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{{DOID
{{DOID
|id=DOID:1036
|alt_id=
|name=chronic leukemia
|namespace=disease_ontology
|def="A leukemia that develops slowly." [url:http://www.nlm.nih.gov/medlineplus/leukemiaadultchronic.html]
|xref=UMLS_CUI:C0085670
|is_a=DOID:1240
|synonym="adult chronic leukemia" RELATED [];;"CLL" RELATED [];;"CML" RELATED []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A leukemia that develops slowly." [url:http://www.nlm.nih.gov/medlineplus/leukemiaadultchronic.html]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:1036
|is_a=DOID:1240
|is_obsolete=
|located_in=
|located_in=
|name=chronic leukemia
|namespace=disease_ontology
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="adult chronic leukemia" RELATED [];;"CLL" RELATED [];;"CML" RELATED []
|union_of=
|xref=UMLS_CUI:C0085670
}}
}}

Revision as of 10:32, 12 September 2014

Name:chronic leukemia
Namespace:disease_ontology
Definition:"A leukemia that develops slowly." [url:http://www.nlm.nih.gov/medlineplus/leukemiaadultchronic.html]
Xrefs:
links:
UMLS_CUI:C0085670
Synonyms: "adult chronic leukemia" RELATED []
"CLL" RELATED []
"CML" RELATED []

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:1240(leukemia)



Children


is a:DOID:1040 (chronic lymphocytic leukemia)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

  • 10409-106B4 (chronic myelogenous leukemia cell line:KU812)
  • 10416-106C2 (chronic lymphocytic leukemia (T-CLL) cell line:SKW-3)
  • 10454-106G4 (chronic myelogenous leukemia cell line:K562)
  • 10725-110A5
  • 10752-110D5 (leukemia, chronic megakaryoblastic cell line:MEG-01)
  • 10801-110I9 (chronic myeloblastic leukemia (CML) cell line:KCL-22)
  • 10824-111C5 (chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep1)
  • 10825-111C6 (chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep2)
  • 10826-111C7 (chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep3)

Mouse (Mus musculus)

  • 10409-106B4 (chronic myelogenous leukemia cell line:KU812)
  • 10416-106C2 (chronic lymphocytic leukemia (T-CLL) cell line:SKW-3)
  • 10454-106G4 (chronic myelogenous leukemia cell line:K562)
  • 10725-110A5
  • 10752-110D5 (leukemia, chronic megakaryoblastic cell line:MEG-01)
  • 10801-110I9 (chronic myeloblastic leukemia (CML) cell line:KCL-22)
  • 10824-111C5 (chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep1)
  • 10825-111C6 (chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep2)
  • 10826-111C7 (chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep3)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:1036 (chronic leukemia), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.98e-147FFCP PHASE2:Hg19::chr1:65946823..65946834,-#_b4a44e70e6028f7557acc8db8337f75cp@chr1:65946823..65946834, -
8.98e-147FFCP PHASE1:Hg19::chr1:65946823..65946834,-#_b4a44e70e6028f7557acc8db8337f75cp@chr1:65946823..65946834, -
4.36e-126FFCP PHASE2:Hg19::chr1:15104171..15104180,-#_f4180ef39765e517ed665d9a79e86365p@chr1:15104171..15104180, -
4.36e-126FFCP PHASE1:Hg19::chr1:65946781..65946791,-#_f4180ef39765e517ed665d9a79e86365p@chr1:65946781..65946791, -
4.36e-126FFCP PHASE1:Hg19::chr1:15104171..15104180,-#_f4180ef39765e517ed665d9a79e86365p@chr1:15104171..15104180, -
4.36e-126FFCP PHASE2:Hg19::chr1:65946781..65946791,-#_f4180ef39765e517ed665d9a79e86365p@chr1:65946781..65946791, -
1.5e-122FFCP PHASE2:Hg19::chr4:10187482..10187491,-#_8ae8ffad1cdd3ceff33ac9bb95fa6d82p@chr4:10187482..10187491, -
1.5e-122FFCP PHASE2:Hg19::chr4:127656639..127656648,-#_8ae8ffad1cdd3ceff33ac9bb95fa6d82p@chr4:127656639..127656648, -
1.5e-122FFCP PHASE1:Hg19::chr4:10187460..10187471,-#_8ae8ffad1cdd3ceff33ac9bb95fa6d82p@chr4:10187460..10187471, -
1.5e-122FFCP PHASE1:Hg19::chr4:10187482..10187491,-#_8ae8ffad1cdd3ceff33ac9bb95fa6d82p@chr4:10187482..10187491, -
1.5e-122FFCP PHASE1:Hg19::chr4:127656639..127656648,-#_8ae8ffad1cdd3ceff33ac9bb95fa6d82p@chr4:127656639..127656648, -
1.5e-122FFCP PHASE2:Hg19::chr4:10187460..10187471,-#_8ae8ffad1cdd3ceff33ac9bb95fa6d82p@chr4:10187460..10187471, -
1.76e-120FFCP PHASE1:Hg19::chr6:143485995..143486013,+#_14448ddff7fe58e61f1b0c5aca33491bp7@AIG1
1.76e-120FFCP PHASE2:Hg19::chr6:143485995..143486013,+#_14448ddff7fe58e61f1b0c5aca33491bp7@AIG1
2.54e-110FFCP PHASE2:Hg19::chr21:16126130..16126154,-#_3aa3863d9e9f85461a5d7010db41c402p2@ENST00000455253
2.54e-110FFCP PHASE1:Hg19::chr21:16126130..16126154,-#_3aa3863d9e9f85461a5d7010db41c402p2@ENST00000455253
3.07e-110FFCP PHASE1:Hg19::chr21:16126181..16126192,-#_74fbe2093dc2b48b45e12edadccfc9a1p4@ENST00000455253
3.07e-110FFCP PHASE2:Hg19::chr21:16126181..16126192,-#_74fbe2093dc2b48b45e12edadccfc9a1p4@ENST00000455253
5.4e-110FFCP PHASE2:Hg19::chr14:93460574..93460583,-#_dde6ebe9ea8d8036af078338c237be1cp@chr14:93460574..93460583, -
5.4e-110FFCP PHASE1:Hg19::chr14:93460574..93460583,-#_dde6ebe9ea8d8036af078338c237be1cp@chr14:93460574..93460583, -
1.53e-109FFCP PHASE1:Hg19::chr6:143485971..143485982,+#_561c3d52d113c53d91c59c5d95eae9bfp13@AIG1
1.53e-109FFCP PHASE2:Hg19::chr6:143485971..143485982,+#_561c3d52d113c53d91c59c5d95eae9bfp13@AIG1
1.77e-102FFCP PHASE2:Hg19::chr4:127656623..127656632,-#_900e4b9148005be7f63b3141e9c31499p@chr4:127656623..127656632, -
1.77e-102FFCP PHASE1:Hg19::chr14:76724603..76724631,+#_900e4b9148005be7f63b3141e9c31499p@chr14:76724603..76724631, +
1.77e-102FFCP PHASE2:Hg19::chr14:76724603..76724631,+#_900e4b9148005be7f63b3141e9c31499p@chr14:76724603..76724631, +
1.77e-102FFCP PHASE2:Hg19::chr21:16135200..16135219,-#_900e4b9148005be7f63b3141e9c31499p@chr21:16135200..16135219, -
1.77e-102FFCP PHASE1:Hg19::chr6:37465165..37465170,+#_900e4b9148005be7f63b3141e9c31499p@chr6:37465165..37465170, +
1.77e-102FFCP PHASE2:Hg19::chr15:55529745..55529773,-#_900e4b9148005be7f63b3141e9c31499p@chr15:55529745..55529773, -
1.77e-102FFCP PHASE1:Hg19::chr15:55529745..55529773,-#_900e4b9148005be7f63b3141e9c31499p@chr15:55529745..55529773, -
1.77e-102FFCP PHASE1:Hg19::chr4:127656623..127656632,-#_900e4b9148005be7f63b3141e9c31499p@chr4:127656623..127656632, -
1.77e-102FFCP PHASE1:Hg19::chr7:106650705..106650710,+#_900e4b9148005be7f63b3141e9c31499p@chr7:106650705..106650710, +
1.77e-102FFCP PHASE1:Hg19::chr21:16135200..16135219,-#_900e4b9148005be7f63b3141e9c31499p@chr21:16135200..16135219, -
1.77e-102FFCP PHASE1:Hg19::chr15:34950105..34950148,+#_900e4b9148005be7f63b3141e9c31499p@chr15:34950105..34950148, +
1.77e-102FFCP PHASE2:Hg19::chr6:37465165..37465170,+#_900e4b9148005be7f63b3141e9c31499p@chr6:37465165..37465170, +
1.77e-102FFCP PHASE2:Hg19::chr15:34950105..34950148,+#_900e4b9148005be7f63b3141e9c31499p@chr15:34950105..34950148, +
1.77e-102FFCP PHASE2:Hg19::chr7:106650705..106650710,+#_900e4b9148005be7f63b3141e9c31499p@chr7:106650705..106650710, +
2.19e-102FFCP PHASE1:Hg19::chr9:101836652..101836660,+#_f41fdb443cd612a6aaf12a8f44326b63p@chr9:101836652..101836660, +
2.19e-102FFCP PHASE2:Hg19::chr9:101836652..101836660,+#_f41fdb443cd612a6aaf12a8f44326b63p@chr9:101836652..101836660, +
2.7e-102FFCP PHASE1:Hg19::chrX:65219618..65219630,+#_c77d0866068441c8976c8d6c63ea0a6bp1@ENST00000424241
2.7e-102FFCP PHASE2:Hg19::chrX:65219618..65219630,+#_c77d0866068441c8976c8d6c63ea0a6bp1@ENST00000424241
4.1e-102FFCP PHASE1:Hg19::chr6:68596655..68596664,-#_96c65014f3ffbdcb0d761a6514566b12p@chr6:68596655..68596664, -
4.1e-102FFCP PHASE2:Hg19::chr6:68596655..68596664,-#_96c65014f3ffbdcb0d761a6514566b12p@chr6:68596655..68596664, -
5.05e-102FFCP PHASE1:Hg19::chr10:63524414..63524429,-#_767b5d55b2d89f0ff47680ce1b9aef3cp@chr10:63524414..63524429, -
5.05e-102FFCP PHASE2:Hg19::chr10:63524414..63524429,-#_767b5d55b2d89f0ff47680ce1b9aef3cp@chr10:63524414..63524429, -
4.87e-100FFCP PHASE1:Hg19::chr6:68598674..68598685,-#_0573f1bfed20d355adfd6734ca797506p@chr6:68598674..68598685, -
4.87e-100FFCP PHASE2:Hg19::chr6:68598674..68598685,-#_0573f1bfed20d355adfd6734ca797506p@chr6:68598674..68598685, -
1.36e-99FFCP PHASE2:Hg19::chr6:68597965..68597975,-#_4445cc52d59584a07d2091ff1d76c55dp@chr6:68597965..68597975, -
1.36e-99FFCP PHASE1:Hg19::chr6:68597965..68597975,-#_4445cc52d59584a07d2091ff1d76c55dp@chr6:68597965..68597975, -
2.02e-98FFCP PHASE2:Hg19::chr15:91192144..91192162,+#_d00863742a21d23d0b04fa8b8e46e646p@chr15:91192144..91192162, +
2.02e-98FFCP PHASE1:Hg19::chr15:91192144..91192162,+#_d00863742a21d23d0b04fa8b8e46e646p@chr15:91192144..91192162, +
2.02e-98FFCP PHASE2:Hg19::chr6:68591719..68591728,-#_d00863742a21d23d0b04fa8b8e46e646p@chr6:68591719..68591728, -
2.02e-98FFCP PHASE1:Hg19::chr6:68591719..68591728,-#_d00863742a21d23d0b04fa8b8e46e646p@chr6:68591719..68591728, -
2.26e-98FFCP PHASE2:Hg19::chr3:38060565..38060575,-#_438e729319e561dc2301f9930f14872ap13@PLCD1
2.26e-98FFCP PHASE1:Hg19::chr4:10187518..10187525,-#_438e729319e561dc2301f9930f14872ap@chr4:10187518..10187525, -
2.26e-98FFCP PHASE2:Hg19::chr12:23874396..23874433,-#_438e729319e561dc2301f9930f14872ap@chr12:23874396..23874433, -
2.26e-98FFCP PHASE2:Hg19::chrX:89713597..89713607,+#_438e729319e561dc2301f9930f14872ap@chrX:89713597..89713607, +
2.26e-98FFCP PHASE1:Hg19::chr12:23874396..23874433,-#_438e729319e561dc2301f9930f14872ap@chr12:23874396..23874433, -
2.26e-98FFCP PHASE1:Hg19::chr21:25263242..25263269,+#_438e729319e561dc2301f9930f14872ap@chr21:25263242..25263269, +
2.26e-98FFCP PHASE2:Hg19::chr21:16135169..16135180,-#_438e729319e561dc2301f9930f14872ap@chr21:16135169..16135180, -
2.26e-98FFCP PHASE1:Hg19::chr3:132029141..132029151,+#_438e729319e561dc2301f9930f14872ap@chr3:132029141..132029151, +
2.26e-98FFCP PHASE2:Hg19::chr12:23874501..23874508,-#_438e729319e561dc2301f9930f14872ap@chr12:23874501..23874508, -
2.26e-98FFCP PHASE2:Hg19::chr21:16125690..16125700,-#_438e729319e561dc2301f9930f14872ap3@ENST00000454128
2.26e-98FFCP PHASE1:Hg19::chr9:132620630..132620639,+#_438e729319e561dc2301f9930f14872ap@chr9:132620630..132620639, +
2.26e-98FFCP PHASE1:Hg19::chr12:23874501..23874508,-#_438e729319e561dc2301f9930f14872ap@chr12:23874501..23874508, -
2.26e-98FFCP PHASE2:Hg19::chr4:10187518..10187525,-#_438e729319e561dc2301f9930f14872ap@chr4:10187518..10187525, -
2.26e-98FFCP PHASE1:Hg19::chr3:38060516..38060530,-#_438e729319e561dc2301f9930f14872ap10@PLCD1
2.26e-98FFCP PHASE2:Hg19::chr9:132620630..132620639,+#_438e729319e561dc2301f9930f14872ap@chr9:132620630..132620639, +
2.26e-98FFCP PHASE1:Hg19::chr9:132620647..132620657,+#_438e729319e561dc2301f9930f14872ap@chr9:132620647..132620657, +
2.26e-98FFCP PHASE1:Hg19::chr21:16135169..16135180,-#_438e729319e561dc2301f9930f14872ap@chr21:16135169..16135180, -
2.26e-98FFCP PHASE2:Hg19::chr3:38060516..38060530,-#_438e729319e561dc2301f9930f14872ap10@PLCD1
2.26e-98FFCP PHASE1:Hg19::chr21:16125690..16125700,-#_438e729319e561dc2301f9930f14872ap3@ENST00000454128
2.26e-98FFCP PHASE2:Hg19::chr3:132029141..132029151,+#_438e729319e561dc2301f9930f14872ap@chr3:132029141..132029151, +
2.26e-98FFCP PHASE1:Hg19::chr3:38060540..38060563,-#_438e729319e561dc2301f9930f14872ap7@PLCD1
2.26e-98FFCP PHASE1:Hg19::chr8:130703341..130703361,-#_438e729319e561dc2301f9930f14872ap@chr8:130703341..130703361, -
2.26e-98FFCP PHASE2:Hg19::chr9:132620647..132620657,+#_438e729319e561dc2301f9930f14872ap@chr9:132620647..132620657, +
2.26e-98FFCP PHASE1:Hg19::chr9:132620675..132620685,+#_438e729319e561dc2301f9930f14872ap@chr9:132620675..132620685, +
2.26e-98FFCP PHASE2:Hg19::chr21:25263242..25263269,+#_438e729319e561dc2301f9930f14872ap@chr21:25263242..25263269, +
2.26e-98FFCP PHASE1:Hg19::chrX:89713597..89713607,+#_438e729319e561dc2301f9930f14872ap@chrX:89713597..89713607, +
2.26e-98FFCP PHASE1:Hg19::chr2:226321257..226321288,-#_438e729319e561dc2301f9930f14872ap@chr2:226321257..226321288, -
2.26e-98FFCP PHASE2:Hg19::chr3:38060540..38060563,-#_438e729319e561dc2301f9930f14872ap7@PLCD1
2.26e-98FFCP PHASE1:Hg19::chr3:38060565..38060575,-#_438e729319e561dc2301f9930f14872ap13@PLCD1
2.26e-98FFCP PHASE2:Hg19::chr8:130703341..130703361,-#_438e729319e561dc2301f9930f14872ap@chr8:130703341..130703361, -
2.26e-98FFCP PHASE2:Hg19::chr9:132620675..132620685,+#_438e729319e561dc2301f9930f14872ap@chr9:132620675..132620685, +
2.26e-98FFCP PHASE2:Hg19::chr2:226321257..226321288,-#_438e729319e561dc2301f9930f14872ap@chr2:226321257..226321288, -
2.82e-98FFCP PHASE2:Hg19::chr15:58838947..58838952,+#_3fa8fa90b7b3a6d9cc63eecd1f4d1b27p@chr15:58838947..58838952, +
2.82e-98FFCP PHASE1:Hg19::chr15:58838947..58838952,+#_3fa8fa90b7b3a6d9cc63eecd1f4d1b27p@chr15:58838947..58838952, +
4.63e-93FFCP PHASE1:Hg19::chr6:68598190..68598207,-#_fd20ae8368d3d32e7af057fb60af3760p@chr6:68598190..68598207, -
4.63e-93FFCP PHASE2:Hg19::chr6:68598190..68598207,-#_fd20ae8368d3d32e7af057fb60af3760p@chr6:68598190..68598207, -
6.97e-93FFCP PHASE1:Hg19::chr6:68597994..68598005,-#_ace4833edaf6650f2f8ae1579a9b9964p@chr6:68597994..68598005, -
6.97e-93FFCP PHASE2:Hg19::chr6:68597994..68598005,-#_ace4833edaf6650f2f8ae1579a9b9964p@chr6:68597994..68598005, -
9.18e-92FFCP PHASE1:Hg19::chr6:68597240..68597258,-#_6cfa51c9a33d5a7122d7593a1b7837b0p@chr6:68597240..68597258, -
9.18e-92FFCP PHASE2:Hg19::chr6:68597240..68597258,-#_6cfa51c9a33d5a7122d7593a1b7837b0p@chr6:68597240..68597258, -
5.77e-89FFCP PHASE1:Hg19::chr15:34949928..34949947,+#_5efde4f4e4b71297b98791c64416212ap@chr15:34949928..34949947, +
5.77e-89FFCP PHASE2:Hg19::chr15:34949928..34949947,+#_5efde4f4e4b71297b98791c64416212ap@chr15:34949928..34949947, +
6.71e-89FFCP PHASE2:Hg19::chr1:15104189..15104213,-#_65d5eefda563353827a2efb2a8c22b25p@chr1:15104189..15104213, -
6.71e-89FFCP PHASE1:Hg19::chr1:15104189..15104213,-#_65d5eefda563353827a2efb2a8c22b25p@chr1:15104189..15104213, -
7.81e-89FFCP PHASE1:Hg19::chr6:68592711..68592723,-#_729237870131193ca1fff4f5c37de8bap@chr6:68592711..68592723, -
7.81e-89FFCP PHASE2:Hg19::chr6:68592711..68592723,-#_729237870131193ca1fff4f5c37de8bap@chr6:68592711..68592723, -
1.06e-88FFCP PHASE2:Hg19::chr7:16301644..16301664,+#_d4c6bb35e1e11311c7b21993f155e274p@chr7:16301644..16301664, +
1.06e-88FFCP PHASE1:Hg19::chr7:16301644..16301664,+#_d4c6bb35e1e11311c7b21993f155e274p@chr7:16301644..16301664, +

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