FFCP PHASE1:Hg19::chr7:107643674..107643685,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3912 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6486 | |||
|TSSclassifier=strong | |||
|UniProt=P07942 | |||
|association_with_transcript=14bp_to_ENST00000222399_5end | |||
|description=CAGE_peak_3_at_LAMB1_5end | |||
|id=chr7:107643674..107643685,- | |||
|ontology_enrichment_celltype=CL:0000055!1.21e-20!180;CL:0000222!1.86e-17!119;CL:0000220!5.03e-17!246;CL:0002321!9.49e-17!248;CL:0000057!6.51e-12!75;CL:0000183!8.55e-12!59;CL:0000680!1.23e-11!57;CL:0000056!1.23e-11!57;CL:0000355!1.23e-11!57;CL:0000187!2.00e-11!54;CL:0000393!1.84e-09!60;CL:0000211!1.84e-09!60;CL:0000066!1.50e-08!254;CL:0000548!3.21e-08!679;CL:0000004!3.21e-08!679;CL:0000255!3.21e-08!679;CL:0000192!1.11e-07!42;CL:0000514!1.11e-07!42;CL:0000012!1.40e-07!682 | |||
|ontology_enrichment_celltype_v019=CL:0000187;1.69e-07;55!CL:0002494;3.21e-07;16!CL:0002620;6.18e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.10e-18,121;CL:0002321,2.22e-14,250;CL:0000680,6.27e-13,58;CL:0000056,6.27e-13,58;CL:0000355,6.27e-13,58;CL:0000187,1.06e-12,55;CL:0000057,5.99e-11,76;CL:0000393,1.54e-09,61;CL:0000211,1.54e-09,61;CL:0000192,1.80e-08,43;CL:0000514,1.80e-08,43;CL:0002620,3.88e-07,23;CL:0002494,5.38e-07,16 | |||
|ontology_enrichment_development_v019=CL:0000355;7.70e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:193;7.04e-07;29!DOID:120;7.77e-07;27 | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!3.86e-17!143;UBERON:0002100!1.03e-16!216;UBERON:0003104!1.52e-16!238;UBERON:0009142!1.52e-16!238;UBERON:0003914!2.32e-16!118;UBERON:0000481!1.55e-15!347;UBERON:0000475!1.83e-14!365;UBERON:0000468!3.60e-14!659;UBERON:0000119!4.52e-14!312;UBERON:0000490!9.32e-14!138;UBERON:0000914!2.26e-13!83;UBERON:0002329!2.26e-13!83;UBERON:0003077!2.26e-13!83;UBERON:0003059!2.26e-13!83;UBERON:0007282!2.26e-13!83;UBERON:0009618!2.26e-13!83;UBERON:0007285!2.26e-13!83;UBERON:0000483!3.86e-13!309;UBERON:0004290!4.25e-13!70;UBERON:0004872!6.25e-13!84;UBERON:0002049!1.06e-12!79;UBERON:0007798!1.06e-12!79;UBERON:0001134!9.07e-12!61;UBERON:0002036!9.07e-12!61;UBERON:0003082!9.07e-12!61;UBERON:0000486!1.19e-11!82;UBERON:0002385!1.62e-11!63;UBERON:0001015!1.62e-11!63;UBERON:0000383!1.62e-11!63;UBERON:0000467!4.72e-11!625;UBERON:0001009!7.13e-11!113;UBERON:0000480!8.23e-11!626;UBERON:0004535!2.18e-10!110;UBERON:0000055!5.08e-10!69;UBERON:0003103!5.40e-09!69;UBERON:0000477!7.34e-09!286;UBERON:0000926!9.27e-09!448;UBERON:0004120!9.27e-09!448;UBERON:0006603!9.27e-09!448;UBERON:0001981!1.82e-08!60;UBERON:0007500!1.82e-08!60;UBERON:0004537!1.82e-08!60;UBERON:0006965!1.82e-08!60;UBERON:0002050!3.26e-08!605;UBERON:0005423!3.26e-08!605;UBERON:0000923!4.85e-08!604;UBERON:0005291!4.85e-08!604;UBERON:0006598!4.85e-08!604;UBERON:0002532!4.85e-08!604;UBERON:0000922!4.95e-08!612;UBERON:0007100!8.36e-08!27;UBERON:0004111!8.44e-08!241;UBERON:0003102!8.62e-08!95;UBERON:0000948!2.35e-07!24;UBERON:0005498!2.35e-07!24;UBERON:0004140!2.35e-07!24;UBERON:0009881!2.35e-07!24;UBERON:0004141!2.35e-07!24;UBERON:0003084!2.35e-07!24;UBERON:0007005!2.35e-07!24;UBERON:0004139!2.35e-07!24;UBERON:0004291!2.35e-07!24;UBERON:0000466!2.93e-07!126;UBERON:0001637!3.28e-07!42;UBERON:0003509!3.28e-07!42;UBERON:0004572!3.28e-07!42;UBERON:0002199!6.32e-07!45;UBERON:0002416!6.32e-07!45;UBERON:0001048!8.82e-07!168 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;9.24e-08;25!UBERON:0000948;3.68e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,1.89e-19,160;UBERON:0009142,1.89e-19,160;UBERON:0002100,5.23e-16,199;UBERON:0003914,1.05e-15,117;UBERON:0000490,2.14e-15,148;UBERON:0007503,2.47e-15,78;UBERON:0005256,1.60e-14,122;UBERON:0002329,2.83e-14,71;UBERON:0003059,2.83e-14,71;UBERON:0007282,2.83e-14,71;UBERON:0004290,2.83e-14,71;UBERON:0009618,2.83e-14,71;UBERON:0007524,3.58e-14,73;UBERON:0003077,9.95e-14,72;UBERON:0007285,9.95e-14,72;UBERON:0001134,7.97e-13,62;UBERON:0002036,7.97e-13,62;UBERON:0003082,7.97e-13,62;UBERON:0002385,1.50e-12,64;UBERON:0001015,1.50e-12,64;UBERON:0000383,1.50e-12,64;UBERON:0004872,1.94e-12,83;UBERON:0000486,5.59e-12,83;UBERON:0002049,6.13e-12,78;UBERON:0007798,6.13e-12,78;UBERON:0001009,2.14e-11,112;UBERON:0000119,4.11e-11,309;UBERON:0004535,7.15e-11,109;UBERON:0000483,2.96e-10,306;UBERON:0000055,1.74e-09,68;UBERON:0003103,3.69e-09,68;UBERON:0007100,3.25e-08,27;UBERON:0007500,6.06e-08,59;UBERON:0001981,6.06e-08,59;UBERON:0004537,6.06e-08,59;UBERON:0006965,6.06e-08,59;UBERON:0000948,1.01e-07,24;UBERON:0005498,1.01e-07,24;UBERON:0004140,1.01e-07,24;UBERON:0009881,1.01e-07,24;UBERON:0004141,1.01e-07,24;UBERON:0003084,1.01e-07,24;UBERON:0007005,1.01e-07,24;UBERON:0004139,1.01e-07,24;UBERON:0004291,1.01e-07,24;UBERON:0001637,2.10e-07,42;UBERON:0003509,2.10e-07,42;UBERON:0004572,2.10e-07,42;UBERON:0000926,8.20e-07,315;UBERON:0004120,8.20e-07,315;UBERON:0006603,8.20e-07,315;UBERON:0002199,9.43e-07,46;UBERON:0002416,9.43e-07,46 | |||
|phase1_expression=3.99692434395225,2.5692062866918,4.22863212287913,2.00146596706261,4.02264984984559,0.872338524100369,7.59899634504932,5.05375898741465,6.52964070499596,1.47440361900905,0,4.58726881473362,3.4289707169699,4.33182235360163,2.98257638155124,2.01697543935533,1.20538905604795,1.46062018077475,2.43966399395253,1.47745269692145,2.24400760368678,1.25381888591235,0.286235987131057,1.64249310087461,1.25542639594803,0,0,0,0,0,0,0,0.6024118375565,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.75227465255847,4.69490601792545,3.96373941714944,0.722878304769133,2.50668955317945,0.724232594804119,0.795285947051099,1.94653948121054,1.51255707462509,1.99556457716308,3.24988707064566,0.982343066232845,0.364295288292542,0.741568885568859,0.324547393654683,0,0,0,0,0,2.98143611050058,3.4409383804245,2.08284300964557,2.26123176769604,1.25849830862972,1.92582629358047,2.29894463190492,8.52775305258785,6.75955899104749,13.0541038978221,2.81980521976403,0.760272105718513,0.976248230192678,2.57364156242108,3.24056779152704,4.64358587077215,2.46982309888787,2.59006405111641,1.53316637465883,4.74632829784064,2.01521918323448,0,0,1.74437620857014,1.98788780678127,3.67228483827281,6.88527740228738,30.4046817993743,4.965357350777,2.24271040056923,5.33744978648525,3.20667812942308,12.1372303805909,4.31074150623002,4.41347138406339,8.62737337576109,9.21881479167998,2.57753575017176,3.74592092196385,1.71141546463335,2.69007624993242,4.57994544710683,1.94247533241758,1.40450806702248,3.47062091133319,0.982674538494144,4.02970546585485,3.56400857184616,0.741800787835671,4.55080680969013,0.718618141816238,1.34668891163253,1.37630371859161,3.3247693858102,0.877955241761676,1.5324389789951,0.901428353439581,3.17610112848059,7.71375433462106,1.92201649936711,4.23863802319124,11.1033705551229,2.67936576019941,5.92573242104947,3.16398655763703,6.75105328965065,1.85130309806277,6.31084435610286,3.86609574297657,2.58633690910099,12.7803453305981,1.0075209822764,2.03472710772585,3.47869535693934,1.90922284413584,0.860413786167011,0.243947412259191,0.927708378250397,0.69716365721711,0.621966330092223,0.756962552626885,1.09493207722749,3.12899064659632,1.92972281457866,2.76269842704961,1.85747171212792,2.88751792667834,1.41968160047813,1.01150814046861,0.964044119533928,0.772057809126758,2.39667388501647,0.949082476444386,0.539325232640658,0.98110732562673,0.38474715694639,1.4763109092493,2.80483547606892,3.7041661019826,1.47008711385542,0,0,0,0,2.09080345523293,2.57351715447788,1.42675371031213,1.1240175325762,0.603173834469785,2.4998880192803,0.651616610620649,0,5.77325368101093,2.08674728955138,4.93116515790451,3.17606185074362,4.1668696131895,1.52203321787679,0,0,0,0,0,1.87467667973554,2.51973192298289,1.84307626415102,3.22410681730254,5.52204483176528,0.383382679165211,0,0,0,0,0,0.698476837213859,1.14596527667483,0,1.71072446022705,0.411309970813294,1.20137223137567,0.285826432630578,5.83081638595876,4.3596006883328,4.47363543507795,1.80980402060889,17.8828222925941,1.690605505112,2.92531928243358,5.2003718455683,1.02882949704857,2.83698264046557,2.1313774321288,9.86548156241218,13.5655401347861,4.11620168390384,1.95441710576241,9.24019066730619,3.95975936466715,2.41151501647669,1.74306691720059,3.39908170018994,0,0,0,3.11512312139057,2.29723871668228,0,2.02693829334611,1.84928690295345,2.68591444859843,0,0,0,0,0,0,0.773288812777695,0.670065061337395,0,0,0,0,5.03035116048474,3.00102312635806,1.89885516589815,0.623912584592421,0.178428988797162,0.788512075169673,1.28855556491985,2.10662269809403,2.27407504055985,2.0694614258501,4.64957918974806,2.21243002250044,3.90976265106373,3.32861967686659,1.02943027143257,0,0,0,0.303127571446259,1.66435439510497,3.32629322662648,2.23297027036899,2.60885354589706,2.52594084989766,2.81906128362542,3.58195074346692,1.44768529029247,1.48418066444991,3.23840356985577,3.72879623157567,4.5169935807595,5.71179872101983,2.32420756919918,2.1754700926492,3.40860999515584,0.184161977871793,3.3296189967736,1.27463817604702,2.36023946926963,3.60959690325929,3.92778219232515,3.92174884588428,2.92278449306521,6.01644284689391,5.68666920354483,3.2317804002538,6.0456456508599,3.08454505380579,1.62567862526312,2.00675909541941,4.84264918785573,1.66215201785745,2.91037181138832,0,0,0.769350375349168,1.31205858279882,1.95227036798582,1.75169719801128,0.27470839445503,0.660075999364704,0.574265537996172,2.60024098414608,1.6068392984416,4.64019447802185,5.85384745035649,7.52168006158035,2.34322173223702,11.2791257111687,8.41096824702525,3.23861184181183,3.73934549716297,2.47927373041467,2.49847087574638,3.95599408733211,1.31505115112215,0,11.333244485903,2.7881490806424,4.31247012246524,3.19383618190213,0.869932992075073,2.59453906745488,1.5743737541619,1.48863347743867,4.11293252134344,5.3376454298671,2.303080121802,9.84259672478017,4.45484547096312,2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| |||
|short_description=p3@LAMB1 | |||
}} |
Revision as of 18:46, 22 January 2014
Short description: | p3@LAMB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LAMB1_5end |
Coexpression cluster: | NA |
Association with transcript: | 14bp_to_ENST00000222399_5end |
EntrezGene: | LAMB1 |
HGNC: | 6486 |
UniProt: | P07942 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.10e-18 | 121 |
embryonic cell | 2.22e-14 | 250 |
muscle precursor cell | 6.27e-13 | 58 |
myoblast | 6.27e-13 | 58 |
multi-potent skeletal muscle stem cell | 6.27e-13 | 58 |
muscle cell | 1.06e-12 | 55 |
fibroblast | 5.99e-11 | 76 |
electrically responsive cell | 1.54e-09 | 61 |
electrically active cell | 1.54e-09 | 61 |
smooth muscle cell | 1.80e-08 | 43 |
smooth muscle myoblast | 1.80e-08 | 43 |
skin fibroblast | 3.88e-07 | 23 |
cardiocyte | 5.38e-07 | 16 |