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{{UBERON
{{UBERON
|id=UBERON:0000059
|alt_id=
|name=large intestine
|namespace=
|def="The large intestine consists of the cecum and colon[WP]. Organ with organ cavity which is continuous proximally with the small intestine and distally with the anal canal.[FMA]." [FMA:7201, Wikipedia:Large_intestine_(anatomy)]
|xref=AAO:0010396;;BTO:0000706;;EFO:0000840;;EMAPA:19252;;EV:0100077;;FMA:7201;;GAID:306;;galen:LargeIntestine;;MA:0000333;;MESH:A.03.492.411.495;;MIAA:0000046;;ncithesaurus:Large_Intestine;;OpenCyc:Mx4rvVkF5pwpEbGdrcN5Y29ycA;;SCTID:181254001;;VHOG:0000054;;XAO:0000131
|is_a=UBERON:0000062;;UBERON:0004119
|synonym="intestinum crassum" RELATED [BTO:0000706]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The large intestine consists of the cecum and colon[WP]. Organ with organ cavity which is continuous proximally with the small intestine and distally with the anal canal.[FMA]." [FMA:7201, Wikipedia:Large_intestine_(anatomy)]
|subset=major_organ;;organ_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000059
|is_a=UBERON:0004921 ;;UBERON:0013765
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0000160
|name=large intestine
|namespace=
|obo_creation_date=
|part_of=UBERON:0000160;;UBERON:0004907
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=major_organ;;organ_slim
|preceded_by=
|synonym="intestinum crassum" RELATED [BTO:0000706]
|union_of=
|xref=AAO:0010396;;BTO:0000706;;EFO:0000840;;EMAPA:19252;;EV:0100077;;FMA:7201;;GAID:306;;galen:LargeIntestine;;MA:0000333;;MESH:A.03.492.411.495;;MIAA:0000046;;ncithesaurus:Large_Intestine;;OpenCyc:Mx4rvVkF5pwpEbGdrcN5Y29ycA;;SCTID:181254001;;VHOG:0000054;;XAO:0000131
}}
}}

Revision as of 10:50, 12 September 2014

Name:large intestine
Definition:"The large intestine consists of the cecum and colon[WP]. Organ with organ cavity which is continuous proximally with the small intestine and distally with the anal canal.[FMA]." [FMA:7201, Wikipedia:Large_intestine_(anatomy)]
Xrefs:
links:

AAO:0010396
BTO:0000706
EFO:0000840
EMAPA:19252
EV:0100077
FMA:7201
GAID:306
galen:LargeIntestine
MA:0000333
MESH:A.03.492.411.495
MIAA:0000046
ncithesaurus:Large_Intestine
OpenCyc:Mx4rvVkF5pwpEbGdrcN5Y29ycA
SCTID:181254001
VHOG:0000054

XAO:0000131
Synonyms: "intestinum crassum" RELATED [BTO:0000706]
Subset: major_organ
organ_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004921(subdivision of digestive tract),UBERON:0013765(digestive system element)
part_of:UBERON:0000160(intestine),UBERON:0004907(lower digestive tract)



Children

part of:UBERON:0001052 (rectum),UBERON:0001153 (caecum),UBERON:0001155 (colon),CL:0002253 (epithelial cell of large intestine),CL:1000279 (smooth muscle cell of large intestine)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000059 (large intestine), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.93e-89FFCP PHASE2:Hg19::chr7:100612647..100612650,+#_e0ef8db3b47b2660f8257949871a786ap8@MUC12
1.93e-89FFCP PHASE1:Hg19::chr7:100612647..100612650,+#_e0ef8db3b47b2660f8257949871a786ap8@MUC12
1.93e-89FFCP PHASE2:Hg19::chr2:200333534..200333558,+#_e0ef8db3b47b2660f8257949871a786ap1@ENST00000446911
1.93e-89FFCP PHASE1:Hg19::chr2:200333534..200333558,+#_e0ef8db3b47b2660f8257949871a786ap1@ENST00000446911
1.93e-89FFCP PHASE2:Hg19::chr11:114430570..114430581,-#_e0ef8db3b47b2660f8257949871a786ap2@FAM55A
1.93e-89FFCP PHASE1:Hg19::chr11:114430570..114430581,-#_e0ef8db3b47b2660f8257949871a786ap2@FAM55A
8.79e-75FFCP PHASE1:Hg19::chr11:114522262..114522267,-#_3670c2107c69b4d3d2a5f3a07bbb5295p@chr11:114522262..114522267, -
8.79e-75FFCP PHASE2:Hg19::chr11:114522262..114522267,-#_3670c2107c69b4d3d2a5f3a07bbb5295p@chr11:114522262..114522267, -
6.65e-72FFCP PHASE2:Hg19::chr13:28541477..28541493,-#_511c77587a2abce51e705b8314cbb49ap6@CDX2
6.65e-72FFCP PHASE1:Hg19::chr13:28541477..28541493,-#_511c77587a2abce51e705b8314cbb49ap6@CDX2
6.65e-72FFCP PHASE2:Hg19::chr2:200329672..200329678,-#_511c77587a2abce51e705b8314cbb49ap50@SATB2
6.65e-72FFCP PHASE1:Hg19::chr2:200329672..200329678,-#_511c77587a2abce51e705b8314cbb49ap50@SATB2
6.65e-72FFCP PHASE2:Hg19::chr4:150822397..150822409,-#_511c77587a2abce51e705b8314cbb49ap@chr4:150822397..150822409, -
6.65e-72FFCP PHASE1:Hg19::chr4:150822397..150822409,-#_511c77587a2abce51e705b8314cbb49ap@chr4:150822397..150822409, -
6.65e-72FFCP PHASE2:Hg19::chr11:60260248..60260251,+#_511c77587a2abce51e705b8314cbb49ap1@MS4A12
6.65e-72FFCP PHASE1:Hg19::chr11:60260248..60260251,+#_511c77587a2abce51e705b8314cbb49ap1@MS4A12
1.86e-64FFCP PHASE1:Hg19::chr17:46716676..46716698,-#_43b199a6a22e1331af5c5099858644eep1@ENST00000438772
1.86e-64FFCP PHASE2:Hg19::chr17:46716676..46716698,-#_43b199a6a22e1331af5c5099858644eep1@ENST00000438772
2.63e-64FFCP PHASE2:Hg19::chr8:86253920..86253944,-#_bc1a2dd7a3b0d2cfb6c921135e51c525p2@CA1
2.63e-64FFCP PHASE2:Hg19::chr7:100612686..100612700,+#_bc1a2dd7a3b0d2cfb6c921135e51c525p3@MUC12
2.63e-64FFCP PHASE1:Hg19::chr7:100612686..100612700,+#_bc1a2dd7a3b0d2cfb6c921135e51c525p3@MUC12
2.63e-64FFCP PHASE1:Hg19::chr8:86253920..86253944,-#_bc1a2dd7a3b0d2cfb6c921135e51c525p2@CA1
2.99e-64FFCP PHASE2:Hg19::chr7:100612141..100612155,-#_32f6c19460e332dbaea7170ab9fd4113p@chr7:100612141..100612155, -
2.99e-64FFCP PHASE1:Hg19::chr7:100612141..100612155,-#_32f6c19460e332dbaea7170ab9fd4113p@chr7:100612141..100612155, -
3.21e-64FFCP PHASE2:Hg19::chr1:167059763..167059776,-#_99bb6111c6791aac4c4d66cf739c9702p4@GPA33
3.21e-64FFCP PHASE1:Hg19::chr1:167059763..167059776,-#_99bb6111c6791aac4c4d66cf739c9702p4@GPA33
5.05e-64FFCP PHASE2:Hg19::chr3:108476254..108476257,-#_c565b2292ee777ffeba85066897724bdp1@RETNLB
5.05e-64FFCP PHASE1:Hg19::chr3:108476254..108476257,-#_c565b2292ee777ffeba85066897724bdp1@RETNLB
6.55e-64FFCP PHASE2:Hg19::chr6:168479694..168479708,-#_6d83b0f1dc766fa745bee8e3e8935610p3@FRMD1
6.55e-64FFCP PHASE1:Hg19::chr6:168479694..168479708,-#_6d83b0f1dc766fa745bee8e3e8935610p3@FRMD1
1.57e-58FFCP PHASE2:Hg19::chr2:128293323..128293332,+#_da172fc7c4db0b1d9e674e8265a32773p4@MYO7B
1.57e-58FFCP PHASE1:Hg19::chr2:128293323..128293332,+#_da172fc7c4db0b1d9e674e8265a32773p4@MYO7B
2.84e-58FFCP PHASE2:Hg19::chr13:28543409..28543420,-#_a75cc0a665ad9e923f9e1caf10018561p8@CDX2
2.84e-58FFCP PHASE1:Hg19::chr13:28543409..28543420,-#_a75cc0a665ad9e923f9e1caf10018561p8@CDX2
2.85e-58FFCP PHASE2:Hg19::chr4:120243266..120243277,-#_cdb8ba220f7d430e3fb432f066212684p2@FABP2
2.85e-58FFCP PHASE1:Hg19::chr4:120243266..120243277,-#_cdb8ba220f7d430e3fb432f066212684p2@FABP2
8.62e-58FFCP PHASE1:Hg19::chr16:67463701..67463709,+#_812689294b7ac7d20635fa8addd28fc3p@chr16:67463701..67463709, +
8.62e-58FFCP PHASE2:Hg19::chr16:67463701..67463709,+#_812689294b7ac7d20635fa8addd28fc3p@chr16:67463701..67463709, +
1.15e-57FFCP PHASE1:Hg19::chr16:25228264..25228273,+#_61b98514ad7b8f13b8a129f62bda7346p1@AQP8
1.15e-57FFCP PHASE1:Hg19::chr6:168479679..168479688,-#_61b98514ad7b8f13b8a129f62bda7346p6@FRMD1
1.15e-57FFCP PHASE2:Hg19::chr16:25228264..25228273,+#_61b98514ad7b8f13b8a129f62bda7346p1@AQP8
1.15e-57FFCP PHASE2:Hg19::chr6:168479679..168479688,-#_61b98514ad7b8f13b8a129f62bda7346p6@FRMD1
1.34e-57FFCP PHASE2:Hg19::chr17:26800296..26800314,+#_ff85cf102c3eb2fc36f71f07591492e3p4@SLC13A2
1.34e-57FFCP PHASE1:Hg19::chr17:26800296..26800314,+#_ff85cf102c3eb2fc36f71f07591492e3p4@SLC13A2
1.55e-57FFCP PHASE2:Hg19::chr21:44151910..44151921,+#_20958fcbf10dc446e0803b6d9e4e1a18p7@PDE9A
1.55e-57FFCP PHASE1:Hg19::chr21:44151910..44151921,+#_20958fcbf10dc446e0803b6d9e4e1a18p7@PDE9A
1.91e-56FFCP PHASE1:Hg19::chr11:114430588..114430608,-#_bd0492cd43650158a7649ea692322024p1@FAM55A
1.91e-56FFCP PHASE2:Hg19::chr11:114430588..114430608,-#_bd0492cd43650158a7649ea692322024p1@FAM55A
3.01e-56FFCP PHASE1:Hg19::chr11:114466397..114466426,-#_f405bffb2bfc660b984437dd1624883dp2@FAM55D
3.01e-56FFCP PHASE2:Hg19::chr11:114466397..114466426,-#_f405bffb2bfc660b984437dd1624883dp2@FAM55D
2.16e-54FFCP PHASE2:Hg19::chr15:45950466..45950474,+#_8e5549b936d12f2e3b03ca6f7e68b51dp@chr15:45950466..45950474, +
2.16e-54FFCP PHASE2:Hg19::chr1:38201159..38201166,-#_8e5549b936d12f2e3b03ca6f7e68b51dp@chr1:38201159..38201166, -
2.16e-54FFCP PHASE1:Hg19::chr1:38201159..38201166,-#_8e5549b936d12f2e3b03ca6f7e68b51dp@chr1:38201159..38201166, -
2.16e-54FFCP PHASE1:Hg19::chr15:45950466..45950474,+#_8e5549b936d12f2e3b03ca6f7e68b51dp@chr15:45950466..45950474, +
5.44e-54FFCP PHASE2:Hg19::chr10:101292731..101292741,+#_cb56c1337ac6bb8b233b1542337a0746p2@NKX2-3
5.44e-54FFCP PHASE1:Hg19::chr10:101292731..101292741,+#_cb56c1337ac6bb8b233b1542337a0746p2@NKX2-3
5.49e-54FFCP PHASE2:Hg19::chr3:150966718..150966738,-#_1c5eda44027de98243c059e1b47cd68fp9@P2RY14
5.49e-54FFCP PHASE1:Hg19::chr3:150966718..150966738,-#_1c5eda44027de98243c059e1b47cd68fp9@P2RY14
2.22e-52FFCP PHASE2:Hg19::chr13:28543388..28543406,-#_6629338f726055b67e9e64916110036dp3@CDX2
2.22e-52FFCP PHASE1:Hg19::chr13:28543388..28543406,-#_6629338f726055b67e9e64916110036dp3@CDX2
2.2e-51FFCP PHASE2:Hg19::chr11:69294647..69294668,-#_45d0e189f9ef8c13183d343e914ec829p1@ENST00000542064
2.2e-51FFCP PHASE1:Hg19::chr11:69294647..69294668,-#_45d0e189f9ef8c13183d343e914ec829p1@ENST00000542064
1.86e-50FFCP PHASE2:Hg19::chr13:28543253..28543276,-#_1fa0087b957c937c2f317dd5e6166e7bp5@CDX2
1.86e-50FFCP PHASE1:Hg19::chr13:28543253..28543276,-#_1fa0087b957c937c2f317dd5e6166e7bp5@CDX2
4.97e-50FFCP PHASE1:Hg19::chrX:100129340..100129353,-#_8e7670dc839cadb743850e3e6b2533dep2@NOX1
4.97e-50FFCP PHASE2:Hg19::chrX:100129340..100129353,-#_8e7670dc839cadb743850e3e6b2533dep2@NOX1
6.89e-50FFCP PHASE1:Hg19::chr4:2038275..2038288,+#_930f1e9d3c3db1d6789ee1504bc8f2b8p@chr4:2038275..2038288, +
6.89e-50FFCP PHASE2:Hg19::chr4:2038275..2038288,+#_930f1e9d3c3db1d6789ee1504bc8f2b8p@chr4:2038275..2038288, +
8.44e-50FFCP PHASE2:Hg19::chr9:22113541..22113546,+#_cf09598e0e2a006fc04b1a490d92e677p3@CDKN2B-AS
8.44e-50FFCP PHASE1:Hg19::chr9:22113541..22113546,+#_cf09598e0e2a006fc04b1a490d92e677p3@CDKN2B-AS
1.62e-49FFCP PHASE1:Hg19::chrX:65382664..65382675,+#_b69a79cae28dcd95c08fbd4b54247173p8@HEPH
1.62e-49FFCP PHASE2:Hg19::chrX:65382664..65382675,+#_b69a79cae28dcd95c08fbd4b54247173p8@HEPH
1.89e-49FFCP PHASE2:Hg19::chr5:180415839..180415851,+#_3996e958ba65cac9b1232007771870c5p2@BTNL3
1.89e-49FFCP PHASE1:Hg19::chr5:180415839..180415851,+#_3996e958ba65cac9b1232007771870c5p2@BTNL3
5.62e-49FFCP PHASE1:Hg19::chr17:48844868..48844891,-#_cc548a3f7f66a16b28d7ecfa8dce2079p1@LINC00483
5.62e-49FFCP PHASE2:Hg19::chr17:48844868..48844891,-#_cc548a3f7f66a16b28d7ecfa8dce2079p1@LINC00483
2.86e-48FFCP PHASE1:Hg19::chr16:29748234..29748245,-#_7f675bac2b7f8085923e8a2d5b50f838p@chr16:29748234..29748245, -
2.86e-48FFCP PHASE2:Hg19::chr16:29748234..29748245,-#_7f675bac2b7f8085923e8a2d5b50f838p@chr16:29748234..29748245, -
3.24e-48FFCP PHASE2:Hg19::chr1:155912696..155912738,-#_f03cc79dfac07a3deb9d30c1fb52aceep@chr1:155912696..155912738, -
3.24e-48FFCP PHASE1:Hg19::chr1:155912696..155912738,-#_f03cc79dfac07a3deb9d30c1fb52aceep@chr1:155912696..155912738, -
4.13e-48FFCP PHASE2:Hg19::chr21:44151895..44151908,+#_e3eb46edc452ffef4c5bc335e2a00143p6@PDE9A
4.13e-48FFCP PHASE1:Hg19::chr21:44151895..44151908,+#_e3eb46edc452ffef4c5bc335e2a00143p6@PDE9A
1.96e-46FFCP PHASE2:Hg19::chrX:100129320..100129329,-#_7997139ce6a72f547da8d4bcf2111f71p3@NOX1
1.96e-46FFCP PHASE1:Hg19::chrX:100129320..100129329,-#_7997139ce6a72f547da8d4bcf2111f71p3@NOX1
2.21e-46FFCP PHASE1:Hg19::chr17:48844903..48844922,-#_6916b8f71c54b0f5acb248b81edcfe96p2@LINC00483
2.21e-46FFCP PHASE2:Hg19::chr17:48844903..48844922,-#_6916b8f71c54b0f5acb248b81edcfe96p2@LINC00483
5.02e-46FFCP PHASE2:Hg19::chrX:65382622..65382653,+#_c91aa4f363792d97efb24cd634dfd17fp3@HEPH
5.02e-46FFCP PHASE1:Hg19::chrX:65382622..65382653,+#_c91aa4f363792d97efb24cd634dfd17fp3@HEPH
1.1e-45FFCP PHASE2:Hg19::chr5:180326145..180326166,+#_c56c14549834a7dc5366752db2b2a17fp1@BTNL8
1.1e-45FFCP PHASE1:Hg19::chr5:180326145..180326166,+#_c56c14549834a7dc5366752db2b2a17fp1@BTNL8
3.4e-45FFCP PHASE2:Hg19::chr16:1275258..1275289,-#_86ae148ecfd184676642d48b54dad909p1@TPSG1
3.4e-45FFCP PHASE1:Hg19::chr16:1275258..1275289,-#_86ae148ecfd184676642d48b54dad909p1@TPSG1
4.08e-45FFCP PHASE1:Hg19::chr16:29789573..29789606,+#_5edce08c64283c258b5cba1d29102edap1@ZG16
4.08e-45FFCP PHASE2:Hg19::chr16:29789573..29789606,+#_5edce08c64283c258b5cba1d29102edap1@ZG16
4.9e-45FFCP PHASE1:Hg19::chr14:103389369..103389380,+#_5a2d5035d727311175446b18c1e9157dp3@AMN
4.9e-45FFCP PHASE2:Hg19::chr14:103389369..103389380,+#_5a2d5035d727311175446b18c1e9157dp3@AMN
6.44e-45FFCP PHASE2:Hg19::chr1:167059674..167059697,-#_6b443a13db39eae3c402101bb81fe564p3@GPA33
6.44e-45FFCP PHASE1:Hg19::chr1:167059674..167059697,-#_6b443a13db39eae3c402101bb81fe564p3@GPA33
4.52e-44FFCP PHASE1:Mm9::chr14:93595014..93595015,-#_14e5eda10e047381b44f84a8e287bce7p@chr14:93595014..93595015, -
4.52e-44FFCP PHASE1:Mm9::chr4:82849680..82849681,-#_14e5eda10e047381b44f84a8e287bce7p@chr4:82849680..82849681, -

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