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{{DOID
{{DOID
|id=DOID:7
|alt_id=DOID:1;;DOID:2;;DOID:5;;DOID:71;;DOID:72;;DOID:8
|name=disease of anatomical entity
|namespace=disease_ontology
|def="A disease that manifests in a defined anatomical structure." [DO:wk\,ls, URL:http://www2.merriam-webster.com/cgi-bin/mwmednlm?book=Medical&va=anatomic]
|xref=
|is_a=DOID:4
|synonym=
|comment=
|comment=
|alt_id=DOID:1;;DOID:2;;DOID:5;;DOID:71;;DOID:72;;DOID:8
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A disease that manifests in a defined anatomical structure." [DO:wk\,ls, URL:http://www2.merriam-webster.com/cgi-bin/mwmednlm?book
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:7
|is_a=DOID:4
|is_obsolete=
|located_in=
|located_in=
|name=disease of anatomical entity
|namespace=disease_ontology
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym=
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|xref=
}}
}}

Revision as of 10:36, 12 September 2014

Name:disease of anatomical entity
Namespace:disease_ontology
Definition:"A disease that manifests in a defined anatomical structure." [DO:wk\,ls, URL:http://www2.merriam-webster.com/cgi-bin/mwmednlm?book
Alt_id: DOID:1
DOID:2
DOID:5
DOID:71
DOID:72
DOID:8

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:4(disease)



Children


is a:FF:0100372 (bone cancer cell),FF:0102817 (esophageal cancer cell line),FF:10810-111A9 (adrenal cortex adenocarcinoma cell line:SW-13),DOID:1287 (cardiovascular system disease),DOID:1579 (respiratory system disease),DOID:17 (musculoskeletal system disease),DOID:2914 (immune system disease),DOID:77 (gastrointestinal system disease),DOID:863 (nervous system disease)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:7 (disease of anatomical entity), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.3e-21FFCP PHASE2:Hg19::chr12:53359307..53359335,+#_e61fac9150e439a60bac18efc0ea231ep@chr12:53359307..53359335, +
1.3e-21FFCP PHASE1:Hg19::chr12:53359307..53359335,+#_e61fac9150e439a60bac18efc0ea231ep@chr12:53359307..53359335, +
1.54e-21FFCP PHASE2:Hg19::chr6:112114955..112114966,-#_9b6e744e6910c7ddd2f9d00e3014686cp26@FYN
1.54e-21FFCP PHASE1:Hg19::chr6:112114955..112114966,-#_9b6e744e6910c7ddd2f9d00e3014686cp26@FYN
4.38e-21FFCP PHASE1:Hg19::chr17:41327771..41327784,+#_7b357a2babd01a9a7b766cbecff511d1p2@CU679501
4.38e-21FFCP PHASE2:Hg19::chr10:106013815..106013828,+#_7b357a2babd01a9a7b766cbecff511d1p9@GSTO1
4.38e-21FFCP PHASE2:Hg19::chr9:33816391..33816411,+#_7b357a2babd01a9a7b766cbecff511d1p@chr9:33816391..33816411, +
4.38e-21FFCP PHASE1:Hg19::chr10:106013815..106013828,+#_7b357a2babd01a9a7b766cbecff511d1p9@GSTO1
4.38e-21FFCP PHASE2:Hg19::chrX:50174615..50174630,-#_7b357a2babd01a9a7b766cbecff511d1p@chrX:50174615..50174630, -
4.38e-21FFCP PHASE2:Hg19::chr17:14276770..14276781,+#_7b357a2babd01a9a7b766cbecff511d1p@chr17:14276770..14276781, +
4.38e-21FFCP PHASE2:Hg19::chr7:44581054..44581057,+#_7b357a2babd01a9a7b766cbecff511d1p@chr7:44581054..44581057, +
4.38e-21FFCP PHASE1:Hg19::chrX:50174615..50174630,-#_7b357a2babd01a9a7b766cbecff511d1p@chrX:50174615..50174630, -
4.38e-21FFCP PHASE2:Hg19::chr15:33180439..33180446,-#_7b357a2babd01a9a7b766cbecff511d1p@chr15:33180439..33180446, -
4.38e-21FFCP PHASE1:Hg19::chr17:14276770..14276781,+#_7b357a2babd01a9a7b766cbecff511d1p@chr17:14276770..14276781, +
4.38e-21FFCP PHASE2:Hg19::chrX:50174632..50174645,-#_7b357a2babd01a9a7b766cbecff511d1p@chrX:50174632..50174645, -
4.38e-21FFCP PHASE1:Hg19::chr7:44581054..44581057,+#_7b357a2babd01a9a7b766cbecff511d1p@chr7:44581054..44581057, +
4.38e-21FFCP PHASE1:Hg19::chr9:33816391..33816411,+#_7b357a2babd01a9a7b766cbecff511d1p@chr9:33816391..33816411, +
4.38e-21FFCP PHASE2:Hg19::chr17:74574500..74574512,-#_7b357a2babd01a9a7b766cbecff511d1p@chr17:74574500..74574512, -
4.38e-21FFCP PHASE1:Hg19::chr15:33180439..33180446,-#_7b357a2babd01a9a7b766cbecff511d1p@chr15:33180439..33180446, -
4.38e-21FFCP PHASE2:Hg19::chrX:74869077..74869082,-#_7b357a2babd01a9a7b766cbecff511d1p@chrX:74869077..74869082, -
4.38e-21FFCP PHASE2:Hg19::chr1:1874589..1874599,+#_7b357a2babd01a9a7b766cbecff511d1p@chr1:1874589..1874599, +
4.38e-21FFCP PHASE2:Hg19::chr8:146051115..146051126,-#_7b357a2babd01a9a7b766cbecff511d1p@chr8:146051115..146051126, -
4.38e-21FFCP PHASE1:Hg19::chrX:50174632..50174645,-#_7b357a2babd01a9a7b766cbecff511d1p@chrX:50174632..50174645, -
4.38e-21FFCP PHASE2:Hg19::chr2:242710114..242710126,+#_7b357a2babd01a9a7b766cbecff511d1p@chr2:242710114..242710126, +
4.38e-21FFCP PHASE2:Hg19::chr2:11505541..11505552,-#_7b357a2babd01a9a7b766cbecff511d1p2@ENST00000430897
4.38e-21FFCP PHASE2:Hg19::chr7:138250447..138250450,-#_7b357a2babd01a9a7b766cbecff511d1p@chr7:138250447..138250450, -
4.38e-21FFCP PHASE2:Hg19::chr7:7222548..7222558,+#_7b357a2babd01a9a7b766cbecff511d1p@chr7:7222548..7222558, +
4.38e-21FFCP PHASE2:Hg19::chrX:50174557..50174568,-#_7b357a2babd01a9a7b766cbecff511d1p@chrX:50174557..50174568, -
4.38e-21FFCP PHASE1:Hg19::chrX:74869077..74869082,-#_7b357a2babd01a9a7b766cbecff511d1p@chrX:74869077..74869082, -
4.38e-21FFCP PHASE1:Hg19::chr1:1874589..1874599,+#_7b357a2babd01a9a7b766cbecff511d1p@chr1:1874589..1874599, +
4.38e-21FFCP PHASE1:Hg19::chr8:146051115..146051126,-#_7b357a2babd01a9a7b766cbecff511d1p@chr8:146051115..146051126, -
4.38e-21FFCP PHASE1:Hg19::chr2:242710114..242710126,+#_7b357a2babd01a9a7b766cbecff511d1p@chr2:242710114..242710126, +
4.38e-21FFCP PHASE2:Hg19::chr20:62667589..62667598,+#_7b357a2babd01a9a7b766cbecff511d1p9@LINC00176
4.38e-21FFCP PHASE1:Hg19::chr7:138250447..138250450,-#_7b357a2babd01a9a7b766cbecff511d1p@chr7:138250447..138250450, -
4.38e-21FFCP PHASE1:Hg19::chr17:74574500..74574512,-#_7b357a2babd01a9a7b766cbecff511d1p@chr17:74574500..74574512, -
4.38e-21FFCP PHASE1:Hg19::chr7:7222548..7222558,+#_7b357a2babd01a9a7b766cbecff511d1p@chr7:7222548..7222558, +
4.38e-21FFCP PHASE2:Hg19::chr2:242710131..242710142,+#_7b357a2babd01a9a7b766cbecff511d1p@chr2:242710131..242710142, +
4.38e-21FFCP PHASE1:Hg19::chr20:62667589..62667598,+#_7b357a2babd01a9a7b766cbecff511d1p9@LINC00176
4.38e-21FFCP PHASE2:Hg19::chr17:41327771..41327784,+#_7b357a2babd01a9a7b766cbecff511d1p2@CU679501
4.38e-21FFCP PHASE1:Hg19::chr2:11505541..11505552,-#_7b357a2babd01a9a7b766cbecff511d1p2@ENST00000430897
4.38e-21FFCP PHASE1:Hg19::chrX:50174557..50174568,-#_7b357a2babd01a9a7b766cbecff511d1p@chrX:50174557..50174568, -
4.38e-21FFCP PHASE1:Hg19::chr2:242710131..242710142,+#_7b357a2babd01a9a7b766cbecff511d1p@chr2:242710131..242710142, +
4.21e-20FFCP PHASE2:Hg19::chr14:38060540..38060566,-#_ae687dd3c60170c81b3d357d3fc631cap@chr14:38060540..38060566, -
4.21e-20FFCP PHASE1:Hg19::chr14:38060540..38060566,-#_ae687dd3c60170c81b3d357d3fc631cap@chr14:38060540..38060566, -
1.19e-19FFCP PHASE2:Hg19::chr9:139693759..139693793,+#_c413e67519c27e93cba2b28aa7f92980p4@KIAA1984
1.19e-19FFCP PHASE1:Hg19::chr9:139693759..139693793,+#_c413e67519c27e93cba2b28aa7f92980p4@KIAA1984
1.06e-18FFCP PHASE2:Hg19::chr14:38064572..38064584,-#_6c8d6dbf6a65087d92652ddd34388b96p5@FOXA1
1.06e-18FFCP PHASE1:Hg19::chr14:38064572..38064584,-#_6c8d6dbf6a65087d92652ddd34388b96p5@FOXA1
1.65e-18FFCP PHASE1:Hg19::chr9:139693886..139693910,+#_d3a994a5f5df01707bcbe57f1015c5b2p5@KIAA1984
1.65e-18FFCP PHASE2:Hg19::chr9:139693886..139693910,+#_d3a994a5f5df01707bcbe57f1015c5b2p5@KIAA1984
1.71e-18FFCP PHASE2:Hg19::chr2:11679852..11679866,+#_3a05f7490556304bd904c70e01c3c5b5p18@GREB1
1.71e-18FFCP PHASE1:Hg19::chr2:11679852..11679866,+#_3a05f7490556304bd904c70e01c3c5b5p18@GREB1
1.87e-18FFCP PHASE2:Hg19::chr17:62770351..62770363,-#_eff4564b7ebc71de7b2b0e1906163fa3p@chr17:62770351..62770363, -
1.87e-18FFCP PHASE1:Hg19::chr17:62770351..62770363,-#_eff4564b7ebc71de7b2b0e1906163fa3p@chr17:62770351..62770363, -
1.68e-17FFCP PHASE2:Hg19::chr2:27579764..27579787,+#_69a0c6e283e41414dc7f6775883a565dp8@ENST00000453289
1.68e-17FFCP PHASE1:Hg19::chr2:27579764..27579787,+#_69a0c6e283e41414dc7f6775883a565dp8@ENST00000453289
2.66e-17FFCP PHASE2:Hg19::chr3:115511342..115511357,-#_1e584f57fae3c24dde5fd815d766457ep@chr3:115511342..115511357, -
2.66e-17FFCP PHASE1:Hg19::chr3:115511342..115511357,-#_1e584f57fae3c24dde5fd815d766457ep@chr3:115511342..115511357, -
2.97e-17FFCP PHASE2:Hg19::chr6:142623595..142623600,+#_3374de77e417b204de21956b7b2783e5p14@GPR126
2.97e-17FFCP PHASE1:Hg19::chr6:142623595..142623600,+#_3374de77e417b204de21956b7b2783e5p14@GPR126
3.49e-17FFCP PHASE2:Hg19::chr5:172721722..172721748,-#_b16130a0a0edab23a9f6b0e45160d487p1@ENST00000501670
3.49e-17FFCP PHASE1:Hg19::chr5:172721722..172721748,-#_b16130a0a0edab23a9f6b0e45160d487p1@ENST00000501670
6.08e-17FFCP PHASE1:Hg19::chr2:242750139..242750158,-#_7f4ff3bf5b92a0fe37388d750f6eee74p3@D55640
6.08e-17FFCP PHASE1:Hg19::chr3:197096551..197096578,+#_7f4ff3bf5b92a0fe37388d750f6eee74p@chr3:197096551..197096578, +
6.08e-17FFCP PHASE2:Hg19::chr2:242710152..242710173,+#_7f4ff3bf5b92a0fe37388d750f6eee74p@chr2:242710152..242710173, +
6.08e-17FFCP PHASE2:Hg19::chr9:14868978..14869003,-#_7f4ff3bf5b92a0fe37388d750f6eee74p7@FREM1
6.08e-17FFCP PHASE1:Hg19::chr2:242710152..242710173,+#_7f4ff3bf5b92a0fe37388d750f6eee74p@chr2:242710152..242710173, +
6.08e-17FFCP PHASE2:Hg19::chr2:242750092..242750115,-#_7f4ff3bf5b92a0fe37388d750f6eee74p1@D55640
6.08e-17FFCP PHASE1:Hg19::chr2:242750092..242750115,-#_7f4ff3bf5b92a0fe37388d750f6eee74p1@D55640
6.08e-17FFCP PHASE1:Hg19::chr9:14868978..14869003,-#_7f4ff3bf5b92a0fe37388d750f6eee74p7@FREM1
6.08e-17FFCP PHASE2:Hg19::chr6:34759206..34759244,+#_7f4ff3bf5b92a0fe37388d750f6eee74p@chr6:34759206..34759244, +
6.08e-17FFCP PHASE2:Hg19::chr2:242750139..242750158,-#_7f4ff3bf5b92a0fe37388d750f6eee74p3@D55640
6.08e-17FFCP PHASE2:Hg19::chr3:197096551..197096578,+#_7f4ff3bf5b92a0fe37388d750f6eee74p@chr3:197096551..197096578, +
6.08e-17FFCP PHASE1:Hg19::chr6:34759206..34759244,+#_7f4ff3bf5b92a0fe37388d750f6eee74p@chr6:34759206..34759244, +
6.34e-17FFCP PHASE1:Hg19::chr8:17773397..17773420,-#_5ed988e4f9f9c567542994341307ab88p@chr8:17773397..17773420, -
6.34e-17FFCP PHASE2:Hg19::chr20:52750070..52750079,-#_5ed988e4f9f9c567542994341307ab88p@chr20:52750070..52750079, -
6.34e-17FFCP PHASE2:Hg19::chr1:9777591..9777605,+#_5ed988e4f9f9c567542994341307ab88p@chr1:9777591..9777605, +
6.34e-17FFCP PHASE1:Hg19::chr20:52750070..52750079,-#_5ed988e4f9f9c567542994341307ab88p@chr20:52750070..52750079, -
6.34e-17FFCP PHASE2:Hg19::chr7:138001633..138001637,+#_5ed988e4f9f9c567542994341307ab88p@chr7:138001633..138001637, +
6.34e-17FFCP PHASE2:Hg19::chr1:3237334..3237343,+#_5ed988e4f9f9c567542994341307ab88p@chr1:3237334..3237343, +
6.34e-17FFCP PHASE2:Hg19::chr12:7023055..7023065,+#_5ed988e4f9f9c567542994341307ab88p30@ENO2
6.34e-17FFCP PHASE1:Hg19::chr7:138001633..138001637,+#_5ed988e4f9f9c567542994341307ab88p@chr7:138001633..138001637, +
6.34e-17FFCP PHASE1:Hg19::chr1:9777591..9777605,+#_5ed988e4f9f9c567542994341307ab88p@chr1:9777591..9777605, +
6.34e-17FFCP PHASE2:Hg19::chr17:41327736..41327748,+#_5ed988e4f9f9c567542994341307ab88p3@CU679501
6.34e-17FFCP PHASE1:Hg19::chr1:3237334..3237343,+#_5ed988e4f9f9c567542994341307ab88p@chr1:3237334..3237343, +
6.34e-17FFCP PHASE2:Hg19::chr16:30124030..30124050,-#_5ed988e4f9f9c567542994341307ab88p@chr16:30124030..30124050, -
6.34e-17FFCP PHASE1:Hg19::chr12:7023055..7023065,+#_5ed988e4f9f9c567542994341307ab88p30@ENO2
6.34e-17FFCP PHASE2:Hg19::chr20:62655876..62655885,+#_5ed988e4f9f9c567542994341307ab88p@chr20:62655876..62655885, +
6.34e-17FFCP PHASE2:Hg19::chrX:50174653..50174669,-#_5ed988e4f9f9c567542994341307ab88p@chrX:50174653..50174669, -
6.34e-17FFCP PHASE1:Hg19::chr16:30124030..30124050,-#_5ed988e4f9f9c567542994341307ab88p@chr16:30124030..30124050, -
6.34e-17FFCP PHASE1:Hg19::chr17:41327736..41327748,+#_5ed988e4f9f9c567542994341307ab88p3@CU679501
6.34e-17FFCP PHASE1:Hg19::chr20:62655876..62655885,+#_5ed988e4f9f9c567542994341307ab88p@chr20:62655876..62655885, +
6.34e-17FFCP PHASE1:Hg19::chrX:50174653..50174669,-#_5ed988e4f9f9c567542994341307ab88p@chrX:50174653..50174669, -
6.34e-17FFCP PHASE2:Hg19::chr8:17773397..17773420,-#_5ed988e4f9f9c567542994341307ab88p@chr8:17773397..17773420, -
6.89e-17FFCP PHASE2:Hg19::chr15:88119982..88120003,+#_7f24062554a889d6e6098ae2105baadep2@LINC00052
6.89e-17FFCP PHASE1:Hg19::chr15:88119982..88120003,+#_7f24062554a889d6e6098ae2105baadep2@LINC00052
7.18e-17FFCP PHASE1:Hg19::chr11:46741130..46741141,+#_7cc88257f839d7a2847a4cb766ebab77p@chr11:46741130..46741141, +
7.18e-17FFCP PHASE2:Hg19::chr11:46741130..46741141,+#_7cc88257f839d7a2847a4cb766ebab77p@chr11:46741130..46741141, +
1.67e-16FFCP PHASE2:Hg19::chr8:143844567..143844588,+#_960587a0574869007bb3ae2c378d334fp2@ENST00000523657
1.67e-16FFCP PHASE1:Hg19::chr8:143844567..143844588,+#_960587a0574869007bb3ae2c378d334fp2@ENST00000523657

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