FFCP PHASE1:Hg19::chrX:70838380..70838395,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2833 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4540 | |||
|TSSclassifier=strong | |||
|UniProt=C9JB00,P49682 | |||
|association_with_transcript=-13bp_to_ENST00000373687,ENST00000373693,NM_001142797,NM_001504,uc004eaf.2,uc011mpx.1_5end | |||
|coexpression_cluster_id=C974 | |||
|description=CAGE_peak_2_at_CXCR3_5end | |||
|id=chrX:70838380..70838395,- | |||
|ontology_enrichment_celltype=CL:0000738!9.82e-50!140;CL:0000037!1.30e-49!172;CL:0000566!1.30e-49!172;CL:0000988!1.18e-47!182;CL:0002032!5.74e-44!165;CL:0000837!5.74e-44!165;CL:0002087!5.16e-43!119;CL:0002031!3.08e-37!124;CL:0000838!7.24e-31!52;CL:0000542!4.94e-30!53;CL:0000051!4.94e-30!53;CL:0000084!2.98e-27!25;CL:0000827!2.98e-27!25;CL:0000791!1.06e-22!18;CL:0000789!1.06e-22!18;CL:0002420!1.06e-22!18;CL:0002419!1.06e-22!18;CL:0000790!1.06e-22!18;CL:0000763!1.66e-16!112;CL:0000049!1.66e-16!112;CL:0000766!3.16e-14!76;CL:0000625!8.36e-14!11;CL:0002057!4.35e-13!42;CL:0002194!2.94e-12!63;CL:0000576!2.94e-12!63;CL:0000040!2.94e-12!63;CL:0000559!2.94e-12!63;CL:0000860!9.80e-12!45;CL:0002009!1.29e-11!65;CL:0000134!2.45e-11!358;CL:0000839!5.75e-11!70;CL:0000557!1.09e-10!71;CL:0002320!1.18e-10!365;CL:0000624!2.70e-09!6;CL:0000219!9.86e-09!390 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.75e-44;18!CL:0000789;1.75e-44;18!CL:0002419;1.75e-44;18!CL:0000084;8.08e-35;25!CL:0000625;2.50e-29;11!CL:0000624;4.47e-14;6!CL:0000542;2.44e-12;53!CL:0000784;1.58e-11;3!CL:0002087;4.94e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.80e-44,18;CL:0000789,1.80e-44,18;CL:0002420,1.80e-44,18;CL:0002419,1.80e-44,18;CL:0000790,1.80e-44,18;CL:0000084,6.55e-35,25;CL:0000827,6.55e-35,25;CL:0000625,2.17e-29,11;CL:0000838,6.33e-28,52;CL:0000542,2.78e-27,53;CL:0000051,2.78e-27,53;CL:0000738,1.31e-23,136;CL:0000037,1.73e-22,168;CL:0000988,7.61e-21,177;CL:0002087,8.04e-21,115;CL:0002032,2.81e-18,161;CL:0000837,2.81e-18,161;CL:0002031,8.51e-17,120;CL:0000624,5.58e-14,6;CL:0000784,1.33e-11,3;CL:0000893,1.15e-07,2;CL:0002489,1.15e-07,2;CL:0000809,1.15e-07,2;CL:0000808,1.15e-07,2;CL:0000894,1.15e-07,2;CL:0000806,1.15e-07,2;CL:0000807,1.15e-07,2;CL:0000805,1.15e-07,2;CL:0002425,1.15e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000790;1.75e-44;18!CL:0000051;2.44e-12;53!CL:0002425;1.23e-07;2 | |||
|ontology_enrichment_disease=DOID:2531!2.89e-08!51;DOID:0060083!2.89e-08!51;DOID:1240!2.14e-07!39 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.22e-21!102;UBERON:0003061!4.22e-21!102;UBERON:0002193!6.71e-20!112;UBERON:0000178!5.38e-13!15;UBERON:0000179!5.38e-13!15;UBERON:0000463!5.38e-13!15;UBERON:0002384!9.86e-10!375;UBERON:0001474!9.79e-09!86;UBERON:0002371!1.53e-08!80;UBERON:0004177!2.34e-08!7;UBERON:0002405!3.11e-08!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.69e-09;15!UBERON:0000179;2.69e-09;15!UBERON:0000463;2.69e-09;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.96e-09,15;UBERON:0000179,1.96e-09,15;UBERON:0000463,1.96e-09,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60468152070698,2.95562122019805,2.59745578335141,1.57345710739562,1.91914699048606,0.77408061658038,0,0,0,0,0,0,0.553995408531877,0.401088894940283,0,0.447830948479849,0.32389366601898,0,0.290796477559129,0.377875943688809,0,1.16214518452842,0,2.16794459626573,0.28769239232215,0.768482119587302,0.709446689665756,0.689491361473237,2.5819387343353,0,0.376484679085209,0.272906150057846,0,0.612167784741805,1.60464513538047,0.639337125799041,0,0,0.426224750532694,0.290209238628584,1.13477044938228,0.622822248995575,0.251248665256743,0,0.434377689410233,0.605399502633369,1.10483290796269,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0.800791974072025,0,0,0,0.569212969109448,2.34894875748376,0.764546456250458,0,1.68152568894461,0.263384084775077,1.180258620683,2.35806457649499,3.08402248499264,7.69057878797119,0.32592226663359,0,0,7.13026924065111,3.24066498222321,2.43687284041983,3.79125409271022,7.42929654408916,8.71397628651184,7.5641436117691,5.80335037350282,4.05724320029073,0.14828656316206,0,0,6.34532319106371,5.3650869104269,8.24705869158312,6.32549230048757,3.50421955756506,6.51083453856419,0,2.10805166708882,2.04778577847069,2.49861453104692,4.49876778883632,1.64225599384209,2.82249440514625,6.41856469880418,3.04131248153878,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0.132957960518865,10.2550968451297,8.57992366170192,2.60020250930695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176096868026452,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56919201590938,1.18218456121156,1.07813787429759,0.513372145118994,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44737618286021,0.215714200818617,1.921096040462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52234282769651,1.52927441428475,1.70894156152249,0.238231775457789,1.23408681925858,2.59389324477087,0.540031437238115,0.79312517629427,0,0,0,0,0,0.426851060090485,1.75368900001705,0.199579371432817,1.34053759092657,0,0.324621940274555,0,1.14117339516596,0,0,0.169291777801603,0.321176150207399,0,0,0,0.614481528616916,0.447352215784832,0.500547425135725,0.19538809540204,2.22724939116194,0,0,0.33307196799782,0,0,0,0,0.780103689942349,0,0,0,0,0,0,0,0.16480387422676,0,0,0.552567831062295,0,0,0.246169610922139,0,0,0,1.02314474045374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0.784901281975124,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0.296521128680622,0,0.104421949505455,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160317640503067,0,0,0,0,0,0,0,0,0,0,0.509991088181609,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0,0,0.592713324460491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0.496166021811951,0.197611631897944,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.132864840313363,0.163565394255844,0,0,0,0.79994958341972,0.853533837553127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,1.5913297769302,0.0752103283492573,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230467975111559,0,0,0,0,0,0,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308696632431779,0,0,0,0,0,0,0,0,0.0939839179798536,0.45120521581504,0.0999411559249289,0,0,0,0,0.458729283404541,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0.535928260312357,0,0,0.213233981900981,0.23806443146374,0.322944549180031,0.434523000071005,0,0,0.202117188958219,0,0,1.14498490124799,0.215166616178029,0,0,0,0,0,0,0.244482888365733,0,0,2.01273793591026,0.320568492303233 | |||
|short_description=p2@CXCR3 | |||
}} |
Revision as of 06:02, 23 January 2014
Short description: | p2@CXCR3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CXCR3_5end |
Coexpression cluster: | C974_Dendritic_CD8_CD4_Natural_NK_B_Basophils |
Association with transcript: | -13bp_to_ENST00000373687, ENST00000373693, NM_001142797, NM_001504, uc004eaf.2, uc011mpx.1_5end |
EntrezGene: | CXCR3 |
HGNC: | 4540 |
UniProt: | C9JB00P49682 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.80e-44 | 18 |
alpha-beta T cell | 1.80e-44 | 18 |
immature T cell | 1.80e-44 | 18 |
mature T cell | 1.80e-44 | 18 |
immature alpha-beta T cell | 1.80e-44 | 18 |
T cell | 6.55e-35 | 25 |
pro-T cell | 6.55e-35 | 25 |
CD8-positive, alpha-beta T cell | 2.17e-29 | 11 |
lymphoid lineage restricted progenitor cell | 6.33e-28 | 52 |
lymphocyte | 2.78e-27 | 53 |
common lymphoid progenitor | 2.78e-27 | 53 |
leukocyte | 1.31e-23 | 136 |
hematopoietic stem cell | 1.73e-22 | 168 |
hematopoietic cell | 7.61e-21 | 177 |
nongranular leukocyte | 8.04e-21 | 115 |
hematopoietic oligopotent progenitor cell | 2.81e-18 | 161 |
hematopoietic multipotent progenitor cell | 2.81e-18 | 161 |
hematopoietic lineage restricted progenitor cell | 8.51e-17 | 120 |
CD4-positive, alpha-beta T cell | 5.58e-14 | 6 |
plasmacytoid dendritic cell | 1.33e-11 | 3 |
thymocyte | 1.15e-07 | 2 |
double negative thymocyte | 1.15e-07 | 2 |
double-positive, alpha-beta thymocyte | 1.15e-07 | 2 |
DN4 thymocyte | 1.15e-07 | 2 |
DN1 thymic pro-T cell | 1.15e-07 | 2 |
DN2 thymocyte | 1.15e-07 | 2 |
DN3 thymocyte | 1.15e-07 | 2 |
immature single positive thymocyte | 1.15e-07 | 2 |
early T lineage precursor | 1.15e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 1.96e-09 | 15 |
haemolymphatic fluid | 1.96e-09 | 15 |
organism substance | 1.96e-09 | 15 |