FFCP PHASE1:Hg19::chr8:144911181..144911218,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=22827 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17042 | |||
|TSSclassifier=strong | |||
|UniProt=Q9UHX1,E9PN18 | |||
|association_with_transcript=0bp_to_ENST00000313352,ENST00000453551,ENST00000529999,ENST00000531951,NM_001136033,uc003yzq.2,uc003yzr.2_5end | |||
|description=CAGE_peak_3_at_PUF60_5end | |||
|id=chr8:144911181..144911218,- | |||
|ontology_enrichment_celltype=CL:0000055!6.67e-25!180;CL:0002321!4.15e-22!248;CL:0000220!1.04e-21!246;CL:0000183!1.24e-13!59;CL:0000680!1.90e-13!57;CL:0000056!1.90e-13!57;CL:0000355!1.90e-13!57;CL:0000187!8.66e-13!54;CL:0000393!2.47e-12!60;CL:0000211!2.47e-12!60;CL:0000192!2.18e-11!42;CL:0000514!2.18e-11!42;CL:0000222!2.02e-10!119;CL:0000359!9.00e-10!32;CL:0000057!5.10e-09!75;CL:0000221!8.40e-08!71;CL:0000066!6.87e-07!254 | |||
|ontology_enrichment_celltype_v019=CL:0000359;4.35e-09;32!CL:0000192;8.85e-08;43!CL:0000187;7.44e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,3.80e-18,250;CL:0000680,3.66e-14,58;CL:0000056,3.66e-14,58;CL:0000355,3.66e-14,58;CL:0000187,2.24e-13,55;CL:0000393,1.37e-12,61;CL:0000211,1.37e-12,61;CL:0000192,2.83e-11,43;CL:0000514,2.83e-11,43;CL:0000359,2.94e-10,32;CL:0000222,5.38e-09,121;CL:0000057,7.95e-08,76;CL:0000221,2.05e-07,72 | |||
|ontology_enrichment_development_v019=CL:0000514;8.85e-08;43!CL:0000355;5.81e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!2.06e-19!365;UBERON:0000119!5.57e-17!312;UBERON:0000483!1.41e-16!309;UBERON:0000914!2.56e-15!83;UBERON:0002329!2.56e-15!83;UBERON:0003077!2.56e-15!83;UBERON:0003059!2.56e-15!83;UBERON:0007282!2.56e-15!83;UBERON:0009618!2.56e-15!83;UBERON:0007285!2.56e-15!83;UBERON:0000481!2.96e-15!347;UBERON:0000486!3.27e-14!82;UBERON:0004290!1.33e-13!70;UBERON:0005256!5.58e-12!143;UBERON:0001134!1.12e-10!61;UBERON:0002036!1.12e-10!61;UBERON:0003082!1.12e-10!61;UBERON:0000477!1.20e-10!286;UBERON:0004111!5.31e-10!241;UBERON:0002100!7.09e-10!216;UBERON:0002385!1.05e-09!63;UBERON:0001015!1.05e-09!63;UBERON:0000383!1.05e-09!63;UBERON:0000025!2.31e-09!194;UBERON:0003104!3.23e-09!238;UBERON:0009142!3.23e-09!238;UBERON:0004121!1.08e-07!169;UBERON:0000490!1.10e-07!138;UBERON:0000033!2.15e-07!123;UBERON:0000924!3.47e-07!173;UBERON:0006601!3.47e-07!173;UBERON:0002049!3.65e-07!79;UBERON:0007798!3.65e-07!79;UBERON:0001637!4.62e-07!42;UBERON:0003509!4.62e-07!42;UBERON:0004572!4.62e-07!42;UBERON:0003102!8.48e-07!95 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003077,2.07e-15,72;UBERON:0007285,2.07e-15,72;UBERON:0007524,2.27e-15,73;UBERON:0000119,2.66e-15,309;UBERON:0002329,4.44e-15,71;UBERON:0003059,4.44e-15,71;UBERON:0007282,4.44e-15,71;UBERON:0004290,4.44e-15,71;UBERON:0009618,4.44e-15,71;UBERON:0000483,5.70e-15,306;UBERON:0007503,8.03e-15,78;UBERON:0000486,2.72e-14,83;UBERON:0001134,4.72e-12,62;UBERON:0002036,4.72e-12,62;UBERON:0003082,4.72e-12,62;UBERON:0002385,4.04e-11,64;UBERON:0001015,4.04e-11,64;UBERON:0000383,4.04e-11,64;UBERON:0000490,3.72e-10,148;UBERON:0005256,1.47e-09,122;UBERON:0003104,2.56e-09,160;UBERON:0009142,2.56e-09,160;UBERON:0000025,1.00e-08,192;UBERON:0004111,2.45e-08,240;UBERON:0010314,2.78e-08,132;UBERON:0001637,4.99e-08,42;UBERON:0003509,4.99e-08,42;UBERON:0004572,4.99e-08,42;UBERON:0004872,3.09e-07,83;UBERON:0004121,8.73e-07,171;UBERON:0000924,8.73e-07,171;UBERON:0006601,8.73e-07,171 | |||
|phase1_expression=0.908391896352783,1.07050261945492,0.845726424575827,2.00146596706261,2.68176656656373,0.872338524100369,0,1.26343974685366,3.65659879479774,2.7030733015166,5.58240934377942,0.655324116390517,0.527533956456907,1.60896258848061,2.98257638155124,0.672325146451775,1.20538905604795,0,0.975865597581014,1.84681587115182,4.08001382488506,2.19418305034661,3.72106783270374,2.6006140763848,2.51085279189606,0,0.164201178899891,0.157421562627358,0,0,0.154816123316076,4.59710612239464,5.12050061923025,3.32778609150109,0.232401601740905,0.853015394924529,0,0,0.601633342410425,0.217010870715852,0,0.32389366601898,0.515151135268373,0.145398238779565,0,0,0,0,0.309706370895104,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0.212604299965044,0.209658645508376,0.336985893439485,0,0,0.285012743741249,0,0,0,0,0.889509253863555,0,0,0,0.661044872784862,0,0,0,0,0,0.560508562981536,0.263384084775077,0,0,0.616804496998528,0,0,0,0,0.222820913770347,0.294605907474837,0.443067789167242,0,0,0.130059347559878,0,0.276350017785848,0.289803085735052,0.14828656316206,0,0,0,0,0,0,0.318565414324097,0,0,0.150575119077773,0.127986611154418,0,0.236777252044017,0,0.201606743224732,0.267440195783507,0.289648807765598,0,2.01210257911091,1.15076305659177,1.0843174571537,2.50668955317945,1.30361867064741,0.795285947051099,1.45990461090791,0.661743720148475,1.55210578223795,1.22968699970376,1.57174890597255,1.45718115317017,1.11235332835329,0.324547393654683,0.348259474598534,0,0,0,0,0.198762407366705,0,0.694281003215189,1.13061588384802,1.67799774483962,1.6507082516404,1.04497483268405,0.775250277507987,0,0,0.805658634218294,2.28081631715554,2.4406205754817,0.367663080345869,0,0,0.44905874525234,0.450445921933289,4.5994991239765,0.949265659568129,1.64881569537367,0,0,1.3082821564276,1.49091585508596,1.51956613997496,1.58891016975863,0.573673241497627,1.06400514659507,3.36406560085384,2.1349799145941,3.45334567784024,0.311211035399766,1.48181739276657,1.47115712802113,2.27036141467397,2.30470369792,1.64025002283658,4.37024107562449,3.4228309292667,4.03511437489863,1.64408298101271,1.78060238804945,0.98315564691574,1.22492502752936,1.59684612505298,1.65321249881225,2.37600571456411,2.47266929278557,2.73048408581408,3.59309070908119,1.0100166837244,1.50142223846357,1.10825646193673,1.31693286264251,1.22595118319608,2.25357088359895,2.38207584636044,0.717558542755448,1.2813443329114,0.423863802319124,1.80054657650641,0.721367704669072,1.54584324027377,1.67505170698431,1.18143432568886,1.65642908774038,0.757301322732344,1.01254888506529,0.80823028409406,0.355009592516614,1.30977727695932,1.69560592310488,0.966304265816484,1.09098448236334,1.43402297694502,1.34171076742555,1.72288698817931,1.16193942869518,0.932949495138334,2.01856680700503,0.72995471815166,1.56449532329816,2.57296375277154,5.52539685409922,0.928735856063958,2.16563844500876,0.946454400318751,1.01150814046861,0.241011029883482,0.441175890929576,0.435758888184812,0.71181185733329,1.07865046528132,1.17732879075208,1.15424147083917,0,2.80483547606892,1.6462960453256,4.41026134156626,2.53510069643662,0,0.590789906681404,0.441463099414651,1.59884970106048,1.71567810298526,2.41450627898976,3.37205259772859,1.50793458617446,2.03694579348765,0.325808305310325,3.11980435583874,0,1.39116485970092,1.05667824812239,0.577465791044295,0.925971025153221,0.570762456703795,0,0.858486162094873,0,0.234004265139238,0.297262324577456,3.74935335947108,0.671928512795438,1.13420077793909,1.88072897675981,1.45316969256981,2.68367875415648,0,0.176096868026452,0,0,0.37872730027914,2.22242630022592,3.05590740446622,2.34434894420094,6.84289784090821,2.05654985406647,1.20137223137567,2.5724378936752,1.45770409648969,3.05172048183296,0.51336800074665,1.03417372606222,7.15312891703765,1.690605505112,0.797814349754612,0,2.31486636835928,1.41849132023278,2.93064396917709,1.14382394926518,1.08524321078289,1.64648067356154,2.60588947434988,1.06617584622764,1.58390374586686,2.1100756394171,1.74306691720059,0.699810938274399,0,0,0,1.4377491329495,1.14861935834114,2.85273810081437,1.44781306667579,1.64381058040307,2.14873155887875,1.12085143993527,0.197030760201927,0.431255149719035,0.256686072559497,1.01637849688985,2.60279707715243,0.773288812777695,1.34013012267479,0,0,0,0,0.981531933753119,2.00068208423871,1.89885516589815,0.831883446123229,0.535286966391485,0.630809660135739,1.52283839490527,3.00946099727719,0,0,1.99267679560631,3.87175253937577,0.955719759148911,1.37060810223918,2.40200396667599,0.206768026122887,0.215714200818617,0.320182673410333,0.606255142892519,3.32870879020994,2.41912234663744,0.248107807818777,0.767309866440312,1.12264037773229,0.640695746278505,1.53512174720011,0.965123526861645,5.93672265779964,1.85051632563187,3.37367278094941,1.88892458831761,0,3.83494248917865,0.846016147141356,2.40607764363942,0.828728900423067,1.26295892981067,2.36718518408732,1.83574180943194,1.35359883872224,0.847168708148562,0.784349769176855,0,1.26661954671451,1.1373338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| |||
|short_description=p3@PUF60 | |||
}} |
Revision as of 00:21, 23 January 2014
Short description: | p3@PUF60 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PUF60_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000313352, ENST00000453551, ENST00000529999, ENST00000531951, NM_001136033, uc003yzq.2, uc003yzr.2_5end |
EntrezGene: | PUF60 |
HGNC: | 17042 |
UniProt: | Q9UHX1E9PN18 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 3.80e-18 | 250 |
muscle precursor cell | 3.66e-14 | 58 |
myoblast | 3.66e-14 | 58 |
multi-potent skeletal muscle stem cell | 3.66e-14 | 58 |
muscle cell | 2.24e-13 | 55 |
electrically responsive cell | 1.37e-12 | 61 |
electrically active cell | 1.37e-12 | 61 |
smooth muscle cell | 2.83e-11 | 43 |
smooth muscle myoblast | 2.83e-11 | 43 |
vascular associated smooth muscle cell | 2.94e-10 | 32 |
mesodermal cell | 5.38e-09 | 121 |
fibroblast | 7.95e-08 | 76 |
ectodermal cell | 2.05e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
paraxial mesoderm | 2.07e-15 | 72 |
presumptive paraxial mesoderm | 2.07e-15 | 72 |
dense mesenchyme tissue | 2.27e-15 | 73 |
cell layer | 2.66e-15 | 309 |
somite | 4.44e-15 | 71 |
presomitic mesoderm | 4.44e-15 | 71 |
presumptive segmental plate | 4.44e-15 | 71 |
dermomyotome | 4.44e-15 | 71 |
trunk paraxial mesoderm | 4.44e-15 | 71 |
epithelium | 5.70e-15 | 306 |
epithelial vesicle | 8.03e-15 | 78 |
multilaminar epithelium | 2.72e-14 | 83 |
skeletal muscle tissue | 4.72e-12 | 62 |
striated muscle tissue | 4.72e-12 | 62 |
myotome | 4.72e-12 | 62 |
muscle tissue | 4.04e-11 | 64 |
musculature | 4.04e-11 | 64 |
musculature of body | 4.04e-11 | 64 |
unilaminar epithelium | 3.72e-10 | 148 |
trunk mesenchyme | 1.47e-09 | 122 |
mesenchyme | 2.56e-09 | 160 |
entire embryonic mesenchyme | 2.56e-09 | 160 |
tube | 1.00e-08 | 192 |
anatomical conduit | 2.45e-08 | 240 |
structure with developmental contribution from neural crest | 2.78e-08 | 132 |
artery | 4.99e-08 | 42 |
arterial blood vessel | 4.99e-08 | 42 |
arterial system | 4.99e-08 | 42 |
splanchnic layer of lateral plate mesoderm | 3.09e-07 | 83 |
ectoderm-derived structure | 8.73e-07 | 171 |
ectoderm | 8.73e-07 | 171 |
presumptive ectoderm | 8.73e-07 | 171 |