FFCP PHASE1:Hg19::chrX:106960285..106960299,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1831 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3051 | |||
|TSSclassifier=strong | |||
|UniProt=D6R9J1,Q99576 | |||
|association_with_transcript=0bp_to_ENST00000503515,NM_004089,uc004eng.2_5end | |||
|coexpression_cluster_id=C2446 | |||
|description=CAGE_peak_1_at_TSC22D3_5end | |||
|id=chrX:106960285..106960299,- | |||
|ontology_enrichment_celltype=CL:0000738!2.30e-22!140;CL:0002087!1.66e-18!119;CL:0002031!1.47e-17!124;CL:0002057!1.42e-14!42;CL:0000860!1.65e-13!45;CL:0000766!6.40e-13!76;CL:0000037!6.29e-11!172;CL:0000566!6.29e-11!172;CL:0000791!9.82e-11!18;CL:0000789!9.82e-11!18;CL:0002420!9.82e-11!18;CL:0002419!9.82e-11!18;CL:0000790!9.82e-11!18;CL:0000988!3.07e-10!182;CL:0000557!3.17e-10!71;CL:0002032!1.24e-09!165;CL:0000837!1.24e-09!165;CL:0000838!1.43e-09!52;CL:0002009!2.71e-09!65;CL:0000542!5.86e-09!53;CL:0000051!5.86e-09!53;CL:0002194!7.88e-09!63;CL:0000576!7.88e-09!63;CL:0000040!7.88e-09!63;CL:0000559!7.88e-09!63;CL:0000839!2.66e-08!70;CL:0000625!5.52e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000791;9.71e-11;18!CL:0000789;9.71e-11;18!CL:0002419;9.71e-11;18!CL:0000860;7.17e-10;33!CL:0002057;7.17e-10;33!CL:0000576;5.95e-09;48!CL:0002087;1.33e-07;104!CL:0000473;1.37e-07;39!CL:0000234;1.37e-07;39!CL:0000766;1.72e-07;69!CL:0000625;5.49e-07;11!CL:0000136;8.37e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,6.42e-23,136;CL:0002087,4.65e-19,115;CL:0002031,4.66e-18,120;CL:0000860,1.42e-14,42;CL:0002057,1.42e-14,42;CL:0000766,1.54e-13,72;CL:0000473,5.04e-13,48;CL:0000234,5.04e-13,48;CL:0000037,3.85e-11,168;CL:0000557,9.66e-11,67;CL:0000791,9.81e-11,18;CL:0000789,9.81e-11,18;CL:0002420,9.81e-11,18;CL:0002419,9.81e-11,18;CL:0000790,9.81e-11,18;CL:0000988,1.48e-10,177;CL:0002032,7.88e-10,161;CL:0000837,7.88e-10,161;CL:0002009,8.36e-10,61;CL:0000838,1.43e-09,52;CL:0002194,2.50e-09,59;CL:0000576,2.50e-09,59;CL:0000040,2.50e-09,59;CL:0000559,2.50e-09,59;CL:0000542,5.84e-09,53;CL:0000051,5.84e-09,53;CL:0000839,1.02e-08,66;CL:0000625,5.51e-07,11 | |||
|ontology_enrichment_development_v019=CL:0002057;8.73e-11;42!CL:0000790;9.71e-11;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.98e-22!115;UBERON:0002390!6.25e-15!102;UBERON:0003061!6.25e-15!102;UBERON:0002193!3.85e-13!112;UBERON:0002371!8.76e-10!80;UBERON:0002405!9.24e-09!115;UBERON:0001474!1.61e-08!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.58e-22,114;UBERON:0002390,1.87e-15,98;UBERON:0003061,1.87e-15,98;UBERON:0002193,1.49e-13,108;UBERON:0002371,3.23e-10,76;UBERON:0002405,4.95e-10,93;UBERON:0001474,7.30e-09,82;UBERON:0004765,9.75e-08,90 | |||
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| |||
|short_description=p1@TSC22D3 | |||
}} |
Revision as of 06:32, 23 January 2014
Short description: | p1@TSC22D3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TSC22D3_5end |
Coexpression cluster: | C2446_Mast_CD4_CD8_CD19_Natural_Neutrophils_Peripheral |
Association with transcript: | 0bp_to_ENST00000503515, NM_004089, uc004eng.2_5end |
EntrezGene: | TSC22D3 |
HGNC: | 3051 |
UniProt: | D6R9J1Q99576 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 6.42e-23 | 136 |
nongranular leukocyte | 4.65e-19 | 115 |
hematopoietic lineage restricted progenitor cell | 4.66e-18 | 120 |
classical monocyte | 1.42e-14 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.42e-14 | 42 |
myeloid leukocyte | 1.54e-13 | 72 |
defensive cell | 5.04e-13 | 48 |
phagocyte | 5.04e-13 | 48 |
hematopoietic stem cell | 3.85e-11 | 168 |
granulocyte monocyte progenitor cell | 9.66e-11 | 67 |
mature alpha-beta T cell | 9.81e-11 | 18 |
alpha-beta T cell | 9.81e-11 | 18 |
immature T cell | 9.81e-11 | 18 |
mature T cell | 9.81e-11 | 18 |
immature alpha-beta T cell | 9.81e-11 | 18 |
hematopoietic cell | 1.48e-10 | 177 |
hematopoietic oligopotent progenitor cell | 7.88e-10 | 161 |
hematopoietic multipotent progenitor cell | 7.88e-10 | 161 |
macrophage dendritic cell progenitor | 8.36e-10 | 61 |
lymphoid lineage restricted progenitor cell | 1.43e-09 | 52 |
monopoietic cell | 2.50e-09 | 59 |
monocyte | 2.50e-09 | 59 |
monoblast | 2.50e-09 | 59 |
promonocyte | 2.50e-09 | 59 |
lymphocyte | 5.84e-09 | 53 |
common lymphoid progenitor | 5.84e-09 | 53 |
myeloid lineage restricted progenitor cell | 1.02e-08 | 66 |
CD8-positive, alpha-beta T cell | 5.51e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
adult organism | 3.58e-22 | 114 |
hematopoietic system | 1.87e-15 | 98 |
blood island | 1.87e-15 | 98 |
hemolymphoid system | 1.49e-13 | 108 |
bone marrow | 3.23e-10 | 76 |
immune system | 4.95e-10 | 93 |
bone element | 7.30e-09 | 82 |
skeletal element | 9.75e-08 | 90 |