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{{DOID
{{DOID
|id=DOID:1324
|alt_id=DOID:13075;;DOID:1322;;DOID:9881
|name=lung cancer
|namespace=disease_ontology
|def="A respiratory system cancer that is located_in the lung." [url:http://en.wikipedia.org/wiki/Lung_cancer]
|xref=ICD9CM:162.3;;SNOMEDCT_2010_1_31:187860004;;SNOMEDCT_2010_1_31:187863002;;SNOMEDCT_2010_1_31:187864008;;SNOMEDCT_2010_1_31:187867001;;SNOMEDCT_2010_1_31:187868006;;SNOMEDCT_2010_1_31:187871003;;SNOMEDCT_2010_1_31:187874006;;SNOMEDCT_2010_1_31:269464000;;UMLS_CUI:C0024624;;UMLS_CUI:C0153491;;UMLS_CUI:C0153492;;UMLS_CUI:C0153493
|is_a=DOID:0050615
|synonym=
|comment=
|comment=
|alt_id=DOID:13075;;DOID:1322;;DOID:9881
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A respiratory system cancer that is located_in the lung." [url:http://en.wikipedia.org/wiki/Lung_cancer]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:1324
|is_a=DOID:0050615
|is_obsolete=
|located_in=
|located_in=
|name=lung cancer
|namespace=disease_ontology
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym=
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|xref=ICD9CM:162.3;;SNOMEDCT_2010_1_31:187860004;;SNOMEDCT_2010_1_31:187863002;;SNOMEDCT_2010_1_31:187864008;;SNOMEDCT_2010_1_31:187867001;;SNOMEDCT_2010_1_31:187868006;;SNOMEDCT_2010_1_31:187871003;;SNOMEDCT_2010_1_31:187874006;;SNOMEDCT_2010_1_31:269464000;;UMLS_CUI:C0024624;;UMLS_CUI:C0153491;;UMLS_CUI:C0153492;;UMLS_CUI:C0153493
}}
}}

Revision as of 10:33, 12 September 2014

Name:lung cancer
Namespace:disease_ontology
Definition:"A respiratory system cancer that is located_in the lung." [url:http://en.wikipedia.org/wiki/Lung_cancer]
Xrefs:
links:

ICD9CM:162.3
SNOMEDCT_2010_1_31:187860004
SNOMEDCT_2010_1_31:187863002
SNOMEDCT_2010_1_31:187864008
SNOMEDCT_2010_1_31:187867001
SNOMEDCT_2010_1_31:187868006
SNOMEDCT_2010_1_31:187871003
SNOMEDCT_2010_1_31:187874006
SNOMEDCT_2010_1_31:269464000
UMLS_CUI:C0024624
UMLS_CUI:C0153491
UMLS_CUI:C0153492

UMLS_CUI:C0153493
Alt_id: DOID:13075
DOID:1322
DOID:9881

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:0050615(respiratory system cancer)



Children


is a:DOID:1325 (bronchus cancer),DOID:3905 (lung carcinoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:1324 (lung cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.45e-30FFCP PHASE2:Hg19::chr2:233352573..233352580,-#_881f7627f0bb39dce6f8d82130fabab8p4@ECEL1
2.45e-30FFCP PHASE1:Hg19::chr2:233352573..233352580,-#_881f7627f0bb39dce6f8d82130fabab8p4@ECEL1
1.82e-27FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_0c90b2c9641b7d2a52e9e0430a71bdcdp@chr6:45399294..45399301, +
1.82e-27FFCP PHASE1:Hg19::chr7:31938679..31938703,-#_0c90b2c9641b7d2a52e9e0430a71bdcdp@chr7:31938679..31938703, -
1.82e-27FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_0c90b2c9641b7d2a52e9e0430a71bdcdp@chr6:45405332..45405343, +
1.82e-27FFCP PHASE2:Hg19::chr6:125378873..125378876,+#_0c90b2c9641b7d2a52e9e0430a71bdcdp@chr6:125378873..125378876, +
1.82e-27FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_0c90b2c9641b7d2a52e9e0430a71bdcdp@chr6:45399294..45399301, +
1.82e-27FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_0c90b2c9641b7d2a52e9e0430a71bdcdp@chr6:45405332..45405343, +
1.82e-27FFCP PHASE1:Hg19::chr6:125378873..125378876,+#_0c90b2c9641b7d2a52e9e0430a71bdcdp@chr6:125378873..125378876, +
1.82e-27FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_0c90b2c9641b7d2a52e9e0430a71bdcdp@chr6:45405393..45405412, +
1.82e-27FFCP PHASE2:Hg19::chr7:157944243..157944249,-#_0c90b2c9641b7d2a52e9e0430a71bdcdp@chr7:157944243..157944249, -
1.82e-27FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_0c90b2c9641b7d2a52e9e0430a71bdcdp@chr6:45399245..45399258, +
1.82e-27FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_0c90b2c9641b7d2a52e9e0430a71bdcdp@chr6:45399533..45399540, +
1.82e-27FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_0c90b2c9641b7d2a52e9e0430a71bdcdp@chr6:45405393..45405412, +
1.82e-27FFCP PHASE1:Hg19::chr7:157944243..157944249,-#_0c90b2c9641b7d2a52e9e0430a71bdcdp@chr7:157944243..157944249, -
1.82e-27FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_0c90b2c9641b7d2a52e9e0430a71bdcdp@chr6:45399245..45399258, +
1.82e-27FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_0c90b2c9641b7d2a52e9e0430a71bdcdp@chr6:45399263..45399274, +
1.82e-27FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_0c90b2c9641b7d2a52e9e0430a71bdcdp@chr6:45399533..45399540, +
1.82e-27FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_0c90b2c9641b7d2a52e9e0430a71bdcdp@chr6:45399263..45399274, +
1.82e-27FFCP PHASE2:Hg19::chr7:31938679..31938703,-#_0c90b2c9641b7d2a52e9e0430a71bdcdp@chr7:31938679..31938703, -
1.78e-24FFCP PHASE1:Hg19::chr6:73785930..73785949,-#_719f6aeb676b3b895635698590d7b613p@chr6:73785930..73785949, -
1.78e-24FFCP PHASE2:Hg19::chr6:73785930..73785949,-#_719f6aeb676b3b895635698590d7b613p@chr6:73785930..73785949, -
1.93e-24FFCP PHASE1:Hg19::chr10:5057199..5057247,-#_7712ad52b76a5d6be571d6723537e1a4p@chr10:5057199..5057247, -
1.93e-24FFCP PHASE2:Hg19::chr10:5057199..5057247,-#_7712ad52b76a5d6be571d6723537e1a4p@chr10:5057199..5057247, -
7.51e-24FFCP PHASE1:Hg19::chr1:161085273..161085285,+#_fdf641d5d37359ef5154caa6781bb30ap@chr1:161085273..161085285, +
7.51e-24FFCP PHASE2:Hg19::chr1:161085273..161085285,+#_fdf641d5d37359ef5154caa6781bb30ap@chr1:161085273..161085285, +
1.95e-21FFCP PHASE1:Hg19::chr14:36990061..36990072,-#_9587368bf2d05a0ca9bb9ee025adad7ep11@NKX2-1
1.95e-21FFCP PHASE2:Hg19::chr14:36990061..36990072,-#_9587368bf2d05a0ca9bb9ee025adad7ep11@NKX2-1
5.53e-21FFCP PHASE2:Hg19::chr8:63077406..63077421,-#_ea4b553313db99b162fa0c781a66d717p@chr8:63077406..63077421, -
5.53e-21FFCP PHASE1:Hg19::chr8:63077406..63077421,-#_ea4b553313db99b162fa0c781a66d717p@chr8:63077406..63077421, -
1.2e-20FFCP PHASE2:Hg19::chr14:36989407..36989410,-#_9d2fa23bef08c177eff16632da0a8ee8p15@NKX2-1
1.2e-20FFCP PHASE1:Hg19::chr14:36989407..36989410,-#_9d2fa23bef08c177eff16632da0a8ee8p15@NKX2-1
1.91e-20FFCP PHASE2:Hg19::chr2:194367545..194367554,+#_f8e2296a21069037ea1e06b56c19d61cp@chr2:194367545..194367554, +
1.91e-20FFCP PHASE1:Hg19::chr2:194367545..194367554,+#_f8e2296a21069037ea1e06b56c19d61cp@chr2:194367545..194367554, +
1.04e-19FFCP PHASE2:Hg19::chr14:36989412..36989423,-#_ffff225bea2fde8e80993c84fee5d15ap12@NKX2-1
1.04e-19FFCP PHASE1:Hg19::chr14:36989412..36989423,-#_ffff225bea2fde8e80993c84fee5d15ap12@NKX2-1
1.04e-18FFCP PHASE2:Hg19::chr13:70823810..70823813,+#_a5174381efccb52017eb3ea810aa6661p@chr13:70823810..70823813, +
1.04e-18FFCP PHASE1:Hg19::chr4:3344434..3344441,+#_a5174381efccb52017eb3ea810aa6661p@chr4:3344434..3344441, +
1.04e-18FFCP PHASE2:Hg19::chr6:73786593..73786601,+#_a5174381efccb52017eb3ea810aa6661p@chr6:73786593..73786601, +
1.04e-18FFCP PHASE1:Hg19::chr12:57638896..57638928,-#_a5174381efccb52017eb3ea810aa6661p@chr12:57638896..57638928, -
1.04e-18FFCP PHASE1:Hg19::chr7:1968200..1968208,-#_a5174381efccb52017eb3ea810aa6661p@chr7:1968200..1968208, -
1.04e-18FFCP PHASE1:Hg19::chr6:45399724..45399733,+#_a5174381efccb52017eb3ea810aa6661p@chr6:45399724..45399733, +
1.04e-18FFCP PHASE2:Hg19::chr5:92526866..92526914,-#_a5174381efccb52017eb3ea810aa6661p@chr5:92526866..92526914, -
1.04e-18FFCP PHASE1:Hg19::chr6:73786593..73786601,+#_a5174381efccb52017eb3ea810aa6661p@chr6:73786593..73786601, +
1.04e-18FFCP PHASE2:Hg19::chr6:73786620..73786627,+#_a5174381efccb52017eb3ea810aa6661p@chr6:73786620..73786627, +
1.04e-18FFCP PHASE2:Hg19::chr6:45399422..45399430,+#_a5174381efccb52017eb3ea810aa6661p@chr6:45399422..45399430, +
1.04e-18FFCP PHASE1:Hg19::chr13:70823810..70823813,+#_a5174381efccb52017eb3ea810aa6661p@chr13:70823810..70823813, +
1.04e-18FFCP PHASE1:Hg19::chr5:92526866..92526914,-#_a5174381efccb52017eb3ea810aa6661p@chr5:92526866..92526914, -
1.04e-18FFCP PHASE1:Hg19::chr6:73786620..73786627,+#_a5174381efccb52017eb3ea810aa6661p@chr6:73786620..73786627, +
1.04e-18FFCP PHASE1:Hg19::chr6:45399422..45399430,+#_a5174381efccb52017eb3ea810aa6661p@chr6:45399422..45399430, +
1.04e-18FFCP PHASE1:Hg19::chr11:69518108..69518118,-#_a5174381efccb52017eb3ea810aa6661p@chr11:69518108..69518118, -
1.04e-18FFCP PHASE2:Hg19::chr11:69518108..69518118,-#_a5174381efccb52017eb3ea810aa6661p@chr11:69518108..69518118, -
1.04e-18FFCP PHASE2:Hg19::chr12:57638896..57638928,-#_a5174381efccb52017eb3ea810aa6661p@chr12:57638896..57638928, -
1.04e-18FFCP PHASE2:Hg19::chr7:1968190..1968198,-#_a5174381efccb52017eb3ea810aa6661p@chr7:1968190..1968198, -
1.04e-18FFCP PHASE2:Hg19::chr8:40525350..40525354,-#_a5174381efccb52017eb3ea810aa6661p@chr8:40525350..40525354, -
1.04e-18FFCP PHASE1:Hg19::chr11:69518332..69518343,-#_a5174381efccb52017eb3ea810aa6661p@chr11:69518332..69518343, -
1.04e-18FFCP PHASE2:Hg19::chr4:3344434..3344441,+#_a5174381efccb52017eb3ea810aa6661p@chr4:3344434..3344441, +
1.04e-18FFCP PHASE2:Hg19::chr11:69518332..69518343,-#_a5174381efccb52017eb3ea810aa6661p@chr11:69518332..69518343, -
1.04e-18FFCP PHASE1:Hg19::chr7:1968190..1968198,-#_a5174381efccb52017eb3ea810aa6661p@chr7:1968190..1968198, -
1.04e-18FFCP PHASE2:Hg19::chr7:1968200..1968208,-#_a5174381efccb52017eb3ea810aa6661p@chr7:1968200..1968208, -
1.04e-18FFCP PHASE2:Hg19::chr6:45399724..45399733,+#_a5174381efccb52017eb3ea810aa6661p@chr6:45399724..45399733, +
1.04e-18FFCP PHASE1:Hg19::chr8:40525350..40525354,-#_a5174381efccb52017eb3ea810aa6661p@chr8:40525350..40525354, -
1.13e-18FFCP PHASE1:Hg19::chr7:44574294..44574303,-#_7bc36c7d86f0cf1e6a5c74ea74493605p@chr7:44574294..44574303, -
1.13e-18FFCP PHASE2:Hg19::chr16:19396252..19396261,+#_7bc36c7d86f0cf1e6a5c74ea74493605p@chr16:19396252..19396261, +
1.13e-18FFCP PHASE2:Hg19::chr4:3310694..3310716,-#_7bc36c7d86f0cf1e6a5c74ea74493605p@chr4:3310694..3310716, -
1.13e-18FFCP PHASE2:Hg19::chr19:6828544..6828554,+#_7bc36c7d86f0cf1e6a5c74ea74493605p@chr19:6828544..6828554, +
1.13e-18FFCP PHASE2:Hg19::chr12:53686428..53686432,+#_7bc36c7d86f0cf1e6a5c74ea74493605p@chr12:53686428..53686432, +
1.13e-18FFCP PHASE2:Hg19::chr5:77683792..77683799,+#_7bc36c7d86f0cf1e6a5c74ea74493605p@chr5:77683792..77683799, +
1.13e-18FFCP PHASE1:Hg19::chr4:3310694..3310716,-#_7bc36c7d86f0cf1e6a5c74ea74493605p@chr4:3310694..3310716, -
1.13e-18FFCP PHASE1:Hg19::chr19:6828544..6828554,+#_7bc36c7d86f0cf1e6a5c74ea74493605p@chr19:6828544..6828554, +
1.13e-18FFCP PHASE1:Hg19::chr16:19396252..19396261,+#_7bc36c7d86f0cf1e6a5c74ea74493605p@chr16:19396252..19396261, +
1.13e-18FFCP PHASE1:Hg19::chr12:53686428..53686432,+#_7bc36c7d86f0cf1e6a5c74ea74493605p@chr12:53686428..53686432, +
1.13e-18FFCP PHASE1:Hg19::chr5:77683792..77683799,+#_7bc36c7d86f0cf1e6a5c74ea74493605p@chr5:77683792..77683799, +
1.13e-18FFCP PHASE1:Hg19::chr18:10085554..10085562,+#_7bc36c7d86f0cf1e6a5c74ea74493605p@chr18:10085554..10085562, +
1.13e-18FFCP PHASE2:Hg19::chr7:44574294..44574303,-#_7bc36c7d86f0cf1e6a5c74ea74493605p@chr7:44574294..44574303, -
1.13e-18FFCP PHASE2:Hg19::chr18:10085554..10085562,+#_7bc36c7d86f0cf1e6a5c74ea74493605p@chr18:10085554..10085562, +
1.24e-18FFCP PHASE1:Hg19::chr18:71843121..71843138,+#_c5a8225237e23ce8f9924984e267540fp@chr18:71843121..71843138, +
1.24e-18FFCP PHASE1:Hg19::chr18:71843159..71843180,+#_c5a8225237e23ce8f9924984e267540fp@chr18:71843159..71843180, +
1.24e-18FFCP PHASE2:Hg19::chr18:71843121..71843138,+#_c5a8225237e23ce8f9924984e267540fp@chr18:71843121..71843138, +
1.24e-18FFCP PHASE2:Hg19::chr6:18208425..18208436,+#_c5a8225237e23ce8f9924984e267540fp@chr6:18208425..18208436, +
1.24e-18FFCP PHASE2:Hg19::chr1:156779602..156779619,-#_c5a8225237e23ce8f9924984e267540fp@chr1:156779602..156779619, -
1.24e-18FFCP PHASE2:Hg19::chr2:233352641..233352675,+#_c5a8225237e23ce8f9924984e267540fp@chr2:233352641..233352675, +
1.24e-18FFCP PHASE2:Hg19::chr18:71843159..71843180,+#_c5a8225237e23ce8f9924984e267540fp@chr18:71843159..71843180, +
1.24e-18FFCP PHASE1:Hg19::chr18:72611750..72611755,+#_c5a8225237e23ce8f9924984e267540fp@chr18:72611750..72611755, +
1.24e-18FFCP PHASE1:Hg19::chr6:18208425..18208436,+#_c5a8225237e23ce8f9924984e267540fp@chr6:18208425..18208436, +
1.24e-18FFCP PHASE1:Hg19::chr1:156779602..156779619,-#_c5a8225237e23ce8f9924984e267540fp@chr1:156779602..156779619, -
1.24e-18FFCP PHASE1:Hg19::chr2:233352641..233352675,+#_c5a8225237e23ce8f9924984e267540fp@chr2:233352641..233352675, +
1.24e-18FFCP PHASE2:Hg19::chr18:72611750..72611755,+#_c5a8225237e23ce8f9924984e267540fp@chr18:72611750..72611755, +
4.45e-18FFCP PHASE1:Hg19::chr11:123325116..123325128,+#_c425b8074bd8ebdb61b87affa5091cf5p4@ENST00000525757, p4@uc001pyv.1
4.45e-18FFCP PHASE2:Hg19::chr11:123325116..123325128,+#_c425b8074bd8ebdb61b87affa5091cf5p4@ENST00000525757, p4@uc001pyv.1
5.55e-18FFCP PHASE2:Hg19::chrY:59027988..59028000,+#_fca7849cb7b2fa0f64c495807f3bee37p@chrY:59027988..59028000, +
5.55e-18FFCP PHASE1:Hg19::chrY:59027988..59028000,+#_fca7849cb7b2fa0f64c495807f3bee37p@chrY:59027988..59028000, +
8.77e-18FFCP PHASE2:Hg19::chr14:36982935..36982943,-#_ded7a0d1e86df119554861531a80e2d3p9@SFTA3
8.77e-18FFCP PHASE1:Hg19::chr14:36982935..36982943,-#_ded7a0d1e86df119554861531a80e2d3p9@SFTA3
8.77e-18FFCP PHASE1:Hg19::chr11:17555398..17555410,-#_ded7a0d1e86df119554861531a80e2d3p9@USH1C
8.77e-18FFCP PHASE2:Hg19::chr11:17555398..17555410,-#_ded7a0d1e86df119554861531a80e2d3p9@USH1C
1.04e-17FFCP PHASE1:Hg19::chr8:73387046..73387050,-#_011f8fdf1a2512c5a49224865dd0cffcp@chr8:73387046..73387050, -
1.04e-17FFCP PHASE2:Hg19::chr5:92899690..92899725,-#_011f8fdf1a2512c5a49224865dd0cffcp@chr5:92899690..92899725, -
1.04e-17FFCP PHASE1:Hg19::chr5:92899690..92899725,-#_011f8fdf1a2512c5a49224865dd0cffcp@chr5:92899690..92899725, -
1.04e-17FFCP PHASE2:Hg19::chr8:73387046..73387050,-#_011f8fdf1a2512c5a49224865dd0cffcp@chr8:73387046..73387050, -

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