Personal tools

CL:0002588: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{CL
{{CL
|id=CL:0002588
|alt_id=
|name=smooth muscle cell of the umbilical vein
|namespace=cell
|def="A smooth muscle cell of the umbilical vein." [GOC:tfm]
|xref=
|is_a=CL:0000359
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-03-06T05:00:51Z
|def="A smooth muscle cell of the umbilical vein." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002588
|is_a=CL:0000359
|is_obsolete=
|located_in=
|located_in=
|name=smooth muscle cell of the umbilical vein
|namespace=cell
|obo_creation_date=2011-03-06T05:00:51Z
|part_of=UBERON:0002066
|part_of=UBERON:0002066
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Revision as of 10:29, 12 September 2014

Name:smooth muscle cell of the umbilical vein
Namespace:cell
Definition:"A smooth muscle cell of the umbilical vein." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-06T05:00:51Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000359(vascular associated smooth muscle cell)
part_of:UBERON:0002066(umbilical vein)



Children


derives from:FF:0000177 (human smooth muscle cell of umbilical vein sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 11541-120B2 (Smooth Muscle Cells - Umbilical Vein, donor1)
  • 11621-122B1 (Smooth Muscle Cells - Umbilical Vein, donor2)
  • 11702-123B1 (Smooth Muscle Cells - Umbilical Vein, donor3)

Mouse (Mus musculus)

  • 11541-120B2 (Smooth Muscle Cells - Umbilical Vein, donor1)
  • 11621-122B1 (Smooth Muscle Cells - Umbilical Vein, donor2)
  • 11702-123B1 (Smooth Muscle Cells - Umbilical Vein, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002588 (smooth muscle cell of the umbilical vein), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.55e-98FFCP PHASE1:Hg19::chr17:54543635..54543636,+#_6e8ecf5e79d820a9c32f1781a62925bep@chr17:54543635..54543636, +
1.55e-98FFCP PHASE1:Hg19::chr17:54543642..54543647,+#_6e8ecf5e79d820a9c32f1781a62925bep@chr17:54543642..54543647, +
1.55e-98FFCP PHASE2:Hg19::chr17:54543635..54543636,+#_6e8ecf5e79d820a9c32f1781a62925bep@chr17:54543635..54543636, +
1.55e-98FFCP PHASE2:Hg19::chr17:54543642..54543647,+#_6e8ecf5e79d820a9c32f1781a62925bep@chr17:54543642..54543647, +
3.96e-66FFCP PHASE2:Hg19::chr15:22545370..22545372,+#_04163981eabbb2b3c12fe3954f4f6c9cp@chr15:22545370..22545372, +
3.96e-66FFCP PHASE1:Hg19::chr15:22545370..22545372,+#_04163981eabbb2b3c12fe3954f4f6c9cp@chr15:22545370..22545372, +
3.58e-57FFCP PHASE1:Hg19::chr3:154801312..154801336,+#_087b34bccc75df9cdc3229a887b92689p29@MME
3.58e-57FFCP PHASE2:Hg19::chr3:154801312..154801336,+#_087b34bccc75df9cdc3229a887b92689p29@MME
2.74e-50FFCP PHASE1:Hg19::chr16:4181309..4181310,-#_8999638bdaebc785bb5287d7046ecb48p@chr16:4181309..4181310, -
2.74e-50FFCP PHASE2:Hg19::chr16:4181309..4181310,-#_8999638bdaebc785bb5287d7046ecb48p@chr16:4181309..4181310, -
3.61e-34FFCP PHASE1:Hg19::chr19:8567177..8567179,+#_855ee9936051aa0ecb31c26eead8de9dp@chr19:8567177..8567179, +
3.61e-34FFCP PHASE2:Hg19::chr19:8567177..8567179,+#_855ee9936051aa0ecb31c26eead8de9dp@chr19:8567177..8567179, +
7.05e-34FFCP PHASE1:Hg19::chr21:22496435..22496437,-#_3fb1b4901f70797dd89ee1ee16a8b77bp@chr21:22496435..22496437, -
7.05e-34FFCP PHASE2:Hg19::chr21:22496435..22496437,-#_3fb1b4901f70797dd89ee1ee16a8b77bp@chr21:22496435..22496437, -
5.2e-30FFCP PHASE1:Hg19::chr12:44152515..44152534,-#_cf050f19aa2944a97d8114f390b0c2fcp2@PUS7L
5.2e-30FFCP PHASE2:Hg19::chr12:44152515..44152534,-#_cf050f19aa2944a97d8114f390b0c2fcp2@PUS7L
8.05e-30FFCP PHASE2:Hg19::chr3:154741907..154741918,+#_0a668c24fcf2e45cc2a3ad0a089e8158p25@MME
8.05e-30FFCP PHASE1:Hg19::chr3:154741907..154741918,+#_0a668c24fcf2e45cc2a3ad0a089e8158p25@MME
6.01e-22FFCP PHASE2:Hg19::chr8:5515544..5515548,+#_9d43f806f612f76783ae31830484a693p@chr8:5515544..5515548, +
6.01e-22FFCP PHASE1:Hg19::chr8:5515544..5515548,+#_9d43f806f612f76783ae31830484a693p@chr8:5515544..5515548, +
2.08e-21FFCP PHASE1:Hg19::chr3:154797315..154797322,+#_d49b3942b82213f8fa149babb1653816p24@MME
2.08e-21FFCP PHASE2:Hg19::chr3:154797315..154797322,+#_d49b3942b82213f8fa149babb1653816p24@MME
3.81e-21FFCP PHASE1:Hg19::chr12:65928345..65928348,-#_ece5968f88125ec6be5a6c56579f64b5p@chr12:65928345..65928348, -
3.81e-21FFCP PHASE2:Hg19::chr12:65928345..65928348,-#_ece5968f88125ec6be5a6c56579f64b5p@chr12:65928345..65928348, -
4.66e-21FFCP PHASE2:Hg19::chr3:162256416..162256425,-#_943ab0485bb50f77a310a42ac85bcfccp@chr3:162256416..162256425, -
4.66e-21FFCP PHASE1:Hg19::chr3:162256416..162256425,-#_943ab0485bb50f77a310a42ac85bcfccp@chr3:162256416..162256425, -
3.67e-20FFCP PHASE1:Hg19::chr3:112320522..112320525,-#_38ccb9398865de78b31093a9bad5f308p@chr3:112320522..112320525, -
3.67e-20FFCP PHASE2:Hg19::chr3:112320522..112320525,-#_38ccb9398865de78b31093a9bad5f308p@chr3:112320522..112320525, -
8.54e-20FFCP PHASE1:Hg19::chr6:6536213..6536216,+#_eafe0a9de5769332e81b634c8d9517edp@chr6:6536213..6536216, +
8.54e-20FFCP PHASE2:Hg19::chr6:6536213..6536216,+#_eafe0a9de5769332e81b634c8d9517edp@chr6:6536213..6536216, +
6.48e-18FFCP PHASE2:Hg19::chr15:71624452..71624460,-#_ca8c643338d696a0b0539cd039323133p@chr15:71624452..71624460, -
6.48e-18FFCP PHASE1:Hg19::chr8:57390832..57390833,-#_ca8c643338d696a0b0539cd039323133p2@SEPT10P1
6.48e-18FFCP PHASE2:Hg19::chr8:57390832..57390833,-#_ca8c643338d696a0b0539cd039323133p2@SEPT10P1
6.48e-18FFCP PHASE1:Hg19::chr15:71624452..71624460,-#_ca8c643338d696a0b0539cd039323133p@chr15:71624452..71624460, -
6.23e-17FFCP PHASE2:Hg19::chr17:43685905..43685910,+#_c88541c54a44cd810d3404bb23c46638p1@RPS26P8
6.23e-17FFCP PHASE1:Hg19::chr17:43685905..43685910,+#_c88541c54a44cd810d3404bb23c46638p1@RPS26P8
7.02e-17FFCP PHASE1:Hg19::chr18:28622894..28622905,-#_42b4536e6dabf08da27a1140ffd87369p7@DSC3
7.02e-17FFCP PHASE2:Hg19::chr18:28622894..28622905,-#_42b4536e6dabf08da27a1140ffd87369p7@DSC3
6.98e-16FFCP PHASE1:Hg19::chr18:28621487..28621504,+#_9ae8f3c71322662dd59bd2d04198c87cp@chr18:28621487..28621504, +
6.98e-16FFCP PHASE2:Hg19::chr18:28621487..28621504,+#_9ae8f3c71322662dd59bd2d04198c87cp@chr18:28621487..28621504, +
1.54e-15FFCP PHASE1:Hg19::chr4:174429652..174429665,+#_507adf603296166e65f946928bf11dfbp@chr4:174429652..174429665, +
1.54e-15FFCP PHASE2:Hg19::chr4:174429652..174429665,+#_507adf603296166e65f946928bf11dfbp@chr4:174429652..174429665, +
1.67e-15FFCP PHASE2:Hg19::chr2:95714054..95714058,+#_c14ccf98fb5ab0d9bc5ffa7be514a2cbp@chr2:95714054..95714058, +
1.67e-15FFCP PHASE1:Hg19::chr2:95714054..95714058,+#_c14ccf98fb5ab0d9bc5ffa7be514a2cbp@chr2:95714054..95714058, +
1.79e-15FFCP PHASE1:Hg19::chr4:174429255..174429289,+#_ce47688b0335142f2673d96ec0608b40p@chr4:174429255..174429289, +
1.79e-15FFCP PHASE2:Hg19::chr4:174429255..174429289,+#_ce47688b0335142f2673d96ec0608b40p@chr4:174429255..174429289, +
2.37e-15FFCP PHASE1:Hg19::chr1:154378546..154378548,+#_5a4709728609379057353e48f3d2fa12p@chr1:154378546..154378548, +
2.37e-15FFCP PHASE2:Hg19::chr1:154378546..154378548,+#_5a4709728609379057353e48f3d2fa12p@chr1:154378546..154378548, +
6.82e-15FFCP PHASE1:Hg19::chr3:124829277..124829294,-#_7e27eb1f50af80836e0f425a3584eaebp10@SLC12A8
6.82e-15FFCP PHASE2:Hg19::chr3:124829277..124829294,-#_7e27eb1f50af80836e0f425a3584eaebp10@SLC12A8
8.43e-15FFCP PHASE1:Hg19::chr3:154797300..154797313,+#_a33e6b0d59a3fd7de71a35c01a25aaf6p21@MME
8.43e-15FFCP PHASE2:Hg19::chr3:154797300..154797313,+#_a33e6b0d59a3fd7de71a35c01a25aaf6p21@MME
1.2e-14FFCP PHASE1:Hg19::chr19:633607..633619,-#_9afc8a60014db010b76c20a1f9f1e987p3@POLRMT
1.2e-14FFCP PHASE2:Hg19::chr19:633607..633619,-#_9afc8a60014db010b76c20a1f9f1e987p3@POLRMT
2.36e-14FFCP PHASE1:Hg19::chr2:198629457..198629461,+#_1a3fc0234f46ddd7dde882601e9c862cp@chr2:198629457..198629461, +
2.36e-14FFCP PHASE2:Hg19::chr2:198629457..198629461,+#_1a3fc0234f46ddd7dde882601e9c862cp@chr2:198629457..198629461, +
3.09e-14FFCP PHASE1:Hg19::chr11:113945540..113945542,-#_3f0e45529ef3d4f35fdf5566b404a545p@chr11:113945540..113945542, -
3.09e-14FFCP PHASE2:Hg19::chr11:113945540..113945542,-#_3f0e45529ef3d4f35fdf5566b404a545p@chr11:113945540..113945542, -
3.74e-14FFCP PHASE1:Hg19::chr12:26783639..26783652,-#_6dc34b1d82fba70603d0d62d19cdd548p9@ITPR2
3.74e-14FFCP PHASE2:Hg19::chr12:26783639..26783652,-#_6dc34b1d82fba70603d0d62d19cdd548p9@ITPR2
5.28e-14FFCP PHASE1:Hg19::chr12:54362447..54362462,-#_86f5ae84b62d76bb22085fa7c383d993p1@HOTAIR
5.28e-14FFCP PHASE2:Hg19::chr12:54362447..54362462,-#_86f5ae84b62d76bb22085fa7c383d993p1@HOTAIR
1.98e-13FFCP PHASE1:Hg19::chr15:66284416..66284418,-#_6fed2278bfa2b62bdc3d5e41a0f1da37p@chr15:66284416..66284418, -
1.98e-13FFCP PHASE2:Hg19::chr15:66284416..66284418,-#_6fed2278bfa2b62bdc3d5e41a0f1da37p@chr15:66284416..66284418, -
2.15e-13FFCP PHASE1:Hg19::chr3:154801537..154801556,+#_1d0b860a7c439df7435b0924f793d1b5p17@MME
2.15e-13FFCP PHASE2:Hg19::chr3:154801537..154801556,+#_1d0b860a7c439df7435b0924f793d1b5p17@MME
5.56e-13FFCP PHASE1:Hg19::chr12:26783618..26783634,-#_b8562bb9ae7086f0b2376d0d138aea68p8@ITPR2
5.56e-13FFCP PHASE2:Hg19::chr12:26783618..26783634,-#_b8562bb9ae7086f0b2376d0d138aea68p8@ITPR2
6.32e-13FFCP PHASE1:Hg19::chr17:59147214..59147221,+#_3ec798ec73614f23c1384c1640ee79a2p1@ENST00000437246
6.32e-13FFCP PHASE2:Hg19::chr17:59147214..59147221,+#_3ec798ec73614f23c1384c1640ee79a2p1@ENST00000437246
7.54e-13FFCP PHASE1:Hg19::chr3:154899644..154899672,+#_a3fd2d1705892904231d3f88a3409fc7p@chr3:154899644..154899672, +
7.54e-13FFCP PHASE2:Hg19::chr3:154899644..154899672,+#_a3fd2d1705892904231d3f88a3409fc7p@chr3:154899644..154899672, +
8.03e-13FFCP PHASE2:Hg19::chrX:138802915..138802934,-#_1597e8a5ca4f75f84fa9708c10d59f58p@chrX:138802915..138802934, -
8.03e-13FFCP PHASE1:Hg19::chrX:138802915..138802934,-#_1597e8a5ca4f75f84fa9708c10d59f58p@chrX:138802915..138802934, -
9.55e-13FFCP PHASE1:Hg19::chr12:54384370..54384382,+#_a43ea0beb6c442b71e4ceeb47db32efep5@HOXC6
9.55e-13FFCP PHASE2:Hg19::chr12:54384370..54384382,+#_a43ea0beb6c442b71e4ceeb47db32efep5@HOXC6
1.22e-12FFCP PHASE1:Hg19::chr3:113603761..113603770,+#_9d10562ecd00647ab40abb74d0b7b7b9p1@ENST00000478867
1.22e-12FFCP PHASE2:Hg19::chr3:113603761..113603770,+#_9d10562ecd00647ab40abb74d0b7b7b9p1@ENST00000478867
1.36e-12FFCP PHASE2:Hg19::chr12:54402694..54402705,+#_e92680032f4d1aa225290f9015a6154dp5@HOXC8
1.36e-12FFCP PHASE1:Hg19::chr12:54402694..54402705,+#_e92680032f4d1aa225290f9015a6154dp5@HOXC8
1.52e-12FFCP PHASE1:Hg19::chr11:9597049..9597068,+#_3471152fdcf656dd28a5cef291cd70cap13@WEE1
1.52e-12FFCP PHASE2:Hg19::chr11:9597049..9597068,+#_3471152fdcf656dd28a5cef291cd70cap13@WEE1
2.16e-12FFCP PHASE2:Hg19::chr7:23520253..23520276,+#_a8d5f0ac9fa3868b3acddb0c9007812fp1@ENST00000428259
2.16e-12FFCP PHASE1:Hg19::chr7:23520253..23520276,+#_a8d5f0ac9fa3868b3acddb0c9007812fp1@ENST00000428259
2.59e-12FFCP PHASE1:Hg19::chr12:54379066..54379073,+#_75b6a820c2a56089ca479e810e701663p11@HOXC10
2.59e-12FFCP PHASE2:Hg19::chr12:54379066..54379073,+#_75b6a820c2a56089ca479e810e701663p11@HOXC10
2.62e-12FFCP PHASE2:Hg19::chr2:91777916..91777918,+#_b1353b286c44c5e699b3b838c492c595p1@ENST00000443031
2.62e-12FFCP PHASE1:Hg19::chr2:91777916..91777918,+#_b1353b286c44c5e699b3b838c492c595p1@ENST00000443031
3.24e-12FFCP PHASE1:Hg19::chr8:98900237..98900248,+#_375f929e1b5fdb63abbb37f9115a1793p8@MATN2
3.24e-12FFCP PHASE2:Hg19::chr8:98900237..98900248,+#_375f929e1b5fdb63abbb37f9115a1793p8@MATN2
3.62e-12FFCP PHASE1:Hg19::chr12:54361138..54361164,-#_7d4009a86af60e79db2b98dbfec81d70p4@HOTAIR
3.62e-12FFCP PHASE2:Hg19::chr12:54361138..54361164,-#_7d4009a86af60e79db2b98dbfec81d70p4@HOTAIR
4.43e-12FFCP PHASE1:Hg19::chr13:75941109..75941132,-#_f462fe5bee45a7505f35d367f90a5a6ap@chr13:75941109..75941132, -
4.43e-12FFCP PHASE2:Hg19::chr13:75941109..75941132,-#_f462fe5bee45a7505f35d367f90a5a6ap@chr13:75941109..75941132, -
1.82e-11FFCP PHASE1:Hg19::chr15:67524744..67524745,+#_cc5265f92f3a632162d650639464566fp1@ENST00000497294
1.82e-11FFCP PHASE1:Hg19::chr8:68318708..68318725,+#_cc5265f92f3a632162d650639464566fp1@ENST00000483964
1.82e-11FFCP PHASE2:Hg19::chr15:67524744..67524745,+#_cc5265f92f3a632162d650639464566fp1@ENST00000497294
1.82e-11FFCP PHASE2:Hg19::chr8:68318708..68318725,+#_cc5265f92f3a632162d650639464566fp1@ENST00000483964
2.71e-11FFCP PHASE1:Hg19::chr16:476408..476412,+#_3b8b7a7d020da89df78168fd4c780105p1@AB383948
2.71e-11FFCP PHASE2:Hg19::chr16:476408..476412,+#_3b8b7a7d020da89df78168fd4c780105p1@AB383948

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0002588&oldid=3272195"