FFCP PHASE1:Hg19::chr9:2015306..2015323,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6595 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11098 | |||
|TSSclassifier=strong | |||
|UniProt=P51531,Q56A76,Q8N9Q1 | |||
|association_with_transcript=-18bp_to_ENST00000349721,ENST00000357248,NM_003070,NM_139045,uc003zhc.2,uc003zhd.2,uc010mha.2_5end | |||
|description=CAGE_peak_3_at_SMARCA2_5end | |||
|id=chr9:2015306..2015323,+ | |||
|ontology_enrichment_celltype=CL:0000037!9.28e-13!172;CL:0000566!9.28e-13!172;CL:0000988!1.47e-12!182;CL:0002032!4.97e-12!165;CL:0000837!4.97e-12!165;CL:0000838!4.45e-10!52;CL:0000542!9.77e-10!53;CL:0000051!9.77e-10!53;CL:0000738!7.26e-09!140;CL:0000945!4.09e-08!24;CL:0000826!4.09e-08!24;CL:0002031!3.27e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000945;2.65e-08;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,2.44e-13,168;CL:0000988,3.36e-13,177;CL:0002032,1.02e-12,161;CL:0000837,1.02e-12,161;CL:0000838,1.42e-10,52;CL:0000542,5.53e-10,53;CL:0000051,5.53e-10,53;CL:0000738,1.98e-09,136;CL:0000945,1.82e-08,24;CL:0000826,1.82e-08,24;CL:0002031,6.24e-08,120;CL:0002087,2.89e-07,115 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.57e-33!115;UBERON:0001049!7.92e-26!57;UBERON:0005068!7.92e-26!57;UBERON:0006241!7.92e-26!57;UBERON:0007135!7.92e-26!57;UBERON:0002616!1.62e-22!59;UBERON:0000955!3.24e-21!69;UBERON:0006238!3.24e-21!69;UBERON:0003080!1.25e-20!42;UBERON:0002780!2.46e-20!41;UBERON:0001890!2.46e-20!41;UBERON:0006240!2.46e-20!41;UBERON:0001017!8.42e-20!82;UBERON:0005743!1.30e-19!86;UBERON:0001893!4.49e-17!34;UBERON:0002020!6.24e-17!34;UBERON:0003528!6.24e-17!34;UBERON:0000073!1.42e-16!94;UBERON:0001016!1.42e-16!94;UBERON:0002791!1.79e-16!33;UBERON:0001869!2.35e-16!32;UBERON:0002619!1.53e-13!22;UBERON:0000956!2.20e-13!25;UBERON:0000203!2.20e-13!25;UBERON:0001950!1.12e-12!20;UBERON:0003075!1.39e-12!86;UBERON:0007284!1.39e-12!86;UBERON:0002346!3.31e-11!90;UBERON:0003056!2.01e-10!61;UBERON:0000153!1.26e-08!129;UBERON:0007811!1.26e-08!129;UBERON:0000033!1.52e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.87e-15;32!UBERON:0001893;2.12e-15;34!UBERON:0002780;2.20e-15;41!UBERON:0001890;2.20e-15;41!UBERON:0002791;3.55e-15;32!UBERON:0003528;3.91e-15;34!UBERON:0002020;3.91e-15;34!UBERON:0000073;5.62e-15;53!UBERON:0002616;5.62e-15;53!UBERON:0002619;2.52e-14;22!UBERON:0000956;5.86e-14;25!UBERON:0000203;5.86e-14;25!UBERON:0001950;2.15e-13;20!UBERON:0001017;1.46e-10;75!UBERON:0000955;3.43e-10;68!UBERON:0007023;2.94e-09;114!UBERON:0001016;1.89e-08;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.25e-34,114;UBERON:0001049,8.42e-27,56;UBERON:0005068,8.42e-27,56;UBERON:0006241,8.42e-27,56;UBERON:0007135,8.42e-27,56;UBERON:0000073,2.91e-25,53;UBERON:0002616,2.91e-25,53;UBERON:0000955,1.38e-21,68;UBERON:0006238,1.38e-21,68;UBERON:0002780,2.44e-21,41;UBERON:0001890,2.44e-21,41;UBERON:0003080,2.44e-21,41;UBERON:0006240,2.44e-21,41;UBERON:0001017,6.86e-20,81;UBERON:0001893,6.68e-18,34;UBERON:0003528,9.43e-18,34;UBERON:0002020,9.43e-18,34;UBERON:0001869,3.82e-17,32;UBERON:0002791,7.11e-17,32;UBERON:0001016,2.14e-16,89;UBERON:0003075,1.24e-14,82;UBERON:0007284,1.24e-14,82;UBERON:0002619,3.52e-14,22;UBERON:0000956,5.15e-14,25;UBERON:0000203,5.15e-14,25;UBERON:0001950,2.86e-13,20;UBERON:0002346,8.58e-13,86;UBERON:0003056,7.87e-11,61;UBERON:0010371,1.05e-10,104;UBERON:0003076,9.79e-07,15;UBERON:0003057,9.79e-07,15 | |||
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| |||
|short_description=p3@SMARCA2 | |||
}} |
Revision as of 00:35, 23 January 2014
Short description: | p3@SMARCA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SMARCA2_5end |
Coexpression cluster: | NA |
Association with transcript: | -18bp_to_ENST00000349721, ENST00000357248, NM_003070, NM_139045, uc003zhc.2, uc003zhd.2, uc010mha.2_5end |
EntrezGene: | SMARCA2 |
HGNC: | 11098 |
UniProt: | P51531Q56A76Q8N9Q1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 2.44e-13 | 168 |
hematopoietic cell | 3.36e-13 | 177 |
hematopoietic oligopotent progenitor cell | 1.02e-12 | 161 |
hematopoietic multipotent progenitor cell | 1.02e-12 | 161 |
lymphoid lineage restricted progenitor cell | 1.42e-10 | 52 |
lymphocyte | 5.53e-10 | 53 |
common lymphoid progenitor | 5.53e-10 | 53 |
leukocyte | 1.98e-09 | 136 |
lymphocyte of B lineage | 1.82e-08 | 24 |
pro-B cell | 1.82e-08 | 24 |
hematopoietic lineage restricted progenitor cell | 6.24e-08 | 120 |
nongranular leukocyte | 2.89e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.25e-34 | 114 |
neural tube | 8.42e-27 | 56 |
neural rod | 8.42e-27 | 56 |
future spinal cord | 8.42e-27 | 56 |
neural keel | 8.42e-27 | 56 |
regional part of nervous system | 2.91e-25 | 53 |
regional part of brain | 2.91e-25 | 53 |
brain | 1.38e-21 | 68 |
future brain | 1.38e-21 | 68 |
regional part of forebrain | 2.44e-21 | 41 |
forebrain | 2.44e-21 | 41 |
anterior neural tube | 2.44e-21 | 41 |
future forebrain | 2.44e-21 | 41 |
central nervous system | 6.86e-20 | 81 |
telencephalon | 6.68e-18 | 34 |
brain grey matter | 9.43e-18 | 34 |
gray matter | 9.43e-18 | 34 |
cerebral hemisphere | 3.82e-17 | 32 |
regional part of telencephalon | 7.11e-17 | 32 |
nervous system | 2.14e-16 | 89 |
neural plate | 1.24e-14 | 82 |
presumptive neural plate | 1.24e-14 | 82 |
regional part of cerebral cortex | 3.52e-14 | 22 |
cerebral cortex | 5.15e-14 | 25 |
pallium | 5.15e-14 | 25 |
neocortex | 2.86e-13 | 20 |
neurectoderm | 8.58e-13 | 86 |
pre-chordal neural plate | 7.87e-11 | 61 |
ecto-epithelium | 1.05e-10 | 104 |
posterior neural tube | 9.79e-07 | 15 |
chordal neural plate | 9.79e-07 | 15 |