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{{DOID
{{DOID
|id=DOID:3904
|alt_id=
|name=bronchogenic carcinoma
|namespace=disease_ontology
|def=
|xref=MSH:D002283;;NCI:C35875;;SNOMEDCT_2010_1_31:154485001;;SNOMEDCT_2010_1_31:254622008;;SNOMEDCT_2010_1_31:269561006;;SNOMEDCT_2010_1_31:363493006;;UMLS_CUI:C0007121
|is_a=DOID:1325
|synonym="BC - Bronchogenic carcinoma" EXACT [SNOMEDCT_2005_07_31:254622008];;"bronchial cancer" EXACT [CSP2005:2017-5516];;"Bronchiogenic carcinoma" EXACT [NCI2004_11_17:C35875];;"bronchogenic carcinoma" EXACT [CSP2005:2017-6052];;"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001];;"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006];;"cancer of bronchus" EXACT [SNOMEDCT_2005_07_31:363493006]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:3904
|is_a=DOID:1325
|is_obsolete=
|located_in=
|located_in=
|name=bronchogenic carcinoma
|namespace=disease_ontology
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="BC - Bronchogenic carcinoma" EXACT [SNOMEDCT_2005_07_31:254622008];;"bronchial cancer" EXACT [CSP2005:2017-5516];;"Bronchiogenic carcinoma" EXACT [NCI2004_11_17:C35875];;"bronchogenic carcinoma" EXACT [CSP2005:2017-6052];;"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001];;"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006];;"cancer of bronchus" EXACT [SNOMEDCT_2005_07_31:363493006]
|union_of=
|xref=MSH:D002283;;NCI:C35875;;SNOMEDCT_2010_1_31:154485001;;SNOMEDCT_2010_1_31:254622008;;SNOMEDCT_2010_1_31:269561006;;SNOMEDCT_2010_1_31:363493006;;UMLS_CUI:C0007121
}}
}}

Revision as of 10:35, 12 September 2014

Name:bronchogenic carcinoma
Namespace:disease_ontology
Xrefs:
links:

MSH:D002283
NCI:C35875
SNOMEDCT_2010_1_31:154485001
SNOMEDCT_2010_1_31:254622008
SNOMEDCT_2010_1_31:269561006
SNOMEDCT_2010_1_31:363493006

UMLS_CUI:C0007121
Synonyms: "BC - Bronchogenic carcinoma" EXACT [SNOMEDCT_2005_07_31:254622008]
"bronchial cancer" EXACT [CSP2005:2017-5516]
"Bronchiogenic carcinoma" EXACT [NCI2004_11_17:C35875]
"bronchogenic carcinoma" EXACT [CSP2005:2017-6052]
"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001]
"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006]
"cancer of bronchus" EXACT [SNOMEDCT_2005_07_31:363493006]

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:1325(bronchus cancer)



Children
NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3904 (bronchogenic carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.76e-57FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399533..45399540, +
4.76e-57FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399294..45399301, +
4.76e-57FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45405393..45405412, +
4.76e-57FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399263..45399274, +
4.76e-57FFCP PHASE2:Hg19::chr6:125378873..125378876,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:125378873..125378876, +
4.76e-57FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45405332..45405343, +
4.76e-57FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399245..45399258, +
4.76e-57FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399533..45399540, +
4.76e-57FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45405393..45405412, +
4.76e-57FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399294..45399301, +
4.76e-57FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399263..45399274, +
4.76e-57FFCP PHASE1:Hg19::chr6:125378873..125378876,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:125378873..125378876, +
4.76e-57FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45405332..45405343, +
4.76e-57FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399245..45399258, +
1.49e-38FFCP PHASE1:Hg19::chr6:45399724..45399733,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:45399724..45399733, +
1.49e-38FFCP PHASE1:Hg19::chr6:73786593..73786601,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:73786593..73786601, +
1.49e-38FFCP PHASE1:Hg19::chr6:45399422..45399430,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:45399422..45399430, +
1.49e-38FFCP PHASE1:Hg19::chr6:73786620..73786627,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:73786620..73786627, +
1.49e-38FFCP PHASE2:Hg19::chr8:40525350..40525354,-#_3efaffa271a7215afa8f9beebeea155ap@chr8:40525350..40525354, -
1.49e-38FFCP PHASE2:Hg19::chr6:45399724..45399733,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:45399724..45399733, +
1.49e-38FFCP PHASE2:Hg19::chr6:73786593..73786601,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:73786593..73786601, +
1.49e-38FFCP PHASE2:Hg19::chr6:45399422..45399430,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:45399422..45399430, +
1.49e-38FFCP PHASE1:Hg19::chr8:40525350..40525354,-#_3efaffa271a7215afa8f9beebeea155ap@chr8:40525350..40525354, -
1.49e-38FFCP PHASE2:Hg19::chr6:73786620..73786627,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:73786620..73786627, +
1.8e-38FFCP PHASE2:Hg19::chr18:10085554..10085562,+#_a89e065dbffaa49eaeb69500b6779beep@chr18:10085554..10085562, +
1.8e-38FFCP PHASE1:Hg19::chr18:10085554..10085562,+#_a89e065dbffaa49eaeb69500b6779beep@chr18:10085554..10085562, +
2.18e-38FFCP PHASE2:Hg19::chr2:233352641..233352675,+#_2f810072074677b83937c1f2a5e1735bp@chr2:233352641..233352675, +
2.18e-38FFCP PHASE1:Hg19::chr2:233352641..233352675,+#_2f810072074677b83937c1f2a5e1735bp@chr2:233352641..233352675, +
1.14e-32FFCP PHASE2:Hg19::chr14:106916169..106916203,+#_0f3f47edfc78ae20205a26a9a4185251p@chr14:106916169..106916203, +
1.14e-32FFCP PHASE1:Hg19::chr14:106916169..106916203,+#_0f3f47edfc78ae20205a26a9a4185251p@chr14:106916169..106916203, +
1.78e-29FFCP PHASE2:Hg19::chr8:97972117..97972120,-#_39df5efeecaef77fad20cc2f4b578036p@chr8:97972117..97972120, -
1.78e-29FFCP PHASE1:Hg19::chr8:116215335..116215378,+#_39df5efeecaef77fad20cc2f4b578036p@chr8:116215335..116215378, +
1.78e-29FFCP PHASE2:Hg19::chr7:79840323..79840338,+#_39df5efeecaef77fad20cc2f4b578036p@chr7:79840323..79840338, +
1.78e-29FFCP PHASE2:Hg19::chr7:111234799..111234807,-#_39df5efeecaef77fad20cc2f4b578036p@chr7:111234799..111234807, -
1.78e-29FFCP PHASE1:Hg19::chr2:135120480..135120481,+#_39df5efeecaef77fad20cc2f4b578036p@chr2:135120480..135120481, +
1.78e-29FFCP PHASE2:Hg19::chr12:84664687..84664694,+#_39df5efeecaef77fad20cc2f4b578036p4@ENST00000547882
1.78e-29FFCP PHASE1:Hg19::chr7:39018314..39018323,+#_39df5efeecaef77fad20cc2f4b578036p@chr7:39018314..39018323, +
1.78e-29FFCP PHASE1:Hg19::chr12:65516484..65516493,-#_39df5efeecaef77fad20cc2f4b578036p@chr12:65516484..65516493, -
1.78e-29FFCP PHASE2:Hg19::chr8:39970826..39970832,+#_39df5efeecaef77fad20cc2f4b578036p@chr8:39970826..39970832, +
1.78e-29FFCP PHASE2:Hg19::chr15:71685918..71685922,-#_39df5efeecaef77fad20cc2f4b578036p@chr15:71685918..71685922, -
1.78e-29FFCP PHASE1:Hg19::chr8:98065877..98065881,-#_39df5efeecaef77fad20cc2f4b578036p@chr8:98065877..98065881, -
1.78e-29FFCP PHASE1:Hg19::chr11:31093041..31093047,-#_39df5efeecaef77fad20cc2f4b578036p@chr11:31093041..31093047, -
1.78e-29FFCP PHASE2:Hg19::chr8:57525935..57525942,+#_39df5efeecaef77fad20cc2f4b578036p@chr8:57525935..57525942, +
1.78e-29FFCP PHASE2:Hg19::chr13:26155734..26155742,+#_39df5efeecaef77fad20cc2f4b578036p@chr13:26155734..26155742, +
1.78e-29FFCP PHASE1:Hg19::chr7:84651827..84651832,-#_39df5efeecaef77fad20cc2f4b578036p@chr7:84651827..84651832, -
1.78e-29FFCP PHASE1:Hg19::chr7:120383546..120383560,+#_39df5efeecaef77fad20cc2f4b578036p@chr7:120383546..120383560, +
1.78e-29FFCP PHASE1:Hg19::chr10:129704512..129704515,+#_39df5efeecaef77fad20cc2f4b578036p@chr10:129704512..129704515, +
1.78e-29FFCP PHASE2:Hg19::chr7:26590563..26590574,-#_39df5efeecaef77fad20cc2f4b578036p@chr7:26590563..26590574, -
1.78e-29FFCP PHASE2:Hg19::chr2:135119636..135119642,+#_39df5efeecaef77fad20cc2f4b578036p@chr2:135119636..135119642, +
1.78e-29FFCP PHASE1:Hg19::chr20:2779140..2779150,-#_39df5efeecaef77fad20cc2f4b578036p9@CPXM1
1.78e-29FFCP PHASE1:Hg19::chr2:103235035..103235044,+#_39df5efeecaef77fad20cc2f4b578036p@chr2:103235035..103235044, +
1.78e-29FFCP PHASE1:Hg19::chr13:26155734..26155742,+#_39df5efeecaef77fad20cc2f4b578036p@chr13:26155734..26155742, +
1.78e-29FFCP PHASE2:Hg19::chr7:7749088..7749127,+#_39df5efeecaef77fad20cc2f4b578036p@chr7:7749088..7749127, +
1.78e-29FFCP PHASE2:Hg19::chr4:39301903..39301910,-#_39df5efeecaef77fad20cc2f4b578036p@chr4:39301903..39301910, -
1.78e-29FFCP PHASE2:Hg19::chr3:95401565..95401581,-#_39df5efeecaef77fad20cc2f4b578036p2@ENST00000463799
1.78e-29FFCP PHASE1:Hg19::chr4:160189282..160189289,+#_39df5efeecaef77fad20cc2f4b578036p38@RAPGEF2
1.78e-29FFCP PHASE2:Hg19::chr12:79756349..79756364,-#_39df5efeecaef77fad20cc2f4b578036p@chr12:79756349..79756364, -
1.78e-29FFCP PHASE1:Hg19::chr16:13010590..13010593,+#_39df5efeecaef77fad20cc2f4b578036p@chr16:13010590..13010593, +
1.78e-29FFCP PHASE2:Hg19::chr3:150914192..150914197,+#_39df5efeecaef77fad20cc2f4b578036p@chr3:150914192..150914197, +
1.78e-29FFCP PHASE1:Hg19::chr8:97964849..97964868,-#_39df5efeecaef77fad20cc2f4b578036p@chr8:97964849..97964868, -
1.78e-29FFCP PHASE2:Hg19::chrX:48394285..48394295,+#_39df5efeecaef77fad20cc2f4b578036p@chrX:48394285..48394295, +
1.78e-29FFCP PHASE2:Hg19::chr7:95775942..95775990,-#_39df5efeecaef77fad20cc2f4b578036p@chr7:95775942..95775990, -
1.78e-29FFCP PHASE2:Hg19::chr19:46531064..46531073,+#_39df5efeecaef77fad20cc2f4b578036p@chr19:46531064..46531073, +
1.78e-29FFCP PHASE1:Hg19::chr7:79840276..79840283,+#_39df5efeecaef77fad20cc2f4b578036p@chr7:79840276..79840283, +
1.78e-29FFCP PHASE1:Hg19::chr12:84664687..84664694,+#_39df5efeecaef77fad20cc2f4b578036p4@ENST00000547882
1.78e-29FFCP PHASE2:Hg19::chr17:39140393..39140399,-#_39df5efeecaef77fad20cc2f4b578036p3@KRT40
1.78e-29FFCP PHASE1:Hg19::chr1:168756079..168756087,+#_39df5efeecaef77fad20cc2f4b578036p3@ENST00000420691
1.78e-29FFCP PHASE1:Hg19::chr15:71685918..71685922,-#_39df5efeecaef77fad20cc2f4b578036p@chr15:71685918..71685922, -
1.78e-29FFCP PHASE1:Hg19::chr12:27925654..27925663,-#_39df5efeecaef77fad20cc2f4b578036p@chr12:27925654..27925663, -
1.78e-29FFCP PHASE1:Hg19::chr11:67402354..67402359,-#_39df5efeecaef77fad20cc2f4b578036p@chr11:67402354..67402359, -
1.78e-29FFCP PHASE2:Hg19::chr6:140771120..140771128,+#_39df5efeecaef77fad20cc2f4b578036p@chr6:140771120..140771128, +
1.78e-29FFCP PHASE2:Hg19::chr2:234862436..234862439,+#_39df5efeecaef77fad20cc2f4b578036p16@TRPM8
1.78e-29FFCP PHASE2:Hg19::chr1:100110807..100110818,+#_39df5efeecaef77fad20cc2f4b578036p@chr1:100110807..100110818, +
1.78e-29FFCP PHASE2:Hg19::chr3:86701921..86701925,-#_39df5efeecaef77fad20cc2f4b578036p@chr3:86701921..86701925, -
1.78e-29FFCP PHASE2:Hg19::chr17:59657604..59657621,-#_39df5efeecaef77fad20cc2f4b578036p@chr17:59657604..59657621, -
1.78e-29FFCP PHASE2:Hg19::chr8:98104439..98104444,-#_39df5efeecaef77fad20cc2f4b578036p@chr8:98104439..98104444, -
1.78e-29FFCP PHASE2:Hg19::chr8:1616323..1616360,+#_39df5efeecaef77fad20cc2f4b578036p@chr8:1616323..1616360, +
1.78e-29FFCP PHASE2:Hg19::chr5:33619084..33619089,-#_39df5efeecaef77fad20cc2f4b578036p@chr5:33619084..33619089, -
1.78e-29FFCP PHASE2:Hg19::chr3:145094664..145094665,+#_39df5efeecaef77fad20cc2f4b578036p@chr3:145094664..145094665, +
1.78e-29FFCP PHASE1:Hg19::chr2:97626499..97626505,-#_39df5efeecaef77fad20cc2f4b578036p@chr2:97626499..97626505, -
1.78e-29FFCP PHASE1:Hg19::chr1:225650299..225650317,-#_39df5efeecaef77fad20cc2f4b578036p@chr1:225650299..225650317, -
1.78e-29FFCP PHASE2:Hg19::chr11:31093041..31093047,-#_39df5efeecaef77fad20cc2f4b578036p@chr11:31093041..31093047, -
1.78e-29FFCP PHASE2:Hg19::chrX:154251771..154251775,-#_39df5efeecaef77fad20cc2f4b578036p@chrX:154251771..154251775, -
1.78e-29FFCP PHASE1:Hg19::chr3:86703174..86703181,-#_39df5efeecaef77fad20cc2f4b578036p@chr3:86703174..86703181, -
1.78e-29FFCP PHASE2:Hg19::chr10:129704512..129704515,+#_39df5efeecaef77fad20cc2f4b578036p@chr10:129704512..129704515, +
1.78e-29FFCP PHASE1:Hg19::chr9:97856010..97856019,+#_39df5efeecaef77fad20cc2f4b578036p@chr9:97856010..97856019, +
1.78e-29FFCP PHASE1:Hg19::chr17:63528638..63528642,+#_39df5efeecaef77fad20cc2f4b578036p@chr17:63528638..63528642, +
1.78e-29FFCP PHASE2:Hg19::chr6:125378772..125378777,+#_39df5efeecaef77fad20cc2f4b578036p@chr6:125378772..125378777, +
1.78e-29FFCP PHASE2:Hg19::chr2:97626375..97626385,-#_39df5efeecaef77fad20cc2f4b578036p@chr2:97626375..97626385, -
1.78e-29FFCP PHASE2:Hg19::chr14:60194267..60194275,-#_39df5efeecaef77fad20cc2f4b578036p20@RTN1
1.78e-29FFCP PHASE2:Hg19::chr13:76688920..76688924,+#_39df5efeecaef77fad20cc2f4b578036p@chr13:76688920..76688924, +
1.78e-29FFCP PHASE1:Hg19::chr7:95766136..95766143,-#_39df5efeecaef77fad20cc2f4b578036p@chr7:95766136..95766143, -
1.78e-29FFCP PHASE1:Hg19::chr10:29213612..29213644,+#_39df5efeecaef77fad20cc2f4b578036p@chr10:29213612..29213644, +
1.78e-29FFCP PHASE1:Hg19::chr12:51116443..51116452,+#_39df5efeecaef77fad20cc2f4b578036p@chr12:51116443..51116452, +
1.78e-29FFCP PHASE1:Hg19::chr2:222160756..222160761,+#_39df5efeecaef77fad20cc2f4b578036p@chr2:222160756..222160761, +
1.78e-29FFCP PHASE1:Hg19::chr8:73794113..73794122,+#_39df5efeecaef77fad20cc2f4b578036p@chr8:73794113..73794122, +
1.78e-29FFCP PHASE1:Hg19::chr14:60194267..60194275,-#_39df5efeecaef77fad20cc2f4b578036p20@RTN1
1.78e-29FFCP PHASE1:Hg19::chr13:76688920..76688924,+#_39df5efeecaef77fad20cc2f4b578036p@chr13:76688920..76688924, +
1.78e-29FFCP PHASE2:Hg19::chr2:189756256..189756260,+#_39df5efeecaef77fad20cc2f4b578036p@chr2:189756256..189756260, +
1.78e-29FFCP PHASE2:Hg19::chr18:74671119..74671124,+#_39df5efeecaef77fad20cc2f4b578036p@chr18:74671119..74671124, +

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