FFCP PHASE1:Hg19::chr7:156685844..156685884,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=64327 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13243 | |||
|TSSclassifier=strong | |||
|UniProt=F8WCL1,F2Z2Z3,F8WEK4,F8WEN8,F8WDW0,B7Z633 | |||
|association_with_transcript=0bp_to_ENST00000414218,ENST00000430278,ENST00000433968,ENST00000434278,ENST00000444719,ENST00000454132,ENST00000485985,ENST00000540390_5end | |||
|description=CAGE_peak_1_at_LMBR1_5end | |||
|id=chr7:156685844..156685884,- | |||
|ontology_enrichment_celltype=CL:0000791!1.99e-07!18;CL:0000789!1.99e-07!18;CL:0002420!1.99e-07!18;CL:0002419!1.99e-07!18;CL:0000790!1.99e-07!18;CL:0000542!3.32e-07!53;CL:0000051!3.32e-07!53;CL:0000838!8.19e-07!52 | |||
|ontology_enrichment_celltype_v019=CL:0000791;2.07e-07;18!CL:0000789;2.07e-07;18!CL:0002419;2.07e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.99e-07,18;CL:0000789,1.99e-07,18;CL:0002420,1.99e-07,18;CL:0002419,1.99e-07,18;CL:0000790,1.99e-07,18;CL:0000037,2.63e-07,168;CL:0000542,3.32e-07,53;CL:0000051,3.32e-07,53;CL:0000838,8.19e-07,52 | |||
|ontology_enrichment_development_v019=CL:0000790;2.07e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.89e-17!115;UBERON:0001049!2.20e-14!57;UBERON:0005068!2.20e-14!57;UBERON:0006241!2.20e-14!57;UBERON:0007135!2.20e-14!57;UBERON:0002780!4.90e-13!41;UBERON:0001890!4.90e-13!41;UBERON:0006240!4.90e-13!41;UBERON:0003080!8.15e-13!42;UBERON:0001017!1.87e-12!82;UBERON:0002616!4.55e-12!59;UBERON:0000955!4.75e-12!69;UBERON:0006238!4.75e-12!69;UBERON:0005743!1.29e-11!86;UBERON:0000073!5.09e-11!94;UBERON:0001016!5.09e-11!94;UBERON:0002020!1.05e-10!34;UBERON:0003528!1.05e-10!34;UBERON:0001893!1.13e-10!34;UBERON:0001869!2.19e-10!32;UBERON:0002791!3.82e-10!33;UBERON:0002619!3.20e-09!22;UBERON:0001950!1.51e-08!20;UBERON:0003075!1.84e-08!86;UBERON:0007284!1.84e-08!86;UBERON:0002346!6.34e-08!90;UBERON:0000956!8.74e-08!25;UBERON:0000203!8.74e-08!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.08e-09;41!UBERON:0001890;1.08e-09;41!UBERON:0001869;2.09e-09;32!UBERON:0003528;2.79e-09;34!UBERON:0002020;2.79e-09;34!UBERON:0001893;2.85e-09;34!UBERON:0002619;3.29e-09;22!UBERON:0002791;3.99e-09;32!UBERON:0001950;1.52e-08;20!UBERON:0000073;1.83e-08;53!UBERON:0002616;1.83e-08;53!UBERON:0000956;9.34e-08;25!UBERON:0000203;9.34e-08;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.90e-16,114;UBERON:0001049,1.46e-14,56;UBERON:0005068,1.46e-14,56;UBERON:0006241,1.46e-14,56;UBERON:0007135,1.46e-14,56;UBERON:0000073,4.54e-14,53;UBERON:0002616,4.54e-14,53;UBERON:0002780,4.90e-13,41;UBERON:0001890,4.90e-13,41;UBERON:0003080,4.90e-13,41;UBERON:0006240,4.90e-13,41;UBERON:0001017,1.50e-12,81;UBERON:0000955,3.67e-12,68;UBERON:0006238,3.67e-12,68;UBERON:0001016,7.74e-12,89;UBERON:0003528,1.05e-10,34;UBERON:0002020,1.05e-10,34;UBERON:0001893,1.13e-10,34;UBERON:0001869,2.19e-10,32;UBERON:0002791,5.78e-10,32;UBERON:0002619,3.20e-09,22;UBERON:0001950,1.51e-08,20;UBERON:0003075,3.21e-08,82;UBERON:0007284,3.21e-08,82;UBERON:0000956,8.74e-08,25;UBERON:0000203,8.74e-08,25;UBERON:0002346,1.12e-07,86;UBERON:0003056,7.93e-07,61 | |||
|phase1_expression=28.1601487869363,16.4857403396057,23.6803398881232,13.009528785907,16.5375604938096,34.0212024399144,15.1979926900986,18.3198763293781,20.1112933713876,30.4710081261871,22.3296373751177,24.028550934319,14.2434168243365,34.6545788288131,34.4653270757032,16.8081286612944,24.7104756489831,21.1789926212338,28.3001023298494,29.0565697061219,22.0320746543793,15.9861907953825,31.7721945715473,29.9754990909616,28.3726365484254,30.4125354876846,28.6531057180311,26.997797990592,47.9904417755663,67.9378034632066,27.7120860735776,16.5495820406207,25.301297177373,27.7315507625091,81.1856262081561,71.2267854761982,50.4992755655937,85.869288322441,81.6215901203477,81.5960873891603,33.3634056617487,54.4141358911886,35.0302771982494,25.5900900252034,24.9398122834614,27.4119989142232,28.5887715393992,32.0710952657024,34.0677007984614,22.7276989934499,26.8968741855556,34.762887793622,30.3376199048224,37.4381116478619,33.8566216485854,25.9774428568794,35.2048933574621,29.8882234311963,26.9353825286394,56.4835087653925,35.8028790447463,21.4403345121365,27.3265210941636,30.2619572878213,29.311133101487,44.2560475259089,44.8432019276814,31.4060831570929,42.2401163920363,41.7002581833824,36.9293696606355,52.6637019462217,48.7352076658962,31.2657823741674,37.6309610938127,24.3204028789716,54.9287006306361,56.9170423869309,46.7711457288503,37.9066949175861,43.1649189522026,29.5915929098707,38.719173781491,50.2447522361161,53.3705552318133,57.181849823912,38.8384107424932,44.2559378764952,36.3574680031674,49.6107952358389,79.6898156753228,64.0088536414323,88.3051156969279,87.2330768621571,76.2291645654889,37.663924122836,136.123160918772,105.719895179525,93.3430805457772,55.6731029650958,91.9100791906725,81.9064703921089,52.6032166701361,48.5749592019357,63.34027010709,52.2819991217346,55.5147920718282,33.8161084075782,33.5553116704486,31.9009534931132,24.5951515829405,47.8175091462837,72.2155562599234,93.6392898313996,52.2677619024884,52.0089882981829,65.1474839123266,69.4127439874912,52.6280959400566,52.8818587778001,44.2736748622365,36.1171776890382,51.3461156055205,43.2594745701934,69.9612068693137,49.9600001812876,45.9831678275786,122.173686394188,109.383040075455,114.84575227906,41.4471672733735,25.4866326687382,30.6870148424473,34.6981586289184,34.5923158338764,26.9414525267132,37.3784395114017,18.4921250715002,28.1713755148922,23.7250455284943,27.4922879219485,71.9730019859931,29.8722136399885,24.1009887809879,30.8320023971949,36.7413745701454,23.9324328933957,64.869449811053,48.0475725055307,79.4919052845269,38.1623822144074,39.5707913748817,40.6154386880885,57.661410076249,28.5259616622736,39.6169980393697,40.9630134412149,132.567797453866,124.162425677662,185.435219471627,106.749769033924,66.1436731975106,68.8255002285838,65.0763652212188,51.0389427165509,41.435073923813,44.6813451526078,45.1572036738122,49.0613239890826,49.3618142975427,45.6172342386714,185.810388584849,201.645737357129,38.8123706406856,25.3455695364612,28.4918651245304,21.8475148341811,37.001924076597,16.6694139633228,26.3518472066884,25.6197589751292,18.2533985828698,43.5695449559673,31.522297264307,22.0673569203169,49.6452362675375,33.9943795443199,20.3859645695403,20.2904049939708,24.5302883264113,19.4283284717341,21.7253822490965,29.1371299862637,28.5115137605564,42.055759278508,23.4613546065477,34.9241140374087,26.1360628602052,26.210294503527,30.0353249439549,12.9351265526923,34.1722311326754,26.9004817724723,33.247693858102,16.6811495934718,22.3736090933284,28.8457073100666,30.0595285374056,20.0916391971525,34.5962969886079,27.3392152495835,25.5077431671742,29.576075891432,22.6723675240154,31.8259824327019,25.3164498361899,27.0874874348132,18.6800992940645,34.42666209222,40.0882220910653,29.8208057713956,21.2586927260321,27.2992553619885,29.5689105339844,34.9115034356268,36.9977928051815,30.6154002385284,32.8673825437283,27.8865462886844,24.0493647635659,23.9704808331847,49.271943475237,21.9029345261742,16.0810234548221,15.1948413487729,14.8597736970233,13.7157101517221,20.7036900069727,19.3872393589817,23.8600919584647,20.9558548191549,18.5197527478545,23.2525206728875,23.3258163117084,20.2108109079106,19.2373578473195,59.7905918245965,40.6701144029993,32.5143468951806,17.641045366265,67.1801684555704,51.1070152672366,64.9868897349544,36.641437251416,58.9114620621514,22.8185187697039,45.1073673029451,35.9685610424383,31.9682132268986,33.7947824828633,15.9646069602059,36.3977174847852,24.5363281442965,27.3595755741181,21.6031997393912,50.9613560596591,36.1128699809756,42.8071842527846,45.0416506836787,36.0564188079846,29.2998237244003,29.2505331424047,20.808362720422,21.5587818169587,33.9323898961696,36.7197501857781,44.4210272606128,48.2452337933177,19.1691339582606,67.0022003538483,30.376709734563,35.6604358730128,32.2828695653994,35.0953964925336,28.8280440086447,25.9752129379629,31.6487107467127,15.3965201420435,19.9485335844448,22.2253862804499,36.0141305114529,41.6006322921288,34.4408454378291,31.4621246171876,33.869189528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| |||
|short_description=p1@LMBR1 | |||
}} |
Revision as of 20:20, 22 January 2014
Short description: | p1@LMBR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LMBR1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000414218, ENST00000430278, ENST00000433968, ENST00000434278, ENST00000444719, ENST00000454132, ENST00000485985, ENST00000540390_5end |
EntrezGene: | LMBR1 |
HGNC: | 13243 |
UniProt: | F8WCL1F2Z2Z3F8WEK4F8WEN8F8WDW0B7Z633 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.99e-07 | 18 |
alpha-beta T cell | 1.99e-07 | 18 |
immature T cell | 1.99e-07 | 18 |
mature T cell | 1.99e-07 | 18 |
immature alpha-beta T cell | 1.99e-07 | 18 |
hematopoietic stem cell | 2.63e-07 | 168 |
lymphocyte | 3.32e-07 | 53 |
common lymphoid progenitor | 3.32e-07 | 53 |
lymphoid lineage restricted progenitor cell | 8.19e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.90e-16 | 114 |
neural tube | 1.46e-14 | 56 |
neural rod | 1.46e-14 | 56 |
future spinal cord | 1.46e-14 | 56 |
neural keel | 1.46e-14 | 56 |
regional part of nervous system | 4.54e-14 | 53 |
regional part of brain | 4.54e-14 | 53 |
regional part of forebrain | 4.90e-13 | 41 |
forebrain | 4.90e-13 | 41 |
anterior neural tube | 4.90e-13 | 41 |
future forebrain | 4.90e-13 | 41 |
central nervous system | 1.50e-12 | 81 |
brain | 3.67e-12 | 68 |
future brain | 3.67e-12 | 68 |
nervous system | 7.74e-12 | 89 |
brain grey matter | 1.05e-10 | 34 |
gray matter | 1.05e-10 | 34 |
telencephalon | 1.13e-10 | 34 |
cerebral hemisphere | 2.19e-10 | 32 |
regional part of telencephalon | 5.78e-10 | 32 |
regional part of cerebral cortex | 3.20e-09 | 22 |
neocortex | 1.51e-08 | 20 |
neural plate | 3.21e-08 | 82 |
presumptive neural plate | 3.21e-08 | 82 |
cerebral cortex | 8.74e-08 | 25 |
pallium | 8.74e-08 | 25 |
neurectoderm | 1.12e-07 | 86 |
pre-chordal neural plate | 7.93e-07 | 61 |