1.86e-34FFCP PHASE1:Hg19::chr17:79426425..79426444,+#_9a8d4568fc4a9a8b6d7937e868315c9fp@chr17:79426425..79426444, +
1.86e-34FFCP PHASE2:Hg19::chr17:79426425..79426444,+#_9a8d4568fc4a9a8b6d7937e868315c9fp@chr17:79426425..79426444, +
3.14e-34FFCP PHASE1:Hg19::chr11:57543275..57543296,+#_2ec3f9d97f49125ff2dcde4110517a08p@chr11:57543275..57543296, +
3.14e-34FFCP PHASE2:Hg19::chr11:57543275..57543296,+#_2ec3f9d97f49125ff2dcde4110517a08p@chr11:57543275..57543296, +
2.31e-33FFCP PHASE1:Hg19::chr19:45226133..45226157,-#_14b4e887395f1e7c8e7253f1eefd074ap@chr19:45226133..45226157, -
2.31e-33FFCP PHASE2:Hg19::chr19:45226133..45226157,-#_14b4e887395f1e7c8e7253f1eefd074ap@chr19:45226133..45226157, -
2.61e-33FFCP PHASE1:Hg19::chr3:159570877..159570888,+#_f0e5e46a80bd4c5212d5583cf3017544p43@SCHIP1
2.61e-33FFCP PHASE2:Hg19::chr3:159570877..159570888,+#_f0e5e46a80bd4c5212d5583cf3017544p43@SCHIP1
7.63e-33FFCP PHASE1:Hg19::chr12:71031220..71031229,-#_c09119739bba43f21bd52ca259003eafp10@PTPRB
7.63e-33FFCP PHASE2:Hg19::chr12:71031220..71031229,-#_c09119739bba43f21bd52ca259003eafp10@PTPRB

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0004536&oldid=3274342"